Wall clock time and date at job start Tue Mar 31 2020 08:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99530 * 2 1 4 4 H 1.48499 * 109.47157 * 273.80394 * 3 2 1 5 5 H 1.48504 * 109.47036 * 33.80217 * 3 2 1 6 6 H 1.48503 * 109.47214 * 153.80116 * 3 2 1 7 7 C 1.37871 * 120.00486 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00349 * 356.19794 * 7 2 1 9 9 C 1.50705 * 120.00078 * 176.19574 * 7 2 1 10 10 H 1.08999 * 109.47036 * 333.54017 * 9 7 2 11 11 C 1.50699 * 109.47298 * 213.53365 * 9 7 2 12 12 O 1.21278 * 120.00002 * 264.05775 * 11 9 7 13 13 N 1.34773 * 119.99612 * 84.05593 * 11 9 7 14 14 C 1.47602 * 118.64702 * 4.32032 * 13 11 9 15 15 C 1.53606 * 112.33914 * 222.04118 * 14 13 11 16 16 C 1.50877 * 109.95389 * 40.82816 * 15 14 13 17 17 C 1.52563 * 109.36085 * 268.02423 * 16 15 14 18 18 H 1.09004 * 108.51515 * 323.76040 * 17 16 15 19 19 O 1.42900 * 108.51352 * 206.26711 * 17 16 15 20 20 C 1.47096 * 114.32659 * 85.01362 * 17 16 15 21 21 C 1.44580 * 118.64264 * 184.58539 * 13 11 9 22 22 C 1.50704 * 109.46758 * 93.53488 * 9 7 2 23 23 C 1.38236 * 119.99974 * 230.96952 * 22 9 7 24 24 C 1.38233 * 119.99667 * 179.97438 * 23 22 9 25 25 C 1.38227 * 120.00463 * 0.06935 * 24 23 22 26 26 C 1.38239 * 120.00003 * 359.89124 * 25 24 23 27 27 C 1.38232 * 120.00093 * 50.95171 * 22 9 7 28 28 H 0.96996 * 120.00557 * 359.97438 * 1 2 3 29 29 H 1.09000 * 108.94435 * 342.83434 * 14 13 11 30 30 H 1.08997 * 108.94990 * 101.46541 * 14 13 11 31 31 H 1.09002 * 109.50251 * 280.63595 * 15 14 13 32 32 H 1.09000 * 109.26170 * 160.87450 * 15 14 13 33 33 H 1.09004 * 109.48593 * 148.06099 * 16 15 14 34 34 H 1.08996 * 109.49404 * 27.99634 * 16 15 14 35 35 H 0.96709 * 113.99972 * 175.23124 * 19 17 16 36 36 H 1.08995 * 109.32974 * 176.93836 * 20 17 16 37 37 H 1.09000 * 109.18698 * 57.36911 * 20 17 16 38 38 H 1.08992 * 109.45238 * 209.29098 * 21 13 11 39 39 H 1.09000 * 109.45229 * 329.21632 * 21 13 11 40 40 H 1.07994 * 119.99656 * 359.70566 * 23 22 9 41 41 H 1.08006 * 119.99716 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00064 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.99942 * 180.10960 * 26 25 24 44 44 H 1.08008 * 119.99974 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4160 2.0930 -1.3970 5 1 1.4889 2.6282 0.7789 6 1 3.5845 1.4185 0.6181 7 6 2.0046 -1.1939 -0.0005 8 1 1.4665 -2.1283 0.0611 9 6 3.5092 -1.1952 -0.0871 10 1 3.8446 -0.2910 -0.5950 11 6 3.9668 -2.4050 -0.8604 12 8 4.3051 -3.4094 -0.2707 13 7 4.0002 -2.3708 -2.2073 14 6 3.6751 -1.1039 -2.8912 15 6 2.7859 -1.3181 -4.1253 16 6 1.7321 -2.3557 -3.8269 17 6 2.2487 -3.7326 -4.2330 18 1 2.8481 -3.6246 -5.1370 19 8 1.1283 -4.5670 -4.5340 20 6 3.0658 -4.3998 -3.2078 21 6 4.3473 -3.5782 -2.9228 22 6 4.0922 -1.2368 1.3020 23 6 5.0571 -0.3196 1.6743 24 6 5.5914 -0.3575 2.9486 25 6 5.1620 -1.3133 3.8501 26 6 4.1964 -2.2300 3.4781 27 6 3.6618 -2.1918 2.2039 28 1 -0.4851 0.8400 0.0004 29 1 3.1575 -0.4470 -2.1921 30 1 4.6016 -0.6236 -3.2058 31 1 3.3988 -1.6553 -4.9613 32 1 2.3026 -0.3771 -4.3880 33 1 0.8267 -2.1267 -4.3890 34 1 1.5090 -2.3511 -2.7600 35 1 1.3681 -5.4407 -4.8720 36 1 3.3447 -5.3932 -3.5590 37 1 2.4846 -4.4915 -2.2903 38 1 4.8275 -3.3162 -3.8655 39 1 5.0331 -4.1732 -2.3196 40 1 5.3965 0.4237 0.9682 41 1 6.3456 0.3589 3.2394 42 1 5.5792 -1.3425 4.8458 43 1 3.8596 -2.9756 4.1830 44 1 2.9073 -2.9080 1.9132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413028965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:50 Heat of formation + Delta-G solvation = -61.587848 kcal Electronic energy + Delta-G solvation = -26286.747873 eV Core-core repulsion = 22782.695123 eV Total energy + Delta-G solvation = -3504.052751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06262 -38.56767 -37.54298 -35.53519 -33.78567 -32.45615 -31.88360 -31.27246 -30.11112 -27.92435 -26.26328 -24.86033 -23.42378 -21.94892 -21.75801 -20.42593 -20.19640 -18.27009 -17.29448 -17.12149 -16.41996 -15.96760 -15.61530 -15.02507 -14.61880 -14.47786 -14.36994 -13.97389 -13.86203 -13.20233 -13.09917 -12.83696 -12.70712 -12.60269 -12.18826 -12.03752 -11.86218 -11.71601 -11.30025 -11.16864 -11.06598 -10.97507 -10.93218 -10.54090 -10.47834 -10.27196 -10.13043 -9.92609 -9.70292 -9.52263 -8.88706 -8.71442 -8.09471 -8.07092 -7.79339 -6.28428 -4.31769 2.16104 2.23685 3.10379 3.25232 3.29054 3.48659 3.68874 4.22477 4.37937 4.62689 4.89272 5.04419 5.05491 5.22267 5.32495 5.39592 5.54104 5.56997 5.59458 5.64332 5.71569 5.79978 5.83417 5.89801 5.97965 6.07721 6.20196 6.22930 6.23709 6.34509 6.39734 6.42105 6.45268 6.55574 6.75708 6.84782 6.88497 7.18082 7.21698 7.29063 7.31081 7.63418 7.81370 7.81701 7.97609 8.27280 8.73553 9.03826 9.28305 10.82389 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.006328 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.797752 B = 4423.966813 C = 5352.537968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.087 3.913 3 Si 0.849 3.151 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.032 3.968 10 H 0.059 0.941 11 C 0.535 3.465 12 O -0.553 6.553 13 N -0.609 5.609 14 C 0.103 3.897 15 C -0.122 4.122 16 C -0.115 4.115 17 C 0.116 3.884 18 H 0.038 0.962 19 O -0.572 6.572 20 C -0.169 4.169 21 C 0.124 3.876 22 C -0.038 4.038 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.065 4.065 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.369 0.631 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.558 -2.281 -6.640 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.118 4.118 3 Si 0.675 3.325 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.541 4.541 8 H 0.099 0.901 9 C 0.010 3.990 10 H 0.076 0.924 11 C 0.326 3.674 12 O -0.431 6.431 13 N -0.342 5.342 14 C -0.019 4.019 15 C -0.160 4.160 16 C -0.152 4.152 17 C 0.058 3.942 18 H 0.056 0.944 19 O -0.377 6.377 20 C -0.208 4.208 21 C -0.001 4.001 22 C -0.040 4.040 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.152 4.152 27 C -0.083 4.083 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.215 0.785 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.236 -2.153 -6.143 10.498 hybrid contribution 0.512 0.534 -0.225 0.773 sum 8.748 -1.619 -6.368 10.941 Atomic orbital electron populations 1.69855 1.06190 1.27389 1.48040 1.24926 0.94657 0.98543 0.93664 0.87254 0.82126 0.84218 0.78913 1.19837 1.20919 1.16904 1.20409 0.85799 0.95297 1.52630 0.90077 1.18450 0.98439 0.92877 0.89189 0.92360 1.21218 0.74203 0.90521 0.81437 1.90571 1.48659 1.35032 1.68824 1.47606 1.69866 1.10545 1.06223 1.22022 0.98324 0.85857 0.95722 1.21550 0.97285 1.00064 0.97132 1.21046 0.98185 0.91163 1.04849 1.20787 0.86534 0.91195 0.95670 0.94372 1.86631 1.34407 1.29110 1.87554 1.21968 0.98395 0.98863 1.01582 1.21128 0.95665 0.86747 0.96511 1.20174 0.92723 0.93731 0.97323 1.21030 0.97733 0.99667 0.96502 1.20870 1.00842 0.99256 0.94300 1.20870 0.99246 0.96979 0.98860 1.21062 0.98083 0.99325 0.96719 1.20930 0.97905 0.97410 0.92031 0.92152 0.87988 0.92832 0.92277 0.90327 0.91189 0.88710 0.78528 0.91504 0.90177 0.91527 0.89899 0.87299 0.87389 0.87416 0.87154 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.96 55.43 0.77 -23.93 16 2 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.85 19.03 26.30 -169.99 -4.47 14.56 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.25 -5.21 4.64 56.52 0.26 -4.94 16 7 C -0.50 -12.84 7.50 -34.44 -0.26 -13.10 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.03 0.71 0.99 -94.07 -0.09 0.62 16 10 H 0.06 1.23 3.75 -51.93 -0.19 1.04 16 11 C 0.54 11.46 6.70 -10.99 -0.07 11.38 16 12 O -0.55 -13.03 14.73 5.56 0.08 -12.95 16 13 N -0.61 -10.79 2.25 -172.75 -0.39 -11.18 16 14 C 0.10 1.65 5.77 -3.12 -0.02 1.63 16 15 C -0.12 -1.71 5.71 -27.48 -0.16 -1.87 16 16 C -0.11 -1.89 5.15 -28.02 -0.14 -2.04 16 17 C 0.12 1.67 2.87 -29.79 -0.09 1.58 16 18 H 0.04 0.47 7.36 -51.93 -0.38 0.09 16 19 O -0.57 -8.38 13.16 -35.23 -0.46 -8.84 16 20 C -0.17 -2.49 5.24 -28.58 -0.15 -2.64 16 21 C 0.12 1.85 5.42 -4.08 -0.02 1.83 16 22 C -0.04 -0.85 4.21 -104.62 -0.44 -1.29 16 23 C -0.13 -2.62 8.42 -39.58 -0.33 -2.96 16 24 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 25 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.13 -2.55 10.05 -39.58 -0.40 -2.94 16 27 C -0.06 -1.42 8.09 -39.59 -0.32 -1.74 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.10 1.90 4.53 -51.93 -0.24 1.66 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.09 1.96 7.48 -51.93 -0.39 1.57 16 35 H 0.37 3.61 9.04 45.56 0.41 4.02 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.08 1.32 7.24 -51.93 -0.38 0.95 16 40 H 0.11 2.01 7.32 -52.49 -0.38 1.63 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 2.83 7.72 -52.48 -0.41 2.43 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -30.63 341.93 -8.53 -39.16 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.83 Total: 13.08 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.39 Total: -15.04 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.39 Total: -35.12 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.38 Total: -21.79 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.47 Total: 14.56 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.63 -8.53 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413028965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.426 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds