Wall clock time and date at job start Tue Mar 31 2020 08:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99551 * 2 1 4 4 H 1.48503 * 109.46870 * 239.99778 * 3 2 1 5 5 H 1.48495 * 109.47399 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46820 * 120.00321 * 3 2 1 7 7 C 1.37868 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99833 * 186.38942 * 7 2 1 9 9 C 1.50697 * 120.00491 * 6.38778 * 7 2 1 10 10 H 1.08998 * 109.47201 * 333.94175 * 9 7 2 11 11 C 1.50698 * 109.47541 * 213.94256 * 9 7 2 12 12 O 1.21282 * 120.00268 * 240.00111 * 11 9 7 13 13 N 1.34772 * 120.00258 * 59.99780 * 11 9 7 14 14 C 1.46492 * 120.00451 * 180.02562 * 13 11 9 15 15 H 1.08998 * 108.75645 * 36.65340 * 14 13 11 16 16 C 1.50295 * 108.79170 * 154.99931 * 14 13 11 17 17 C 1.54263 * 108.48402 * 212.99083 * 16 14 13 18 18 C 1.45989 * 111.73669 * 281.94142 * 17 16 14 19 19 O 1.44236 * 112.09173 * 60.06682 * 18 17 16 20 20 C 1.39958 * 112.38156 * 277.43135 * 19 18 17 21 21 C 1.54360 * 112.58246 * 97.11441 * 20 19 18 22 22 C 1.50703 * 109.47257 * 93.93786 * 9 7 2 23 23 C 1.38237 * 119.99401 * 53.85087 * 22 9 7 24 24 C 1.38241 * 119.99650 * 179.76599 * 23 22 9 25 25 C 1.38238 * 119.99940 * 0.50620 * 24 23 22 26 26 C 1.38236 * 119.99692 * 359.74969 * 25 24 23 27 27 C 1.38228 * 120.00163 * 234.12349 * 22 9 7 28 28 H 0.96996 * 119.99936 * 0.02562 * 1 2 3 29 29 H 0.97010 * 119.99669 * 0.02562 * 13 11 9 30 30 H 1.08997 * 109.63427 * 93.28637 * 16 14 13 31 31 H 1.09001 * 109.79665 * 332.78451 * 16 14 13 32 32 H 1.09003 * 109.02453 * 161.36643 * 17 16 14 33 33 H 1.08993 * 109.02699 * 42.52438 * 17 16 14 34 34 H 1.08998 * 108.95541 * 180.74177 * 18 17 16 35 35 H 1.09007 * 108.95881 * 299.39613 * 18 17 16 36 36 H 1.09005 * 108.86295 * 336.31902 * 20 19 18 37 37 H 1.09002 * 108.86450 * 217.91063 * 20 19 18 38 38 H 1.09000 * 109.08628 * 198.80465 * 21 20 19 39 39 H 1.09001 * 109.08250 * 79.81432 * 21 20 19 40 40 H 1.08000 * 120.00172 * 359.97438 * 23 22 9 41 41 H 1.08000 * 119.99974 * 180.23252 * 24 23 22 42 42 H 1.07996 * 120.00198 * 179.72170 * 25 24 23 43 43 H 1.08004 * 119.99792 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00546 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1969 0.1036 9 6 1.2582 -2.4950 -0.1463 10 1 0.2377 -2.3710 0.2160 11 6 1.9505 -3.5644 0.6588 12 8 2.3791 -4.5562 0.1079 13 7 2.0935 -3.4186 1.9909 14 6 2.7670 -4.4578 2.7735 15 1 3.5865 -4.8661 2.1821 16 6 3.3322 -3.8357 4.0194 17 6 4.6360 -4.5740 4.3865 18 6 4.3682 -5.8551 5.0334 19 8 3.6090 -6.7422 4.1865 20 6 2.2350 -6.4810 4.2371 21 6 1.7575 -5.5907 3.0700 22 6 1.2302 -2.8982 -1.5981 23 6 2.4100 -2.9906 -2.3126 24 6 2.3848 -3.3651 -3.6430 25 6 1.1789 -3.6370 -4.2618 26 6 -0.0013 -3.5395 -3.5487 27 6 0.0244 -3.1701 -2.2168 28 1 -0.4850 0.8400 -0.0004 29 1 1.7504 -2.6254 2.4316 30 1 2.6150 -3.9317 4.8345 31 1 3.5458 -2.7817 3.8416 32 1 5.2196 -3.9495 5.0630 33 1 5.2134 -4.7482 3.4786 34 1 5.3165 -6.3302 5.2842 35 1 3.8089 -5.6778 5.9521 36 1 2.0056 -5.9811 5.1782 37 1 1.6949 -7.4272 4.2021 38 1 0.7941 -5.1510 3.3282 39 1 1.6398 -6.2056 2.1777 40 1 3.3517 -2.7734 -1.8304 41 1 3.3069 -3.4409 -4.2002 42 1 1.1588 -3.9253 -5.3024 43 1 -0.9435 -3.7515 -4.0322 44 1 -0.8978 -3.0932 -1.6600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433456879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:07 Heat of formation + Delta-G solvation = -69.927115 kcal Electronic energy + Delta-G solvation = -25279.212705 eV Core-core repulsion = 21774.798336 eV Total energy + Delta-G solvation = -3504.414368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87214 -38.84480 -37.65668 -35.20483 -33.62829 -33.05777 -31.25603 -30.87215 -29.92105 -27.56491 -26.67797 -24.80145 -23.70885 -21.70029 -21.57935 -20.95018 -19.86369 -19.14852 -16.76688 -16.63403 -16.47836 -16.06555 -15.78447 -15.44702 -14.71043 -14.47145 -14.32290 -13.90609 -13.80764 -13.39827 -13.22265 -12.88712 -12.69392 -12.47681 -12.32436 -12.28845 -11.68350 -11.53841 -11.35560 -11.13338 -11.04863 -11.02953 -10.88637 -10.66228 -10.39689 -10.27538 -10.25859 -9.96262 -9.65944 -9.44058 -8.76115 -8.53167 -8.24200 -7.92942 -7.59464 -6.28076 -4.32901 2.39026 2.42138 3.19943 3.25926 3.28701 3.77617 3.84111 4.03340 4.28696 4.68683 4.84422 4.94287 5.02031 5.06096 5.09584 5.13915 5.38771 5.46167 5.58658 5.61735 5.73483 5.76672 5.79102 5.80927 5.91250 5.93787 6.12000 6.19118 6.22038 6.27880 6.48600 6.48930 6.56456 6.62989 6.89023 6.99484 7.19498 7.23209 7.33167 7.38366 7.46624 7.62714 7.77483 7.97460 8.09259 8.45977 8.71431 9.29579 9.35296 10.80574 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.004952 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.591262 B = 5653.053454 C = 7079.977485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.048 3.952 10 H 0.091 0.909 11 C 0.527 3.473 12 O -0.566 6.566 13 N -0.729 5.729 14 C 0.150 3.850 15 H 0.082 0.918 16 C -0.128 4.128 17 C -0.152 4.152 18 C 0.060 3.940 19 O -0.370 6.370 20 C 0.065 3.935 21 C -0.157 4.157 22 C -0.011 4.011 23 C -0.084 4.084 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.267 0.733 29 H 0.403 0.597 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -6.845 8.159 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.109 0.891 11 C 0.317 3.683 12 O -0.445 6.445 13 N -0.381 5.381 14 C 0.045 3.955 15 H 0.100 0.900 16 C -0.166 4.166 17 C -0.190 4.190 18 C -0.017 4.017 19 O -0.288 6.288 20 C -0.013 4.013 21 C -0.197 4.197 22 C -0.012 4.012 23 C -0.102 4.102 24 C -0.152 4.152 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.238 0.762 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.549 -7.563 7.650 11.327 hybrid contribution 0.072 1.689 0.203 1.703 sum 3.621 -5.874 7.852 10.453 Atomic orbital electron populations 1.69874 1.06007 1.27531 1.48205 1.24950 0.94879 0.99407 0.93733 0.86571 0.79653 0.82437 0.78956 1.19903 1.21109 1.20030 1.20635 0.93399 0.88707 1.52394 0.92081 1.18136 0.99744 0.91859 0.87578 0.89145 1.21591 0.77892 0.87030 0.81785 1.90582 1.50749 1.32213 1.70982 1.46181 1.60965 1.22834 1.08115 1.20615 0.95037 0.87972 0.91908 0.90029 1.21634 0.96696 1.00641 0.97607 1.21135 0.98369 0.96898 1.02614 1.21564 0.96774 0.90991 0.92325 1.87802 1.17909 1.55378 1.67761 1.22294 0.82653 0.99109 0.97274 1.23045 0.99216 0.97664 0.99736 1.20065 0.92072 0.91834 0.97216 1.20829 0.98333 0.97844 0.93235 1.20960 0.97039 1.01825 0.95421 1.20795 0.93052 1.04007 0.98863 1.20899 0.97213 1.02039 0.94862 1.20994 0.97807 1.00394 0.94689 0.92288 0.76156 0.91557 0.90125 0.90647 0.90665 0.89674 0.93111 0.93396 0.90514 0.91150 0.90858 0.87137 0.87605 0.87719 0.87573 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.14 12.78 55.43 0.71 -22.43 16 2 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.51 -12.84 7.46 -34.44 -0.26 -13.09 16 8 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 9 C 0.05 1.14 2.44 -94.08 -0.23 0.91 16 10 H 0.09 2.29 7.00 -51.93 -0.36 1.93 16 11 C 0.53 11.80 6.95 -10.99 -0.08 11.72 16 12 O -0.57 -13.97 15.09 5.56 0.08 -13.89 16 13 N -0.73 -13.48 4.85 -54.30 -0.26 -13.74 16 14 C 0.15 2.37 2.10 -68.44 -0.14 2.23 16 15 H 0.08 1.52 6.78 -51.93 -0.35 1.16 16 16 C -0.13 -1.57 5.15 -27.42 -0.14 -1.72 16 17 C -0.15 -1.63 5.52 -29.39 -0.16 -1.79 16 18 C 0.06 0.60 6.11 33.84 0.21 0.81 16 19 O -0.37 -4.88 10.35 -32.82 -0.34 -5.22 16 20 C 0.06 0.77 6.09 37.87 0.23 1.00 16 21 C -0.16 -2.30 5.77 -25.17 -0.15 -2.44 16 22 C -0.01 -0.26 4.30 -104.62 -0.45 -0.71 16 23 C -0.08 -1.93 8.31 -39.58 -0.33 -2.26 16 24 C -0.13 -2.71 10.05 -39.58 -0.40 -3.10 16 25 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 26 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 27 C -0.12 -2.67 9.67 -39.59 -0.38 -3.06 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.40 7.13 8.38 -40.82 -0.34 6.79 16 30 H 0.07 0.72 7.07 -51.93 -0.37 0.35 16 31 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 36 H 0.05 0.48 6.54 -51.93 -0.34 0.14 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.11 2.57 7.89 -52.49 -0.41 2.15 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.11 2.38 7.95 -52.49 -0.42 1.96 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -29.33 354.80 -9.36 -38.69 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.71 Total: 12.22 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.17 Total: -15.91 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.26 Total: -19.11 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.33 -9.36 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433456879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.238 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds