Wall clock time and date at job start Tue Mar 31 2020 08:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00115 * 2 1 4 4 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47038 * 120.00155 * 3 2 1 6 6 H 1.48498 * 109.47233 * 240.00219 * 3 2 1 7 7 C 1.37881 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99845 * 173.46327 * 7 2 1 9 9 C 1.50693 * 119.99815 * 353.45428 * 7 2 1 10 10 H 1.09002 * 109.47418 * 326.78117 * 9 7 2 11 11 C 1.50704 * 109.47439 * 206.77375 * 9 7 2 12 12 O 1.21279 * 120.00302 * 240.00633 * 11 9 7 13 13 N 1.34779 * 119.99436 * 60.00382 * 11 9 7 14 14 C 1.46497 * 119.99719 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47364 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.47148 * 59.99906 * 15 14 13 17 17 O 1.42901 * 109.46944 * 300.00190 * 15 14 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 19 19 C 1.53781 * 113.61376 * 277.49808 * 18 15 14 20 20 C 1.53783 * 87.07772 * 220.01615 * 19 18 15 21 21 C 1.53783 * 87.08480 * 25.43396 * 20 19 18 22 22 C 1.50706 * 109.47160 * 86.77601 * 9 7 2 23 23 C 1.38245 * 119.99323 * 52.96770 * 22 9 7 24 24 C 1.38237 * 119.99094 * 179.78969 * 23 22 9 25 25 C 1.38235 * 120.00776 * 0.44132 * 24 23 22 26 26 C 1.38233 * 119.99369 * 359.81414 * 25 24 23 27 27 C 1.38230 * 120.00270 * 233.24149 * 22 9 7 28 28 H 0.97003 * 120.00089 * 174.55174 * 1 2 3 29 29 H 0.96998 * 120.00461 * 0.02562 * 13 11 9 30 30 H 1.08999 * 109.47106 * 300.00284 * 14 13 11 31 31 H 1.09002 * 109.47508 * 60.00073 * 14 13 11 32 32 H 0.96708 * 113.99663 * 299.99429 * 17 15 14 33 33 H 1.09003 * 112.84586 * 48.80371 * 18 15 14 34 34 H 1.08994 * 113.61346 * 334.56570 * 19 18 15 35 35 H 1.09000 * 113.61125 * 105.47372 * 19 18 15 36 36 H 1.08999 * 113.61817 * 270.88008 * 20 19 18 37 37 H 1.09001 * 113.68873 * 139.99276 * 20 19 18 38 38 H 1.08997 * 113.61507 * 220.02043 * 21 20 19 39 39 H 1.08997 * 113.61627 * 89.11152 * 21 20 19 40 40 H 1.07993 * 119.99971 * 0.02562 * 23 22 9 41 41 H 1.08007 * 119.99517 * 180.27674 * 24 23 22 42 42 H 1.07995 * 120.00434 * 179.83260 * 25 24 23 43 43 H 1.08007 * 119.99900 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.99906 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1970 -0.1070 9 6 1.2584 -2.4949 0.1477 10 1 0.3920 -2.3455 0.7919 11 6 2.1678 -3.5287 0.7604 12 8 2.4195 -4.5496 0.1559 13 7 2.7014 -3.3187 1.9801 14 6 3.5858 -4.3234 2.5755 15 6 4.0509 -3.8422 3.9514 16 1 3.1847 -3.6929 4.5960 17 8 4.7581 -2.6085 3.8106 18 6 4.9741 -4.8917 4.5735 19 6 4.2222 -6.0411 5.2652 20 6 5.2916 -5.9720 6.3682 21 6 5.4996 -4.5025 5.9654 22 6 0.8006 -2.9687 -1.2078 23 6 1.7104 -3.0876 -2.2419 24 6 1.2913 -3.5264 -3.4839 25 6 -0.0390 -3.8375 -3.6946 26 6 -0.9496 -3.7135 -2.6619 27 6 -0.5298 -3.2789 -1.4185 28 1 -0.4850 -0.8363 -0.0798 29 1 2.4998 -2.5024 2.4637 30 1 3.0465 -5.2645 2.6824 31 1 4.4523 -4.4724 1.9312 32 1 5.5429 -2.6670 3.2484 33 1 5.7544 -5.2273 3.8904 34 1 3.2242 -5.7668 5.6068 35 1 4.2363 -6.9738 4.7013 36 1 6.1584 -6.6043 6.1763 37 1 4.8914 -6.0964 7.3745 38 1 6.5447 -4.1931 5.9668 39 1 4.8507 -3.8076 6.4984 40 1 2.7491 -2.8414 -2.0782 41 1 2.0029 -3.6236 -4.2907 42 1 -0.3669 -4.1777 -4.6657 43 1 -1.9889 -3.9569 -2.8263 44 1 -1.2412 -3.1822 -0.6117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418038033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:34 Heat of formation + Delta-G solvation = -62.091997 kcal Electronic energy + Delta-G solvation = -24724.902204 eV Core-core repulsion = 21220.827592 eV Total energy + Delta-G solvation = -3504.074612 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76467 -39.07142 -37.79070 -36.35783 -33.93961 -33.63513 -30.85973 -30.02623 -29.61380 -27.25661 -25.80394 -24.94262 -23.56666 -21.90094 -21.62847 -20.89420 -19.83504 -19.33875 -17.37749 -16.91666 -16.32007 -15.89084 -15.74117 -15.29445 -14.93297 -14.48193 -14.29239 -13.96372 -13.79743 -13.59925 -13.25637 -12.84032 -12.63251 -12.57888 -12.41081 -12.20109 -12.06961 -11.83738 -11.56691 -11.46042 -10.98389 -10.92593 -10.82439 -10.68509 -10.42530 -10.29867 -10.19154 -10.14792 -9.78008 -8.96937 -8.80397 -8.59800 -8.40700 -8.02757 -7.64788 -6.52796 -4.29844 2.28334 2.33239 3.38654 3.39300 3.58090 3.61460 3.82412 4.23045 4.41001 4.43144 4.52907 4.61729 4.76658 4.78412 4.99036 5.14199 5.19293 5.27141 5.52360 5.54157 5.57204 5.65927 5.69932 5.70316 5.76227 5.80811 5.85214 5.93759 6.09236 6.10885 6.24352 6.29491 6.40503 6.47319 6.63670 6.87952 6.97794 7.12893 7.28917 7.35627 7.59889 7.64405 7.83572 7.96145 8.22400 8.32617 8.63619 9.15236 9.42268 10.84881 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.004234 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.158421 B = 6611.153530 C = 8118.747045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.032 3.968 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.591 4.591 8 H 0.057 0.943 9 C 0.043 3.957 10 H 0.064 0.936 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.724 5.724 14 C 0.091 3.909 15 C 0.107 3.893 16 H 0.102 0.898 17 O -0.552 6.552 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.124 4.124 22 C -0.019 4.019 23 C -0.078 4.078 24 C -0.133 4.133 25 C -0.146 4.146 26 C -0.129 4.129 27 C -0.128 4.128 28 H 0.274 0.726 29 H 0.409 0.591 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.375 0.625 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 -8.430 8.069 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.628 4.628 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.081 0.919 11 C 0.322 3.678 12 O -0.447 6.447 13 N -0.377 5.377 14 C -0.034 4.034 15 C 0.047 3.953 16 H 0.120 0.880 17 O -0.356 6.356 18 C -0.162 4.162 19 C -0.172 4.172 20 C -0.182 4.182 21 C -0.162 4.162 22 C -0.020 4.020 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.165 4.165 26 C -0.147 4.147 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.245 0.755 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.679 -7.300 8.112 12.794 hybrid contribution 0.542 -1.557 -0.386 1.693 sum 7.221 -8.856 7.726 13.794 Atomic orbital electron populations 1.70775 1.06924 1.31355 1.43806 1.25850 0.96322 1.02543 0.92749 0.83570 0.75022 0.75193 0.76810 1.20688 1.21037 1.21324 1.21541 0.94610 0.89500 1.57182 0.92462 1.18161 0.95613 0.93518 0.90485 0.91852 1.21299 0.79961 0.86780 0.79793 1.90581 1.62656 1.29539 1.61897 1.45807 1.49520 1.22727 1.19634 1.21871 0.94810 0.92852 0.93819 1.22187 0.94224 0.83957 0.94895 0.87990 1.86613 1.44216 1.32058 1.72758 1.23235 0.99206 0.96780 0.96993 1.22885 0.98414 0.98381 0.97473 1.22842 0.99233 0.97299 0.98844 1.22787 1.01414 0.96369 0.95620 1.20138 0.92523 0.92338 0.97010 1.20793 0.99497 0.97273 0.92086 1.20987 0.95638 1.01355 0.97114 1.20818 0.93798 1.03542 0.98295 1.20886 0.98538 1.01560 0.93698 1.20973 0.95903 1.00860 0.96920 0.91449 0.75524 0.91564 0.92170 0.77788 0.88890 0.89827 0.91265 0.90353 0.91504 0.91558 0.89790 0.87024 0.87420 0.87514 0.87391 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.56 55.43 0.75 -24.35 16 2 C 0.03 0.86 5.45 -17.82 -0.10 0.76 16 3 Si 1.07 23.77 29.91 -169.99 -5.08 18.68 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.59 -15.13 7.42 -34.44 -0.26 -15.39 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.04 1.05 1.92 -94.07 -0.18 0.87 16 10 H 0.06 1.58 6.82 -51.93 -0.35 1.23 16 11 C 0.53 11.97 7.04 -10.98 -0.08 11.89 16 12 O -0.57 -13.95 15.46 5.56 0.09 -13.86 16 13 N -0.72 -13.39 5.35 -60.29 -0.32 -13.71 16 14 C 0.09 1.35 5.33 -4.04 -0.02 1.33 16 15 C 0.11 1.25 2.82 -26.73 -0.08 1.18 16 16 H 0.10 1.21 7.94 -51.93 -0.41 0.80 16 17 O -0.55 -7.06 12.88 -35.23 -0.45 -7.52 16 18 C -0.14 -1.35 3.33 -89.81 -0.30 -1.65 16 19 C -0.13 -1.18 7.63 -25.92 -0.20 -1.37 16 20 C -0.14 -1.14 8.08 -25.92 -0.21 -1.35 16 21 C -0.12 -1.09 7.44 -25.92 -0.19 -1.28 16 22 C -0.02 -0.45 4.03 -104.62 -0.42 -0.88 16 23 C -0.08 -1.81 8.36 -39.58 -0.33 -2.15 16 24 C -0.13 -2.69 10.05 -39.58 -0.40 -3.08 16 25 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 27 C -0.13 -2.83 9.25 -39.58 -0.37 -3.20 16 28 H 0.27 7.63 6.30 -40.82 -0.26 7.37 16 29 H 0.41 7.53 8.23 -40.82 -0.34 7.20 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.38 3.82 9.05 45.56 0.41 4.23 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.11 2.64 7.86 -52.49 -0.41 2.23 16 41 H 0.11 1.86 8.06 -52.48 -0.42 1.43 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 44 H 0.11 2.26 7.96 -52.49 -0.42 1.84 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -30.92 365.92 -9.47 -40.40 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -6.05 Total: 15.26 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -3.92 Total: -20.41 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.43 Total: -38.06 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.37 Total: -21.38 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.08 Total: 18.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.92 -9.47 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418038033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.697 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds