Wall clock time and date at job start Tue Mar 31 2020 08:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48504 * 109.47099 * 239.99628 * 3 2 1 5 5 H 1.48495 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47253 * 119.99865 * 3 2 1 7 7 C 1.37883 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 179.09338 * 7 2 1 9 9 C 1.50694 * 120.00284 * 358.82564 * 7 2 1 10 10 H 1.08998 * 109.47478 * 176.32487 * 9 7 2 11 11 C 1.50696 * 109.47241 * 56.32247 * 9 7 2 12 12 O 1.21287 * 120.00174 * 251.07289 * 11 9 7 13 13 N 1.34781 * 120.00187 * 71.07484 * 11 9 7 14 14 C 1.44577 * 118.64420 * 184.22163 * 13 11 9 15 15 C 1.54864 * 109.59852 * 270.70117 * 14 13 11 16 16 C 1.47090 * 110.32607 * 288.73357 * 15 14 13 17 17 C 1.52572 * 114.32219 * 62.80277 * 16 15 14 18 18 H 1.08992 * 109.49254 * 34.95268 * 17 16 15 19 19 O 1.42898 * 109.48917 * 155.00506 * 17 16 15 20 20 C 1.50884 * 109.35805 * 274.98467 * 17 16 15 21 21 C 1.47604 * 118.64175 * 3.95254 * 13 11 9 22 22 C 1.50702 * 109.46905 * 296.32476 * 9 7 2 23 23 C 1.38231 * 119.99832 * 341.44331 * 22 9 7 24 24 C 1.38237 * 119.99854 * 179.79047 * 23 22 9 25 25 C 1.38236 * 119.99932 * 0.44330 * 24 23 22 26 26 C 1.38237 * 119.99952 * 359.80892 * 25 24 23 27 27 C 1.38231 * 119.99953 * 359.97438 * 26 25 24 28 28 H 0.96992 * 119.99942 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.45078 * 30.74157 * 14 13 11 30 30 H 1.08998 * 109.44817 * 150.66295 * 14 13 11 31 31 H 1.08999 * 109.32926 * 49.00053 * 15 14 13 32 32 H 1.09002 * 109.32737 * 168.47113 * 15 14 13 33 33 H 1.09000 * 108.51261 * 184.05424 * 16 15 14 34 34 H 1.09001 * 108.51598 * 301.70856 * 16 15 14 35 35 H 0.96704 * 114.00096 * 179.97438 * 19 17 16 36 36 H 1.09000 * 109.36966 * 212.07683 * 20 17 16 37 37 H 1.09001 * 109.36700 * 331.70172 * 20 17 16 38 38 H 1.09002 * 108.94605 * 258.57797 * 21 13 11 39 39 H 1.09005 * 108.94709 * 17.20151 * 21 13 11 40 40 H 1.07997 * 120.00408 * 0.02562 * 23 22 9 41 41 H 1.07998 * 120.00147 * 180.27900 * 24 23 22 42 42 H 1.08001 * 120.00366 * 179.83376 * 25 24 23 43 43 H 1.08004 * 120.00036 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99912 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 -0.0143 9 6 1.2513 -2.4990 0.0279 10 1 1.9565 -3.3272 -0.0417 11 6 0.2970 -2.5527 -1.1372 12 8 -0.8976 -2.4636 -0.9473 13 7 0.7709 -2.6998 -2.3903 14 6 -0.1621 -2.6549 -3.4939 15 6 -0.6972 -4.0797 -3.7800 16 6 0.3569 -4.9099 -4.3827 17 6 1.5697 -5.1353 -3.4848 18 1 1.2454 -5.2064 -2.4467 19 8 2.2249 -6.3473 -3.8639 20 6 2.5255 -3.9775 -3.6355 21 6 2.2218 -2.8940 -2.5798 22 6 0.4772 -2.6053 1.3165 23 6 0.8165 -1.8089 2.3942 24 6 0.1037 -1.9033 3.5749 25 6 -0.9426 -2.8005 3.6808 26 6 -1.2785 -3.6006 2.6047 27 6 -0.5686 -3.5031 1.4226 28 1 -0.4850 0.8400 -0.0004 29 1 -0.9944 -1.9990 -3.2390 30 1 0.3429 -2.2720 -4.3807 31 1 -1.0260 -4.5359 -2.8462 32 1 -1.5427 -4.0167 -4.4650 33 1 -0.0699 -5.8799 -4.6377 34 1 0.6936 -4.4289 -5.3011 35 1 3.0070 -6.5539 -3.3341 36 1 3.5475 -4.3332 -3.5047 37 1 2.4188 -3.5480 -4.6316 38 1 2.6666 -1.9510 -2.8974 39 1 2.6662 -3.1907 -1.6297 40 1 1.6360 -1.1103 2.3126 41 1 0.3659 -1.2779 4.4154 42 1 -1.4978 -2.8762 4.6040 43 1 -2.0957 -4.3020 2.6875 44 1 -0.8308 -4.1285 0.5821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413028962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:46 Heat of formation + Delta-G solvation = -57.510942 kcal Electronic energy + Delta-G solvation = -26445.362935 eV Core-core repulsion = 22941.486972 eV Total energy + Delta-G solvation = -3503.875963 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.74279 -38.33626 -37.19417 -35.18570 -33.74987 -32.79638 -31.26293 -30.75809 -29.71004 -27.64768 -25.95815 -24.57004 -23.73524 -21.64366 -21.26831 -20.37784 -20.09307 -18.11788 -17.18490 -16.71540 -16.01552 -15.60493 -15.30197 -15.10085 -14.62069 -14.16278 -14.02866 -13.64309 -13.53724 -13.20660 -13.03577 -12.77554 -12.58328 -12.30543 -12.08928 -11.92241 -11.62297 -11.44043 -11.20552 -10.96067 -10.91845 -10.73218 -10.70931 -10.50606 -10.39884 -10.19514 -10.05496 -9.81412 -9.65217 -9.38693 -8.70759 -8.21881 -7.71919 -7.62273 -7.40339 -6.09192 -4.26819 2.53410 2.58458 3.20719 3.28245 3.29490 3.98275 4.16321 4.26061 4.34299 4.87297 4.96427 5.05172 5.16872 5.31174 5.39976 5.43981 5.63924 5.69675 5.84193 5.89539 5.95668 5.96703 6.04731 6.12974 6.15325 6.23319 6.27878 6.37517 6.42704 6.43902 6.59269 6.63645 6.66679 6.78200 6.84427 7.13226 7.18282 7.52723 7.60082 7.65504 7.69595 7.73398 7.78535 8.13848 8.25104 8.46336 8.76405 9.38955 9.70000 10.89760 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.006415 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.630442 B = 4363.542160 C = 5479.855956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.075 3.925 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.060 3.940 10 H 0.052 0.948 11 C 0.542 3.458 12 O -0.528 6.528 13 N -0.617 5.617 14 C 0.124 3.876 15 C -0.132 4.132 16 C -0.105 4.105 17 C 0.110 3.890 18 H 0.060 0.940 19 O -0.575 6.575 20 C -0.165 4.165 21 C 0.125 3.875 22 C -0.011 4.011 23 C -0.073 4.073 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.102 4.102 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.375 0.625 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -7.361 -4.164 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.134 4.134 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.039 3.961 10 H 0.070 0.930 11 C 0.332 3.668 12 O -0.402 6.402 13 N -0.353 5.353 14 C 0.000 4.000 15 C -0.171 4.171 16 C -0.143 4.143 17 C 0.052 3.948 18 H 0.077 0.923 19 O -0.381 6.381 20 C -0.204 4.204 21 C 0.001 3.999 22 C -0.012 4.012 23 C -0.091 4.091 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.159 4.159 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.222 0.778 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.496 -7.176 -4.507 8.834 hybrid contribution 0.788 1.342 0.234 1.573 sum 3.284 -5.834 -4.274 7.943 Atomic orbital electron populations 1.70110 1.05271 1.26875 1.44345 1.25059 0.94832 0.99080 0.94407 0.86771 0.79736 0.83537 0.78770 1.20204 1.21326 1.19968 1.20552 0.92591 0.88576 1.55922 0.91671 1.17923 0.92573 0.97920 0.87727 0.93036 1.21154 0.89470 0.72660 0.83496 1.90551 1.17198 1.48124 1.84321 1.47545 1.06263 1.75046 1.06398 1.21144 0.93787 0.95501 0.89565 1.21155 0.97379 0.97157 1.01453 1.20328 0.95032 1.00405 0.98517 1.21230 0.92253 0.82906 0.98406 0.92250 1.86474 1.46091 1.42541 1.63032 1.22651 0.99663 0.97250 1.00799 1.21772 0.81797 0.97146 0.99144 1.19876 0.94110 0.92192 0.95042 1.21092 0.99351 0.97174 0.91481 1.20981 0.97629 0.99621 0.98057 1.20766 0.98934 0.98694 0.98029 1.20825 1.00242 1.00680 0.94183 1.20948 0.95920 0.99198 0.95934 0.92561 0.90353 0.92307 0.91455 0.91255 0.91948 0.92226 0.77795 0.90678 0.91513 0.92105 0.89367 0.85628 0.88020 0.88192 0.88112 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.76 10.67 55.43 0.59 -22.17 16 2 C 0.07 1.88 4.22 -17.82 -0.08 1.81 16 3 Si 0.88 19.80 29.54 -169.99 -5.02 14.78 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -12.81 6.25 -34.44 -0.22 -13.03 16 8 H 0.07 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.35 1.96 -94.08 -0.18 1.17 16 10 H 0.05 1.07 6.60 -51.93 -0.34 0.72 16 11 C 0.54 12.34 5.23 -10.99 -0.06 12.29 16 12 O -0.53 -13.73 12.92 5.55 0.07 -13.66 16 13 N -0.62 -11.71 2.23 -172.32 -0.38 -12.10 16 14 C 0.12 2.14 5.35 -4.09 -0.02 2.12 16 15 C -0.13 -1.97 5.74 -28.58 -0.16 -2.14 16 16 C -0.11 -1.43 4.86 -29.79 -0.14 -1.57 16 17 C 0.11 1.49 3.08 -28.01 -0.09 1.41 16 18 H 0.06 0.91 7.49 -51.93 -0.39 0.52 16 19 O -0.58 -7.26 13.22 -35.23 -0.47 -7.73 16 20 C -0.16 -2.08 5.42 -27.11 -0.15 -2.23 16 21 C 0.12 1.99 5.39 -2.76 -0.01 1.97 16 22 C -0.01 -0.26 4.44 -104.62 -0.46 -0.73 16 23 C -0.07 -1.67 8.45 -39.58 -0.33 -2.00 16 24 C -0.14 -2.98 10.05 -39.58 -0.40 -3.37 16 25 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 26 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 27 C -0.10 -2.28 8.23 -39.58 -0.33 -2.61 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.08 1.56 7.37 -51.93 -0.38 1.18 16 30 H 0.06 0.89 8.06 -51.93 -0.42 0.48 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 35 H 0.38 3.19 8.95 45.56 0.41 3.60 16 36 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 37 H 0.07 0.83 7.31 -51.93 -0.38 0.45 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.43 5.37 -51.93 -0.28 1.15 16 40 H 0.13 2.94 6.37 -52.49 -0.33 2.61 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.11 2.35 6.88 -52.49 -0.36 1.99 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -29.91 341.08 -9.27 -39.18 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.77 Total: 10.00 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.43 Total: -13.44 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.21 Total: -34.27 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.39 Total: -21.38 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.91 -9.27 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413028962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.336 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds