Wall clock time and date at job start Tue Mar 31 2020 08:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99582 * 2 1 4 4 H 1.48501 * 109.46842 * 264.81113 * 3 2 1 5 5 H 1.48492 * 109.47345 * 24.81600 * 3 2 1 6 6 H 1.48508 * 109.46822 * 144.81626 * 3 2 1 7 7 C 1.37875 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00147 * 353.51072 * 7 2 1 9 9 C 1.50701 * 119.99842 * 173.51809 * 7 2 1 10 10 H 1.08997 * 109.47356 * 33.95221 * 9 7 2 11 11 C 1.50696 * 109.47445 * 153.95735 * 9 7 2 12 12 O 1.21285 * 119.99751 * 119.99468 * 11 9 7 13 13 N 1.34777 * 120.00205 * 300.00081 * 11 9 7 14 14 C 1.46497 * 120.00244 * 179.97438 * 13 11 9 15 15 H 1.09000 * 108.94225 * 36.23950 * 14 13 11 16 16 C 1.46285 * 108.96153 * 154.99960 * 14 13 11 17 17 C 1.54207 * 112.06697 * 181.47921 * 16 14 13 18 18 C 1.50409 * 108.77148 * 282.19883 * 17 16 14 19 19 O 1.44186 * 112.77723 * 92.57872 * 18 17 16 20 20 C 1.44195 * 116.92692 * 318.47025 * 19 18 17 21 21 C 1.50407 * 112.77438 * 318.47998 * 20 19 18 22 22 C 1.50706 * 109.46748 * 273.95972 * 9 7 2 23 23 C 1.38237 * 119.99665 * 305.80780 * 22 9 7 24 24 C 1.38238 * 119.99563 * 179.77004 * 23 22 9 25 25 C 1.38239 * 120.00044 * 0.48166 * 24 23 22 26 26 C 1.38236 * 119.99952 * 359.79443 * 25 24 23 27 27 C 1.38230 * 119.99961 * 359.95375 * 26 25 24 28 28 H 0.96999 * 120.00152 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99625 * 359.97438 * 13 11 9 30 30 H 1.09002 * 108.96022 * 302.14282 * 16 14 13 31 31 H 1.08994 * 108.96310 * 60.81103 * 16 14 13 32 32 H 1.08999 * 109.58668 * 41.99257 * 17 16 14 33 33 H 1.09004 * 109.58511 * 162.41313 * 17 16 14 34 34 H 1.09001 * 108.82182 * 331.72990 * 18 17 16 35 35 H 1.08998 * 108.82275 * 213.42481 * 18 17 16 36 36 H 1.09003 * 108.81967 * 197.62795 * 20 19 18 37 37 H 1.09002 * 108.81890 * 79.32967 * 20 19 18 38 38 H 1.08999 * 109.59058 * 332.79425 * 21 20 19 39 39 H 1.09001 * 109.58659 * 212.35928 * 21 20 19 40 40 H 1.08000 * 119.99966 * 0.02562 * 23 22 9 41 41 H 1.07999 * 119.99675 * 180.25265 * 24 23 22 42 42 H 1.07998 * 119.99792 * 179.76664 * 25 24 23 43 43 H 1.08000 * 119.99973 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.00307 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6061 1.9832 -1.3944 5 1 1.3960 2.6818 0.5876 6 1 3.4876 1.4744 0.8068 7 6 2.0045 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1067 9 6 3.5043 -1.1983 -0.1468 10 1 3.9197 -0.3156 0.3394 11 6 4.0688 -2.4386 0.4965 12 8 4.7019 -3.2317 -0.1678 13 7 3.8701 -2.6667 1.8098 14 6 4.4184 -3.8728 2.4351 15 1 5.3859 -4.0959 1.9853 16 6 4.6047 -3.6244 3.8646 17 6 5.2156 -4.8408 4.5892 18 6 4.1366 -5.8655 4.8086 19 8 4.0634 -6.8357 3.7444 20 6 4.2030 -6.3395 2.3977 21 6 3.4598 -5.0516 2.1718 22 6 3.8653 -1.1823 -1.6099 23 6 3.3469 -2.1412 -2.4601 24 6 3.6743 -2.1237 -3.8031 25 6 4.5279 -1.1534 -4.2939 26 6 5.0507 -0.1980 -3.4425 27 6 4.7192 -0.2124 -2.1006 28 1 -0.4850 0.8400 -0.0004 29 1 3.3640 -2.0322 2.3411 30 1 5.2662 -2.7674 3.9918 31 1 3.6384 -3.3936 4.3129 32 1 6.0087 -5.2704 3.9771 33 1 5.6225 -4.5270 5.5505 34 1 3.1768 -5.3546 4.8853 35 1 4.3315 -6.3861 5.7462 36 1 3.8235 -7.0908 1.7051 37 1 5.2607 -6.1761 2.1911 38 1 2.6129 -4.9935 2.8556 39 1 3.1043 -5.0106 1.1422 40 1 2.6829 -2.9014 -2.0759 41 1 3.2661 -2.8704 -4.4681 42 1 4.7866 -1.1421 -5.3423 43 1 5.7179 0.5598 -3.8259 44 1 5.1280 0.5338 -1.4354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433456885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:14 Heat of formation + Delta-G solvation = -66.372867 kcal Electronic energy + Delta-G solvation = -25384.052977 eV Core-core repulsion = 21879.792732 eV Total energy + Delta-G solvation = -3504.260245 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03043 -38.91493 -37.76386 -35.40576 -33.66792 -32.79488 -31.61086 -31.19265 -30.11809 -27.96619 -26.84387 -25.07442 -23.50386 -21.85480 -21.29876 -20.79801 -20.32328 -19.22614 -17.12966 -16.93191 -16.69260 -16.16969 -16.02779 -15.09243 -14.98704 -14.54453 -14.39427 -13.92140 -13.82981 -13.42132 -13.32149 -13.04997 -12.83723 -12.67495 -12.56741 -12.42341 -12.08826 -11.89503 -11.49847 -11.32110 -11.17898 -11.00969 -10.92917 -10.67368 -10.51423 -10.45058 -10.28316 -9.94262 -9.56632 -9.49256 -8.93121 -8.74608 -8.47558 -8.11573 -7.80772 -6.32028 -4.36386 2.16569 2.23214 3.14801 3.21182 3.25992 3.52482 3.72438 3.85820 4.21376 4.62744 4.63894 4.76153 4.88373 4.95003 4.99754 5.22324 5.35661 5.48487 5.55042 5.56163 5.60805 5.62008 5.67593 5.73612 5.81419 5.87557 5.94547 5.99485 6.07242 6.10270 6.27487 6.29596 6.32413 6.42012 6.48074 6.75167 6.86355 7.08276 7.18028 7.23637 7.26589 7.28109 7.60850 7.81396 8.16474 8.25409 8.67317 9.07177 9.26350 10.78926 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.004752 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.203990 B = 5890.316278 C = 6857.726872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.087 3.913 3 Si 0.864 3.136 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.021 3.979 10 H 0.067 0.933 11 C 0.538 3.462 12 O -0.559 6.559 13 N -0.727 5.727 14 C 0.147 3.853 15 H 0.080 0.920 16 C -0.133 4.133 17 C -0.148 4.148 18 C 0.062 3.938 19 O -0.398 6.398 20 C 0.068 3.932 21 C -0.162 4.162 22 C -0.028 4.028 23 C -0.070 4.070 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.269 0.731 29 H 0.404 0.596 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 -5.169 5.901 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.000 4.000 10 H 0.085 0.915 11 C 0.327 3.673 12 O -0.437 6.437 13 N -0.379 5.379 14 C 0.042 3.958 15 H 0.098 0.902 16 C -0.171 4.171 17 C -0.186 4.186 18 C -0.015 4.015 19 O -0.318 6.318 20 C -0.008 4.008 21 C -0.201 4.201 22 C -0.029 4.029 23 C -0.088 4.088 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.155 4.155 28 H 0.079 0.921 29 H 0.239 0.761 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.046 -5.785 5.456 12.044 hybrid contribution -0.001 1.697 0.102 1.700 sum 9.045 -4.088 5.558 11.376 Atomic orbital electron populations 1.69870 1.06207 1.27495 1.48147 1.24942 0.94664 0.98772 0.93400 0.87000 0.80167 0.83965 0.79779 1.18992 1.21147 1.18883 1.20512 0.86774 0.95349 1.52397 0.90011 1.18519 0.98756 0.93327 0.89441 0.91500 1.21027 0.77215 0.87980 0.81078 1.90594 1.41492 1.48949 1.62692 1.46085 1.57270 1.24041 1.10493 1.19877 0.97470 0.85689 0.92746 0.90222 1.20945 1.02151 0.98761 0.95215 1.21844 0.99199 0.96012 1.01564 1.22297 0.97952 0.91134 0.90070 1.88232 1.94345 1.34873 1.14375 1.22226 0.99568 0.96208 0.82841 1.22330 0.99271 0.94342 1.04153 1.20078 0.92573 0.93367 0.96899 1.20832 0.97719 0.97871 0.92356 1.21036 0.99117 0.98892 0.95745 1.20860 0.99829 0.96674 0.98735 1.20870 1.00973 0.99078 0.93825 1.20961 0.99350 0.99664 0.95499 0.92135 0.76060 0.90987 0.91036 0.90543 0.90184 0.92969 0.89818 0.89462 0.93069 0.90716 0.89532 0.86504 0.87137 0.87347 0.87316 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.78 13.96 55.43 0.77 -24.00 16 2 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.86 19.79 26.75 -169.99 -4.55 15.24 16 4 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.61 6.31 56.52 0.36 -5.26 16 7 C -0.51 -12.91 8.03 -34.44 -0.28 -13.19 16 8 H 0.08 2.26 8.05 -52.48 -0.42 1.84 16 9 C 0.02 0.47 1.89 -94.07 -0.18 0.29 16 10 H 0.07 1.47 5.14 -51.93 -0.27 1.20 16 11 C 0.54 11.21 6.80 -10.99 -0.07 11.14 16 12 O -0.56 -12.72 15.08 5.55 0.08 -12.64 16 13 N -0.73 -12.48 4.93 -56.33 -0.28 -12.76 16 14 C 0.15 2.11 1.99 -70.50 -0.14 1.97 16 15 H 0.08 1.25 7.00 -51.93 -0.36 0.89 16 16 C -0.13 -1.48 4.68 -29.29 -0.14 -1.62 16 17 C -0.15 -1.42 5.61 -27.39 -0.15 -1.57 16 18 C 0.06 0.64 6.26 35.86 0.22 0.87 16 19 O -0.40 -5.24 10.88 -35.23 -0.38 -5.62 16 20 C 0.07 0.89 6.26 35.86 0.22 1.11 16 21 C -0.16 -2.34 5.18 -27.40 -0.14 -2.48 16 22 C -0.03 -0.63 3.95 -104.62 -0.41 -1.04 16 23 C -0.07 -1.53 8.30 -39.58 -0.33 -1.86 16 24 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 25 C -0.14 -2.54 10.05 -39.58 -0.40 -2.93 16 26 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 27 C -0.14 -2.80 9.26 -39.59 -0.37 -3.17 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.40 6.60 8.44 -40.82 -0.34 6.25 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 32 H 0.08 0.78 7.15 -51.93 -0.37 0.41 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.55 6.68 -51.93 -0.35 0.20 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.65 6.68 -51.93 -0.35 0.31 16 38 H 0.07 1.06 7.15 -51.93 -0.37 0.69 16 39 H 0.09 1.47 7.94 -51.93 -0.41 1.06 16 40 H 0.12 2.65 7.90 -52.49 -0.41 2.24 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 2.02 7.96 -52.49 -0.42 1.60 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -29.75 348.63 -8.76 -38.51 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.61 Total: 11.95 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -3.05 Total: -15.93 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.50 Total: -36.77 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.30 Total: -18.26 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.55 Total: 15.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.75 -8.76 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433456885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.868 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds