Wall clock time and date at job start Tue Mar 31 2020 08:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48495 * 109.47395 * 270.00483 * 3 2 1 5 5 H 1.48503 * 109.47177 * 30.00702 * 3 2 1 6 6 H 1.48497 * 109.47036 * 150.00250 * 3 2 1 7 7 C 1.37876 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99710 * 186.38636 * 7 2 1 9 9 C 1.50697 * 120.00192 * 6.38459 * 7 2 1 10 10 H 1.08997 * 109.47059 * 333.93390 * 9 7 2 11 11 C 1.50702 * 109.47046 * 213.93533 * 9 7 2 12 12 O 1.21284 * 119.99604 * 239.99526 * 11 9 7 13 13 N 1.34774 * 120.00177 * 60.00553 * 11 9 7 14 14 C 1.46496 * 120.00275 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.53655 * 324.99535 * 14 13 11 16 16 C 1.54198 * 109.54040 * 204.83030 * 14 13 11 17 17 C 1.46280 * 111.99137 * 162.60113 * 16 14 13 18 18 C 1.54123 * 112.20383 * 61.41281 * 17 16 14 19 19 O 1.40323 * 108.70423 * 280.44587 * 18 17 16 20 20 C 1.43989 * 116.58220 * 95.03688 * 19 18 17 21 21 C 1.50626 * 109.54084 * 85.15593 * 14 13 11 22 22 C 1.50699 * 109.47240 * 93.93235 * 9 7 2 23 23 C 1.38238 * 119.99687 * 53.84945 * 22 9 7 24 24 C 1.38238 * 119.99806 * 179.76165 * 23 22 9 25 25 C 1.38237 * 120.00303 * 0.49027 * 24 23 22 26 26 C 1.38246 * 119.99342 * 359.78728 * 25 24 23 27 27 C 1.38230 * 120.00430 * 359.95620 * 26 25 24 28 28 H 0.97002 * 120.00025 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99758 * 359.97438 * 13 11 9 30 30 H 1.08998 * 108.97709 * 283.24968 * 16 14 13 31 31 H 1.09004 * 108.97803 * 42.03776 * 16 14 13 32 32 H 1.09000 * 108.94334 * 182.11281 * 17 16 14 33 33 H 1.09000 * 108.93874 * 300.80398 * 17 16 14 34 34 H 1.09007 * 109.59160 * 40.20470 * 18 17 16 35 35 H 1.08992 * 109.60271 * 160.51468 * 18 17 16 36 36 H 1.09004 * 108.69091 * 78.90738 * 20 19 18 37 37 H 1.09001 * 108.69374 * 197.00741 * 20 19 18 38 38 H 1.09005 * 108.88307 * 330.97645 * 21 14 13 39 39 H 1.08997 * 108.88148 * 89.43313 * 21 14 13 40 40 H 1.07994 * 120.00080 * 359.97438 * 23 22 9 41 41 H 1.08004 * 120.00125 * 180.24874 * 24 23 22 42 42 H 1.07994 * 120.00251 * 179.76117 * 25 24 23 43 43 H 1.08001 * 119.99064 * 179.97438 * 26 25 24 44 44 H 1.07990 * 120.00163 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1970 0.1035 9 6 1.2580 -2.4950 -0.1462 10 1 0.2376 -2.3710 0.2163 11 6 1.9505 -3.5644 0.6587 12 8 2.3789 -4.5563 0.1077 13 7 2.0936 -3.4187 1.9909 14 6 2.7673 -4.4579 2.7733 15 1 2.5387 -5.4370 2.3522 16 6 2.2811 -4.3993 4.2355 17 6 2.5865 -5.6303 4.9641 18 6 4.1019 -5.9008 5.0412 19 8 4.5227 -6.4547 3.8225 20 6 5.0549 -5.5382 2.8478 21 6 4.2557 -4.2296 2.7384 22 6 1.2298 -2.8981 -1.5980 23 6 2.4095 -2.9906 -2.3127 24 6 2.3841 -3.3652 -3.6431 25 6 1.1782 -3.6374 -4.2617 26 6 -0.0020 -3.5394 -3.5484 27 6 0.0238 -3.1700 -2.2166 28 1 -0.4850 0.8401 0.0004 29 1 1.7511 -2.6253 2.4315 30 1 2.7654 -3.5612 4.7367 31 1 1.2025 -4.2418 4.2444 32 1 2.1897 -5.5502 5.9762 33 1 2.1042 -6.4683 4.4608 34 1 4.6316 -4.9650 5.2197 35 1 4.3080 -6.5982 5.8530 36 1 6.0832 -5.2986 3.1186 37 1 5.0556 -6.0262 1.8732 38 1 4.5148 -3.7346 1.8024 39 1 4.5323 -3.5787 3.5677 40 1 3.3512 -2.7735 -1.8307 41 1 3.3061 -3.4413 -4.2004 42 1 1.1580 -3.9263 -5.3020 43 1 -0.9442 -3.7517 -4.0318 44 1 -0.8981 -3.0938 -1.6594 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433456877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:04 Heat of formation + Delta-G solvation = -72.940619 kcal Electronic energy + Delta-G solvation = -25342.341407 eV Core-core repulsion = 21837.796363 eV Total energy + Delta-G solvation = -3504.545044 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82458 -38.77675 -37.63211 -35.29981 -33.65092 -33.01323 -31.30838 -30.92352 -29.94006 -27.53371 -26.44776 -25.16130 -23.74958 -21.61371 -21.17396 -20.93237 -20.09953 -19.14373 -16.80303 -16.77531 -16.54824 -16.01394 -15.79327 -15.31195 -14.67750 -14.53958 -14.12015 -13.95010 -13.91318 -13.56406 -13.24111 -12.96207 -12.75273 -12.49817 -12.31826 -12.17038 -11.69889 -11.49166 -11.45043 -11.23151 -11.08657 -11.03010 -10.70870 -10.55667 -10.41625 -10.38219 -10.27541 -9.98630 -9.48701 -9.44774 -8.79520 -8.56690 -8.31863 -7.94918 -7.61515 -6.29987 -4.34970 2.37217 2.40213 3.18164 3.25832 3.26879 3.70046 3.83486 4.06156 4.26859 4.70728 4.80245 4.82541 4.96874 5.07695 5.11995 5.25019 5.38883 5.48105 5.58843 5.64255 5.72033 5.78859 5.83469 5.89061 5.95634 5.98002 6.13174 6.18663 6.21192 6.25723 6.36001 6.47055 6.55111 6.60791 6.87208 6.97515 7.17513 7.28981 7.36680 7.40416 7.44628 7.60694 7.75350 7.95398 8.06890 8.42347 8.69396 9.26250 9.32197 10.78716 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.004997 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.533348 B = 5602.404117 C = 6876.661068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.048 3.952 10 H 0.091 0.909 11 C 0.528 3.472 12 O -0.567 6.567 13 N -0.727 5.727 14 C 0.151 3.849 15 H 0.087 0.913 16 C -0.127 4.127 17 C -0.147 4.147 18 C 0.066 3.934 19 O -0.386 6.386 20 C 0.069 3.931 21 C -0.163 4.163 22 C -0.011 4.011 23 C -0.084 4.084 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.120 4.120 28 H 0.267 0.733 29 H 0.404 0.596 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -6.463 6.908 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.109 0.891 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.378 5.378 14 C 0.045 3.955 15 H 0.105 0.895 16 C -0.165 4.165 17 C -0.185 4.185 18 C -0.012 4.012 19 O -0.305 6.305 20 C -0.008 4.008 21 C -0.202 4.202 22 C -0.012 4.012 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.383 -7.221 6.479 10.646 hybrid contribution 0.272 1.858 0.162 1.885 sum 4.655 -5.363 6.641 9.723 Atomic orbital electron populations 1.69882 1.06005 1.27440 1.48197 1.24952 0.94883 0.99428 0.93717 0.86513 0.79824 0.82767 0.78526 1.20307 1.21054 1.19693 1.20660 0.93393 0.88669 1.52384 0.92048 1.18138 0.99804 0.91817 0.87567 0.89099 1.21602 0.77867 0.87045 0.81679 1.90582 1.51116 1.32033 1.70817 1.46035 1.60569 1.23107 1.08114 1.20446 0.90742 0.93651 0.90643 0.89464 1.20863 1.02185 0.98493 0.94924 1.21063 0.97746 0.98879 1.00781 1.22335 0.93575 0.98531 0.86732 1.87456 1.82322 1.35363 1.25345 1.22884 0.95108 0.90403 0.92383 1.22371 0.96505 0.97728 1.03575 1.20061 0.92088 0.91874 0.97186 1.20815 0.98294 0.97920 0.93233 1.20959 0.97038 1.01838 0.95421 1.20801 0.93054 1.03968 0.98875 1.20904 0.97230 1.01991 0.94859 1.20999 0.97827 1.00334 0.94691 0.92321 0.76086 0.91814 0.91056 0.91152 0.90922 0.93072 0.90119 0.93385 0.89149 0.89740 0.92047 0.87161 0.87605 0.87710 0.87556 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.99 12.78 55.43 0.71 -22.28 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 3 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.51 -12.66 7.46 -34.44 -0.26 -12.92 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.05 1.13 2.44 -94.08 -0.23 0.90 16 10 H 0.09 2.28 7.00 -51.93 -0.36 1.92 16 11 C 0.53 11.59 6.84 -10.99 -0.08 11.51 16 12 O -0.57 -13.61 15.09 5.55 0.08 -13.52 16 13 N -0.73 -13.23 4.90 -54.35 -0.27 -13.49 16 14 C 0.15 2.34 2.15 -68.49 -0.15 2.19 16 15 H 0.09 1.56 7.27 -51.93 -0.38 1.19 16 16 C -0.13 -1.54 4.83 -29.30 -0.14 -1.68 16 17 C -0.15 -1.57 5.47 -29.34 -0.16 -1.73 16 18 C 0.07 0.70 6.38 37.74 0.24 0.94 16 19 O -0.39 -5.22 10.17 -33.69 -0.34 -5.56 16 20 C 0.07 0.91 6.66 37.53 0.25 1.16 16 21 C -0.16 -2.34 5.00 -27.55 -0.14 -2.48 16 22 C -0.01 -0.26 4.30 -104.62 -0.45 -0.71 16 23 C -0.08 -1.90 8.31 -39.58 -0.33 -2.23 16 24 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 25 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 26 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 27 C -0.12 -2.64 9.67 -39.58 -0.38 -3.02 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.40 7.08 8.49 -40.82 -0.35 6.74 16 30 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.05 0.51 6.98 -51.92 -0.36 0.14 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.41 7.82 -51.93 -0.41 1.01 16 39 H 0.06 0.78 6.84 -51.93 -0.36 0.43 16 40 H 0.11 2.50 7.89 -52.49 -0.41 2.08 16 41 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -28.54 355.91 -9.37 -37.91 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.79 Total: 12.25 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -3.11 Total: -15.49 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.44 Total: -35.77 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.26 Total: -19.09 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.54 -9.37 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433456877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.027 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds