Wall clock time and date at job start Tue Mar 31 2020 08:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86810 * 119.99901 * 2 1 4 4 H 1.48499 * 109.46915 * 94.34526 * 3 2 1 5 5 H 1.48499 * 109.46736 * 334.34495 * 3 2 1 6 6 H 1.48502 * 109.46957 * 214.34460 * 3 2 1 7 7 C 1.37875 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00045 * 354.22475 * 7 2 1 9 9 C 1.50706 * 119.99788 * 174.22773 * 7 2 1 10 10 H 1.08992 * 109.47446 * 27.01956 * 9 7 2 11 11 C 1.50706 * 109.47094 * 147.02413 * 9 7 2 12 12 O 1.21284 * 119.99983 * 101.03574 * 11 9 7 13 13 N 1.34772 * 119.99699 * 281.04111 * 11 9 7 14 14 C 1.47602 * 118.64663 * 359.72854 * 13 11 9 15 15 C 1.53599 * 112.33950 * 222.04402 * 14 13 11 16 16 C 1.50881 * 109.95704 * 40.83301 * 15 14 13 17 17 C 1.52574 * 109.35522 * 268.02592 * 16 15 14 18 18 H 1.08998 * 108.51401 * 323.75337 * 17 16 15 19 19 O 1.42895 * 108.51001 * 206.26561 * 17 16 15 20 20 C 1.47085 * 114.32594 * 85.01106 * 17 16 15 21 21 C 1.44585 * 118.64125 * 180.02562 * 13 11 9 22 22 C 1.50706 * 109.46695 * 267.01935 * 9 7 2 23 23 C 1.38233 * 120.00090 * 305.72479 * 22 9 7 24 24 C 1.38240 * 119.99499 * 179.76924 * 23 22 9 25 25 C 1.38231 * 120.00242 * 0.48102 * 24 23 22 26 26 C 1.38239 * 119.99802 * 359.79272 * 25 24 23 27 27 C 1.38230 * 120.00264 * 359.95641 * 26 25 24 28 28 H 0.97004 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.09002 * 108.94823 * 342.83985 * 14 13 11 30 30 H 1.09000 * 108.94603 * 101.46813 * 14 13 11 31 31 H 1.09001 * 109.51011 * 280.63602 * 15 14 13 32 32 H 1.09002 * 109.26395 * 160.87310 * 15 14 13 33 33 H 1.08998 * 109.49108 * 148.06641 * 16 15 14 34 34 H 1.08994 * 109.48828 * 27.98984 * 16 15 14 35 35 H 0.96703 * 114.00404 * 175.23103 * 19 17 16 36 36 H 1.09000 * 109.33011 * 176.93457 * 20 17 16 37 37 H 1.08997 * 109.19238 * 57.37193 * 20 17 16 38 38 H 1.08994 * 109.44670 * 209.28626 * 21 13 11 39 39 H 1.08998 * 109.45187 * 329.20643 * 21 13 11 40 40 H 1.08001 * 120.00229 * 359.97438 * 23 22 9 41 41 H 1.08000 * 119.99579 * 180.25024 * 24 23 22 42 42 H 1.07997 * 120.00211 * 179.77060 * 25 24 23 43 43 H 1.08004 * 119.99757 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00527 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5884 1.9934 1.3961 5 1 1.4035 2.6775 -0.6062 6 1 3.4977 1.4685 -0.7899 7 6 2.0044 -1.1940 -0.0005 8 1 1.4686 -2.1270 0.0932 9 6 3.5058 -1.1972 -0.1318 10 1 3.9064 -0.2604 0.2554 11 6 4.0762 -2.3502 0.6533 12 8 4.4172 -3.3638 0.0811 13 7 4.2073 -2.2550 1.9912 14 6 3.7884 -1.0056 2.6562 15 6 4.7797 -0.5614 3.7421 16 6 6.1953 -0.7742 3.2652 17 6 6.6741 -2.1552 3.7031 18 1 6.2572 -2.3702 4.6869 19 8 8.0984 -2.1269 3.8153 20 6 6.2991 -3.2445 2.7887 21 6 4.7586 -3.3786 2.7153 22 6 3.8827 -1.3428 -1.5837 23 6 3.3853 -2.3987 -2.3244 24 6 3.7273 -2.5294 -3.6574 25 6 4.5745 -1.6100 -4.2470 26 6 5.0763 -0.5572 -3.5048 27 6 4.7303 -0.4235 -2.1732 28 1 -0.4850 0.8401 0.0004 29 1 3.7062 -0.2170 1.9082 30 1 2.8116 -1.1592 3.1149 31 1 4.6121 -1.1436 4.6482 32 1 4.6263 0.4959 3.9583 33 1 6.8430 -0.0111 3.6967 34 1 6.2268 -0.7063 2.1779 35 1 8.4821 -2.9450 4.1598 36 1 6.7261 -4.1807 3.1485 37 1 6.6902 -3.0284 1.7945 38 1 4.3475 -3.3969 3.7245 39 1 4.4993 -4.3041 2.2013 40 1 2.7270 -3.1196 -1.8625 41 1 3.3356 -3.3521 -4.2372 42 1 4.8446 -1.7142 -5.2875 43 1 5.7386 0.1609 -3.9654 44 1 5.1226 0.3987 -1.5932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413028971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:56 Heat of formation + Delta-G solvation = -61.481936 kcal Electronic energy + Delta-G solvation = -26181.133468 eV Core-core repulsion = 22677.085310 eV Total energy + Delta-G solvation = -3504.048158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12503 -38.62797 -37.61127 -35.63361 -33.79802 -32.62029 -31.93784 -31.30446 -30.08894 -27.93429 -26.38390 -24.89731 -23.48490 -21.93739 -21.77572 -20.47301 -20.41924 -18.28697 -17.42586 -17.17375 -16.50933 -15.97394 -15.69610 -15.04410 -14.77285 -14.64350 -14.24163 -14.09670 -13.88305 -13.28847 -13.11509 -12.94810 -12.74203 -12.57632 -12.34713 -12.10039 -12.00815 -11.60072 -11.50955 -11.24600 -11.14351 -11.11987 -10.99110 -10.64152 -10.48230 -10.46471 -10.17127 -9.93649 -9.89573 -9.57305 -8.82583 -8.73868 -8.10547 -8.06956 -7.77987 -6.30612 -4.33492 2.18439 2.25855 3.08883 3.22224 3.24460 3.53917 3.61522 4.16730 4.20451 4.63715 4.69299 4.89572 5.01693 5.11304 5.22140 5.25488 5.41540 5.46890 5.58478 5.63662 5.68321 5.72374 5.77033 5.83625 5.92198 6.01245 6.07842 6.15183 6.19728 6.20626 6.32636 6.35230 6.39809 6.43291 6.48158 6.77110 6.90079 7.18619 7.22006 7.29808 7.31376 7.59862 7.64131 7.82803 7.97272 8.25286 8.71106 9.03475 9.26936 10.80729 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.006521 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.186300 B = 4292.907148 C = 5305.337075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.087 3.913 3 Si 0.853 3.147 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.506 4.506 8 H 0.081 0.919 9 C 0.031 3.969 10 H 0.060 0.940 11 C 0.534 3.466 12 O -0.554 6.554 13 N -0.607 5.607 14 C 0.111 3.889 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.114 3.886 18 H 0.045 0.955 19 O -0.575 6.575 20 C -0.169 4.169 21 C 0.124 3.876 22 C -0.036 4.036 23 C -0.064 4.064 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.133 4.133 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.372 0.628 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.611 -1.574 6.041 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.118 4.118 3 Si 0.679 3.321 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.543 4.543 8 H 0.099 0.901 9 C 0.010 3.990 10 H 0.078 0.922 11 C 0.325 3.675 12 O -0.432 6.432 13 N -0.341 5.341 14 C -0.011 4.011 15 C -0.172 4.172 16 C -0.148 4.148 17 C 0.056 3.944 18 H 0.063 0.937 19 O -0.381 6.381 20 C -0.208 4.208 21 C -0.001 4.001 22 C -0.037 4.037 23 C -0.083 4.083 24 C -0.151 4.151 25 C -0.160 4.160 26 C -0.151 4.151 27 C -0.152 4.152 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.491 -1.387 5.529 11.939 hybrid contribution 0.274 0.450 0.242 0.580 sum 10.765 -0.937 5.771 12.250 Atomic orbital electron populations 1.69855 1.06216 1.27449 1.48148 1.24938 0.94671 0.98584 0.93607 0.87226 0.81492 0.84155 0.79250 1.19449 1.20939 1.17558 1.20437 0.86350 0.95354 1.52203 0.90095 1.18452 0.98614 0.93359 0.88578 0.92218 1.21232 0.75053 0.89774 0.81467 1.90578 1.50634 1.32606 1.69376 1.47560 1.64001 1.15255 1.07236 1.21939 0.96769 0.86491 0.95938 1.21725 0.94429 1.02233 0.98779 1.21022 0.95890 0.95412 1.02457 1.20788 0.80482 0.95792 0.97380 0.93735 1.86572 1.21138 1.41756 1.88631 1.21957 0.98291 0.98565 1.02005 1.21118 0.91224 0.90983 0.96743 1.20124 0.92965 0.93538 0.97079 1.20891 0.97533 0.97088 0.92742 1.21049 0.99320 0.99255 0.95488 1.20863 0.99879 0.96251 0.98983 1.20873 1.01225 0.98506 0.94522 1.21038 0.99198 0.99626 0.95293 0.92120 0.89235 0.91117 0.91538 0.90179 0.90969 0.90913 0.78130 0.91181 0.90560 0.91288 0.89788 0.86220 0.87166 0.87406 0.87364 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 13.96 55.43 0.77 -24.05 16 2 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.85 19.13 26.08 -169.99 -4.43 14.70 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.25 -5.39 5.13 56.52 0.29 -5.10 16 7 C -0.51 -12.98 7.70 -34.44 -0.27 -13.25 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 C 0.03 0.71 1.07 -94.07 -0.10 0.61 16 10 H 0.06 1.29 3.44 -51.93 -0.18 1.12 16 11 C 0.53 11.48 6.75 -10.98 -0.07 11.41 16 12 O -0.55 -13.03 14.53 5.55 0.08 -12.95 16 13 N -0.61 -10.79 2.25 -172.79 -0.39 -11.18 16 14 C 0.11 1.81 5.62 -3.13 -0.02 1.79 16 15 C -0.13 -1.68 5.70 -27.48 -0.16 -1.83 16 16 C -0.11 -1.47 5.16 -28.01 -0.14 -1.61 16 17 C 0.11 1.39 2.87 -29.79 -0.09 1.31 16 18 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 19 O -0.58 -7.00 13.16 -35.23 -0.46 -7.46 16 20 C -0.17 -2.23 5.23 -28.62 -0.15 -2.38 16 21 C 0.12 1.83 5.38 -4.11 -0.02 1.81 16 22 C -0.04 -0.81 4.50 -104.62 -0.47 -1.28 16 23 C -0.06 -1.44 8.01 -39.58 -0.32 -1.75 16 24 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 25 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 26 C -0.13 -2.44 10.05 -39.58 -0.40 -2.83 16 27 C -0.13 -2.74 8.94 -39.58 -0.35 -3.10 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.09 1.63 4.26 -51.93 -0.22 1.40 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.73 7.32 -51.93 -0.38 0.35 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.91 8.07 -51.93 -0.42 0.50 16 34 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16 35 H 0.37 2.90 9.04 45.56 0.41 3.31 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.85 8.07 -51.93 -0.42 0.44 16 39 H 0.08 1.36 7.30 -51.93 -0.38 0.98 16 40 H 0.12 2.81 7.75 -52.49 -0.41 2.40 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.11 2.10 7.12 -52.49 -0.37 1.73 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -30.69 342.16 -8.49 -39.18 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.77 Total: 11.44 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.45 Total: -14.83 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.38 Total: -35.23 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.38 Total: -20.41 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.43 Total: 14.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.69 -8.49 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413028971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds