Wall clock time and date at job start Tue Mar 31 2020 08:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47300 * 240.00099 * 3 2 1 5 5 H 1.48506 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46872 * 119.99904 * 3 2 1 7 7 C 1.37872 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00233 * 187.30507 * 7 2 1 9 9 C 1.50707 * 120.00437 * 7.30175 * 7 2 1 10 10 H 1.08998 * 109.46725 * 24.71678 * 9 7 2 11 11 C 1.50693 * 109.47261 * 144.71175 * 9 7 2 12 12 O 1.21287 * 119.99813 * 106.42541 * 11 9 7 13 13 N 1.34774 * 120.00370 * 286.42944 * 11 9 7 14 14 C 1.44584 * 118.64682 * 176.34605 * 13 11 9 15 15 C 1.54865 * 109.59720 * 270.70463 * 14 13 11 16 16 C 1.47098 * 110.32180 * 288.73073 * 15 14 13 17 17 C 1.52577 * 114.32391 * 62.79991 * 16 15 14 18 18 H 1.08998 * 109.48757 * 34.95805 * 17 16 15 19 19 O 1.42903 * 109.48318 * 155.00008 * 17 16 15 20 20 C 1.50882 * 109.35952 * 274.99004 * 17 16 15 21 21 C 1.47604 * 118.64328 * 356.07259 * 13 11 9 22 22 C 1.50696 * 109.47204 * 264.71784 * 9 7 2 23 23 C 1.38241 * 120.00272 * 126.53931 * 22 9 7 24 24 C 1.38227 * 119.99966 * 179.97438 * 23 22 9 25 25 C 1.38238 * 120.00400 * 0.02562 * 24 23 22 26 26 C 1.38241 * 119.99634 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.00007 * 0.03777 * 26 25 24 28 28 H 0.97001 * 119.99684 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.44739 * 30.73821 * 14 13 11 30 30 H 1.08995 * 109.44988 * 150.66658 * 14 13 11 31 31 H 1.08998 * 109.33117 * 48.98861 * 15 14 13 32 32 H 1.08993 * 109.32671 * 168.47273 * 15 14 13 33 33 H 1.09001 * 108.51211 * 184.05784 * 16 15 14 34 34 H 1.09002 * 108.51015 * 301.70937 * 16 15 14 35 35 H 0.96702 * 113.99494 * 179.97438 * 19 17 16 36 36 H 1.09000 * 109.36245 * 212.07980 * 20 17 16 37 37 H 1.09004 * 109.36487 * 331.69330 * 20 17 16 38 38 H 1.09000 * 108.95115 * 258.57866 * 21 13 11 39 39 H 1.09004 * 108.94701 * 17.20753 * 21 13 11 40 40 H 1.08001 * 119.99443 * 359.97438 * 23 22 9 41 41 H 1.07998 * 119.99984 * 180.02562 * 24 23 22 42 42 H 1.07995 * 120.00432 * 179.70262 * 25 24 23 43 43 H 1.08000 * 119.99424 * 179.97438 * 26 25 24 44 44 H 1.08004 * 119.99637 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0780 -1.1980 0.1184 9 6 1.2602 -2.4939 -0.1670 10 1 0.3229 -2.3110 -0.6924 11 6 2.1027 -3.4568 -0.9631 12 8 2.6389 -4.3937 -0.4102 13 7 2.2605 -3.2769 -2.2894 14 6 3.1388 -4.1707 -3.0105 15 6 4.5799 -3.6038 -2.9993 16 6 4.6695 -2.4187 -3.8660 17 6 3.7993 -1.2472 -3.4207 18 1 3.7628 -1.2147 -2.3319 19 8 4.3534 -0.0266 -3.9159 20 6 2.4038 -1.4251 -3.9662 21 6 1.5246 -2.1793 -2.9470 22 6 0.9692 -3.0833 1.1890 23 6 -0.3249 -3.4320 1.5280 24 6 -0.5916 -3.9732 2.7716 25 6 0.4355 -4.1652 3.6767 26 6 1.7295 -3.8165 3.3377 27 6 1.9963 -3.2751 2.0941 28 1 -0.4850 0.8401 -0.0004 29 1 3.1306 -5.1508 -2.5334 30 1 2.7942 -4.2658 -4.0402 31 1 4.8508 -3.3269 -1.9805 32 1 5.2705 -4.3667 -3.3587 33 1 5.7077 -2.0879 -3.8937 34 1 4.3714 -2.7045 -4.8748 35 1 3.8500 0.7618 -3.6707 36 1 1.9668 -0.4468 -4.1666 37 1 2.4483 -1.9959 -4.8937 38 1 0.6568 -2.5929 -3.4608 39 1 1.1823 -1.4772 -2.1867 40 1 -1.1273 -3.2816 0.8210 41 1 -1.6025 -4.2460 3.0362 42 1 0.2263 -4.5836 4.6501 43 1 2.5319 -3.9662 4.0450 44 1 3.0073 -3.0023 1.8296 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413028968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:53 Heat of formation + Delta-G solvation = -68.966960 kcal Electronic energy + Delta-G solvation = -26393.759310 eV Core-core repulsion = 22889.386577 eV Total energy + Delta-G solvation = -3504.372733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89868 -38.33833 -37.35094 -35.25438 -33.98625 -32.79818 -31.24709 -31.02750 -29.92505 -27.78395 -26.03501 -24.60138 -23.76376 -21.81804 -21.55743 -20.35528 -20.12008 -18.21414 -16.95303 -16.73187 -16.13711 -16.10689 -15.56557 -14.90606 -14.58386 -14.24561 -14.16778 -13.90472 -13.57324 -13.21487 -13.12348 -12.92126 -12.53151 -12.45635 -12.14113 -11.90909 -11.74129 -11.59325 -11.36599 -11.09292 -11.03957 -10.82705 -10.77720 -10.51984 -10.39367 -10.28519 -10.13309 -9.87881 -9.60927 -9.46357 -8.83078 -8.59085 -7.93429 -7.92823 -7.60406 -6.34783 -4.39446 2.38015 2.41462 3.11700 3.20481 3.22317 3.63102 3.82014 4.20879 4.43155 4.80287 4.98568 5.01796 5.13112 5.31722 5.40083 5.49846 5.70956 5.72566 5.72807 5.80249 5.87611 5.94159 5.98250 6.08995 6.16254 6.21787 6.24747 6.31586 6.41090 6.46042 6.50839 6.59307 6.62170 6.66557 6.82113 6.96757 7.13667 7.36594 7.38162 7.47433 7.57203 7.72987 7.94246 7.95302 8.01426 8.19662 8.62856 9.17759 9.24053 10.72629 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.006855 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.642414 B = 4083.776784 C = 5343.088269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.052 3.948 10 H 0.084 0.916 11 C 0.524 3.476 12 O -0.562 6.562 13 N -0.609 5.609 14 C 0.116 3.884 15 C -0.132 4.132 16 C -0.106 4.106 17 C 0.105 3.895 18 H 0.076 0.924 19 O -0.577 6.577 20 C -0.154 4.154 21 C 0.102 3.898 22 C -0.015 4.015 23 C -0.118 4.118 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.079 4.079 28 H 0.268 0.732 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.377 0.623 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -2.952 -5.504 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.031 3.969 10 H 0.102 0.898 11 C 0.315 3.685 12 O -0.440 6.440 13 N -0.342 5.342 14 C -0.008 4.008 15 C -0.170 4.170 16 C -0.144 4.144 17 C 0.046 3.954 18 H 0.094 0.906 19 O -0.384 6.384 20 C -0.193 4.193 21 C -0.020 4.020 22 C -0.016 4.016 23 C -0.137 4.137 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.154 4.154 27 C -0.097 4.097 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.224 0.776 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.323 -3.738 -5.493 7.039 hybrid contribution -0.044 1.459 0.211 1.475 sum 2.279 -2.279 -5.283 6.188 Atomic orbital electron populations 1.69930 1.05835 1.27581 1.47641 1.24935 0.94876 0.99203 0.94044 0.86637 0.79676 0.82550 0.79228 1.19765 1.21034 1.19939 1.20556 0.93529 0.88274 1.52197 0.92057 1.18149 0.97375 0.92218 0.89182 0.89781 1.21731 0.80738 0.84668 0.81329 1.90568 1.50800 1.32860 1.69790 1.47624 1.46484 1.31662 1.08415 1.21294 0.89036 0.94227 0.96257 1.21139 0.97776 0.97064 1.01056 1.20328 1.00431 0.94139 0.99468 1.21297 0.91141 0.83986 0.98936 0.90590 1.86397 1.56063 1.16458 1.79452 1.22469 0.96752 1.01207 0.98863 1.22192 0.92483 0.89817 0.97546 1.20064 0.92195 0.92125 0.97209 1.20975 0.96700 0.99489 0.96503 1.20883 0.98006 1.01578 0.94701 1.20797 0.93460 1.03464 0.98893 1.20968 0.96137 1.01339 0.97002 1.20839 0.99212 0.97074 0.92564 0.92203 0.90284 0.91705 0.91256 0.91173 0.91868 0.92415 0.77568 0.90582 0.92101 0.93093 0.85675 0.87115 0.87631 0.87778 0.87651 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.64 12.87 55.43 0.71 -20.93 16 2 C 0.07 1.77 4.99 -17.82 -0.09 1.68 16 3 Si 0.89 18.86 29.54 -169.99 -5.02 13.84 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.51 -12.07 6.37 -34.44 -0.22 -12.29 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.05 1.18 1.51 -94.08 -0.14 1.04 16 10 H 0.08 1.99 6.12 -51.93 -0.32 1.68 16 11 C 0.52 11.36 6.79 -10.99 -0.07 11.29 16 12 O -0.56 -13.39 14.64 5.55 0.08 -13.31 16 13 N -0.61 -11.05 2.23 -172.32 -0.38 -11.43 16 14 C 0.12 1.81 5.41 -4.08 -0.02 1.79 16 15 C -0.13 -1.95 5.74 -28.58 -0.16 -2.11 16 16 C -0.11 -1.54 4.86 -29.78 -0.14 -1.69 16 17 C 0.10 1.68 3.08 -28.01 -0.09 1.60 16 18 H 0.08 1.45 7.49 -51.93 -0.39 1.06 16 19 O -0.58 -9.16 13.22 -35.23 -0.47 -9.63 16 20 C -0.15 -2.26 5.42 -27.12 -0.15 -2.40 16 21 C 0.10 1.71 5.75 -2.76 -0.02 1.69 16 22 C -0.01 -0.34 4.44 -104.62 -0.46 -0.81 16 23 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 24 C -0.13 -2.56 10.05 -39.59 -0.40 -2.96 16 25 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 26 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.08 -1.77 8.07 -39.58 -0.32 -2.09 16 28 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 29 H 0.08 1.32 7.25 -51.93 -0.38 0.94 16 30 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.92 8.06 -51.93 -0.42 0.51 16 34 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 35 H 0.38 5.01 8.95 45.56 0.41 5.42 16 36 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 37 H 0.06 0.80 7.31 -51.93 -0.38 0.42 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.13 2.46 4.45 -51.93 -0.23 2.23 16 40 H 0.11 2.28 7.96 -52.49 -0.42 1.86 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.11 2.58 7.86 -52.48 -0.41 2.17 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -27.47 349.54 -9.10 -36.58 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.83 Total: 14.05 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -3.46 Total: -14.44 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.33 Total: -32.36 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.38 Total: -22.93 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.47 -9.10 -36.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413028968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.390 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds