Wall clock time and date at job start Tue Mar 31 2020 08:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00432 * 2 1 4 4 H 1.48496 * 109.47454 * 264.82078 * 3 2 1 5 5 H 1.48504 * 109.46608 * 24.82289 * 3 2 1 6 6 H 1.48497 * 109.47220 * 144.81526 * 3 2 1 7 7 C 1.37883 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99875 * 353.51837 * 7 2 1 9 9 C 1.50701 * 119.99935 * 173.51520 * 7 2 1 10 10 H 1.08998 * 109.47349 * 33.98393 * 9 7 2 11 11 C 1.50700 * 109.47236 * 153.99255 * 9 7 2 12 12 O 1.21276 * 120.00187 * 119.99927 * 11 9 7 13 13 N 1.34780 * 119.99508 * 299.99854 * 11 9 7 14 14 C 1.46495 * 120.00065 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.53620 * 324.99816 * 14 13 11 16 16 C 1.54208 * 109.54037 * 204.83568 * 14 13 11 17 17 C 1.46283 * 111.98875 * 162.59981 * 16 14 13 18 18 C 1.54123 * 112.20061 * 61.41337 * 17 16 14 19 19 O 1.40315 * 108.70715 * 280.43957 * 18 17 16 20 20 C 1.43985 * 116.58070 * 95.04148 * 19 18 17 21 21 C 1.50626 * 109.54077 * 85.16136 * 14 13 11 22 22 C 1.50711 * 109.46957 * 273.98873 * 9 7 2 23 23 C 1.38227 * 119.99757 * 305.81354 * 22 9 7 24 24 C 1.38239 * 119.99816 * 179.81385 * 23 22 9 25 25 C 1.38234 * 120.00005 * 0.39457 * 24 23 22 26 26 C 1.38234 * 119.99763 * 359.85691 * 25 24 23 27 27 C 1.38233 * 119.99636 * 126.08679 * 22 9 7 28 28 H 0.97000 * 119.99945 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00171 * 359.97438 * 13 11 9 30 30 H 1.08997 * 108.97443 * 283.24971 * 16 14 13 31 31 H 1.09004 * 108.97764 * 42.03982 * 16 14 13 32 32 H 1.09000 * 108.93627 * 182.11387 * 17 16 14 33 33 H 1.08994 * 108.94111 * 300.80668 * 17 16 14 34 34 H 1.09001 * 109.59629 * 40.20617 * 18 17 16 35 35 H 1.09001 * 109.60073 * 160.51217 * 18 17 16 36 36 H 1.08996 * 108.69838 * 78.90988 * 20 19 18 37 37 H 1.09003 * 108.69865 * 197.00992 * 20 19 18 38 38 H 1.09001 * 108.88064 * 330.97609 * 21 14 13 39 39 H 1.08994 * 108.87936 * 89.43685 * 21 14 13 40 40 H 1.08002 * 120.00771 * 359.97438 * 23 22 9 41 41 H 1.08000 * 120.00189 * 180.23052 * 24 23 22 42 42 H 1.08003 * 120.00607 * 179.83769 * 25 24 23 43 43 H 1.08004 * 119.99902 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00669 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3962 2.6817 0.5878 6 1 3.4876 1.4741 0.8067 7 6 2.0044 -1.1941 -0.0005 8 1 1.4696 -2.1265 0.1046 9 6 3.5042 -1.1983 -0.1479 10 1 3.9197 -0.3164 0.3395 11 6 4.0686 -2.4397 0.4935 12 8 4.7016 -3.2318 -0.1718 13 7 3.8698 -2.6695 1.8066 14 6 4.4189 -3.8760 2.4304 15 1 4.3844 -4.7018 1.7197 16 6 3.5879 -4.2350 3.6788 17 6 3.8108 -5.6160 4.1066 18 6 5.2791 -5.8750 4.4968 19 8 6.0299 -6.0605 3.3260 20 6 6.7032 -4.9006 2.8019 21 6 5.8459 -3.6253 2.8424 22 6 3.8652 -1.1804 -1.6111 23 6 3.3467 -2.1379 -2.4626 24 6 3.6748 -2.1192 -3.8053 25 6 4.5278 -1.1479 -4.2950 26 6 5.0504 -0.1935 -3.4424 27 6 4.7193 -0.2098 -2.1003 28 1 -0.4850 0.8400 0.0004 29 1 3.3639 -2.0358 2.3388 30 1 3.8620 -3.5633 4.4922 31 1 2.5303 -4.1021 3.4509 32 1 3.1739 -5.8274 4.9656 33 1 3.5391 -6.2870 3.2917 34 1 5.6673 -5.0188 5.0483 35 1 5.3401 -6.7684 5.1184 36 1 7.6101 -4.7312 3.3821 37 1 6.9831 -5.0970 1.7669 38 1 6.2818 -2.8850 2.1716 39 1 5.8553 -3.2279 3.8573 40 1 2.6832 -2.8991 -2.0794 41 1 3.2667 -2.8650 -4.4714 42 1 4.7863 -1.1347 -5.3435 43 1 5.7172 0.5652 -3.8248 44 1 5.1276 0.5358 -1.4343 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433456882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:10 Heat of formation + Delta-G solvation = -68.307618 kcal Electronic energy + Delta-G solvation = -25391.052135 eV Core-core repulsion = 21886.707994 eV Total energy + Delta-G solvation = -3504.344142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93116 -38.94170 -37.78394 -35.38349 -33.64863 -33.07489 -31.58465 -31.14956 -30.10103 -27.86082 -26.53765 -25.23124 -23.49570 -21.83253 -21.31781 -20.98325 -20.18824 -19.18130 -17.13968 -16.85306 -16.59819 -16.20170 -16.00628 -15.38465 -14.75892 -14.55821 -14.35714 -13.99891 -13.86256 -13.60084 -13.28914 -13.02138 -12.93744 -12.66257 -12.55017 -12.25368 -12.02765 -11.84638 -11.54703 -11.27594 -11.13791 -10.99776 -10.75443 -10.59877 -10.46965 -10.42890 -10.26242 -9.93098 -9.54540 -9.51872 -8.90716 -8.73067 -8.44796 -8.09797 -7.79129 -6.30651 -4.34750 2.18171 2.24887 3.15803 3.22097 3.26921 3.56688 3.71853 3.96523 4.22618 4.64048 4.66578 4.79232 4.91994 5.00744 5.05705 5.17512 5.33284 5.43106 5.53622 5.56321 5.58578 5.63339 5.74473 5.79126 5.89230 5.94735 5.96263 6.04620 6.08633 6.18827 6.27676 6.31259 6.34140 6.45096 6.49479 6.76978 6.88082 7.13643 7.19615 7.28510 7.29958 7.35876 7.62696 7.83144 8.18944 8.29246 8.69266 9.10973 9.27807 10.80385 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014595 B = 0.004894 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.984255 B = 5719.465046 C = 6819.336904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.087 3.913 3 Si 0.864 3.136 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.021 3.979 10 H 0.067 0.933 11 C 0.538 3.462 12 O -0.558 6.558 13 N -0.726 5.726 14 C 0.150 3.850 15 H 0.090 0.910 16 C -0.127 4.127 17 C -0.147 4.147 18 C 0.066 3.934 19 O -0.385 6.385 20 C 0.069 3.931 21 C -0.163 4.163 22 C -0.028 4.028 23 C -0.069 4.069 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.137 4.137 28 H 0.268 0.732 29 H 0.404 0.596 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.596 -5.017 6.563 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.000 4.000 10 H 0.085 0.915 11 C 0.326 3.674 12 O -0.436 6.436 13 N -0.377 5.377 14 C 0.045 3.955 15 H 0.108 0.892 16 C -0.165 4.165 17 C -0.185 4.185 18 C -0.012 4.012 19 O -0.304 6.304 20 C -0.007 4.007 21 C -0.202 4.202 22 C -0.029 4.029 23 C -0.088 4.088 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.148 4.148 27 C -0.155 4.155 28 H 0.078 0.922 29 H 0.239 0.761 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.863 -5.625 5.996 12.840 hybrid contribution -0.048 1.711 0.364 1.750 sum 9.815 -3.914 6.360 12.333 Atomic orbital electron populations 1.69869 1.06210 1.27470 1.48214 1.24943 0.94663 0.98761 0.93416 0.86998 0.80165 0.83964 0.79770 1.18993 1.21161 1.18893 1.20525 0.86812 0.95347 1.52325 0.90002 1.18521 0.98764 0.93299 0.89447 0.91516 1.21021 0.77332 0.88026 0.80979 1.90598 1.41554 1.48699 1.62780 1.46003 1.57089 1.24325 1.10326 1.20477 0.91114 0.89326 0.94595 0.89218 1.20866 1.01404 0.97214 0.97024 1.21064 0.97634 0.97514 1.02312 1.22350 0.90473 1.01024 0.87324 1.87464 1.66519 1.33878 1.42525 1.22862 0.93244 0.85006 0.99631 1.22382 0.97034 0.98605 1.02176 1.20076 0.92565 0.93373 0.96902 1.20840 0.97706 0.97861 0.92353 1.21037 0.99109 0.98875 0.95754 1.20857 0.99844 0.96675 0.98722 1.20869 1.00993 0.99088 0.93818 1.20956 0.99374 0.99655 0.95495 0.92152 0.76089 0.91913 0.90593 0.91035 0.90806 0.93124 0.90051 0.93354 0.89126 0.90092 0.91975 0.86475 0.87133 0.87354 0.87332 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 13.96 55.43 0.77 -24.13 16 2 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.86 19.88 26.74 -169.99 -4.54 15.34 16 4 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.64 6.31 56.52 0.36 -5.29 16 7 C -0.51 -13.04 8.03 -34.44 -0.28 -13.31 16 8 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 9 C 0.02 0.48 1.89 -94.07 -0.18 0.30 16 10 H 0.07 1.47 5.15 -51.93 -0.27 1.21 16 11 C 0.54 11.39 6.84 -10.98 -0.08 11.32 16 12 O -0.56 -12.96 15.07 5.56 0.08 -12.88 16 13 N -0.73 -12.76 4.90 -54.35 -0.27 -13.03 16 14 C 0.15 2.26 2.15 -68.49 -0.15 2.11 16 15 H 0.09 1.59 7.27 -51.92 -0.38 1.21 16 16 C -0.13 -1.55 4.83 -29.29 -0.14 -1.69 16 17 C -0.15 -1.58 5.47 -29.34 -0.16 -1.74 16 18 C 0.07 0.68 6.38 37.74 0.24 0.92 16 19 O -0.39 -5.03 10.17 -33.67 -0.34 -5.37 16 20 C 0.07 0.86 6.66 37.53 0.25 1.11 16 21 C -0.16 -2.14 5.01 -27.54 -0.14 -2.28 16 22 C -0.03 -0.63 3.95 -104.62 -0.41 -1.05 16 23 C -0.07 -1.54 8.29 -39.58 -0.33 -1.87 16 24 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 25 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 27 C -0.14 -2.82 9.26 -39.58 -0.37 -3.18 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.40 6.73 8.50 -40.82 -0.35 6.38 16 30 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 34 H 0.05 0.47 6.98 -51.93 -0.36 0.11 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.19 7.82 -51.93 -0.41 0.78 16 39 H 0.06 0.70 6.84 -51.93 -0.36 0.35 16 40 H 0.12 2.71 7.90 -52.49 -0.41 2.29 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 44 H 0.11 2.02 7.96 -52.49 -0.42 1.61 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -29.96 351.11 -8.78 -38.74 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.75 Total: 11.86 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.02 Total: -15.82 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.51 Total: -37.15 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.26 Total: -18.25 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.54 Total: 15.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.96 -8.78 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433456882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.570 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds