Wall clock time and date at job start Tue Mar 31 2020 08:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47061 * 239.99839 * 3 2 1 5 5 H 1.48500 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47267 * 119.99718 * 3 2 1 7 7 C 1.37878 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99371 * 181.98598 * 7 2 1 9 9 C 1.50696 * 120.00390 * 1.99415 * 7 2 1 10 10 H 1.09005 * 109.47171 * 175.34563 * 9 7 2 11 11 C 1.50697 * 109.47552 * 55.34295 * 9 7 2 12 12 O 1.21283 * 120.00195 * 240.00481 * 11 9 7 13 13 N 1.34782 * 119.99797 * 59.99892 * 11 9 7 14 14 C 1.46500 * 119.99768 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.47244 * 324.99848 * 14 13 11 16 16 C 1.52998 * 109.47127 * 85.00567 * 14 13 11 17 17 O 1.42900 * 109.47544 * 64.99392 * 16 14 13 18 18 C 1.53003 * 109.46902 * 204.99988 * 14 13 11 19 19 C 1.53004 * 109.46777 * 65.00205 * 18 14 13 20 20 C 1.53003 * 117.49549 * 243.74383 * 19 18 14 21 21 C 1.53001 * 117.49719 * 175.08721 * 19 18 14 22 22 C 1.50700 * 109.46876 * 295.34271 * 9 7 2 23 23 C 1.38239 * 120.00103 * 346.94101 * 22 9 7 24 24 C 1.38234 * 119.99847 * 179.78929 * 23 22 9 25 25 C 1.38234 * 120.00176 * 0.43297 * 24 23 22 26 26 C 1.38238 * 120.00101 * 359.81926 * 25 24 23 27 27 C 1.38235 * 120.00022 * 167.20966 * 22 9 7 28 28 H 0.96995 * 119.99967 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99932 * 0.02562 * 13 11 9 30 30 H 1.08997 * 109.47283 * 184.99926 * 16 14 13 31 31 H 1.09004 * 109.46809 * 304.99752 * 16 14 13 32 32 H 0.96697 * 113.99919 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.47010 * 185.00003 * 18 14 13 34 34 H 1.09001 * 109.47408 * 305.00456 * 18 14 13 35 35 H 1.08992 * 115.55149 * 29.41428 * 19 18 14 36 36 H 1.08996 * 117.50272 * 0.02562 * 20 19 18 37 37 H 1.08999 * 117.49736 * 145.02548 * 20 19 18 38 38 H 1.08994 * 117.50285 * 214.98007 * 21 19 18 39 39 H 1.09004 * 117.50187 * 359.97438 * 21 19 18 40 40 H 1.08000 * 119.99542 * 359.97438 * 23 22 9 41 41 H 1.08001 * 119.99955 * 180.27401 * 24 23 22 42 42 H 1.08003 * 120.00394 * 179.83283 * 25 24 23 43 43 H 1.07994 * 120.00472 * 179.97438 * 26 25 24 44 44 H 1.08004 * 119.99818 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1943 0.0329 9 6 1.2517 -2.4988 -0.0443 10 1 1.9595 -3.3243 -0.1204 11 6 0.3365 -2.5099 -1.2414 12 8 -0.8607 -2.6297 -1.0885 13 7 0.8483 -2.3865 -2.4822 14 6 -0.0415 -2.3968 -3.6459 15 1 -0.8726 -3.0775 -3.4619 16 6 -0.5816 -0.9858 -3.8873 17 8 0.4961 -0.1175 -4.2430 18 6 0.7362 -2.8628 -4.8784 19 6 1.1699 -4.3177 -4.6876 20 6 2.6715 -4.6049 -4.6265 21 6 1.8645 -5.0077 -5.8633 22 6 0.4356 -2.6512 1.2134 23 6 0.6641 -1.8162 2.2911 24 6 -0.0875 -1.9532 3.4431 25 6 -1.0615 -2.9311 3.5208 26 6 -1.2865 -3.7696 2.4450 27 6 -0.5377 -3.6297 1.2914 28 1 -0.4850 0.8400 -0.0004 29 1 1.8058 -2.2910 -2.6045 30 1 -1.3113 -1.0096 -4.6967 31 1 -1.0589 -0.6191 -2.9785 32 1 0.2262 0.7957 -4.4114 33 1 0.0999 -2.7860 -5.7600 34 1 1.6176 -2.2354 -5.0107 35 1 0.5154 -4.9252 -4.0628 36 1 3.3503 -3.7576 -4.7218 37 1 3.0048 -5.4019 -3.9618 38 1 1.6673 -6.0693 -6.0118 39 1 2.0122 -4.4254 -6.7729 40 1 1.4278 -1.0548 2.2319 41 1 0.0879 -1.2980 4.2835 42 1 -1.6469 -3.0400 4.4218 43 1 -2.0471 -4.5338 2.5057 44 1 -0.7135 -4.2847 0.4508 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433958138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:17 Heat of formation + Delta-G solvation = -43.577754 kcal Electronic energy + Delta-G solvation = -25843.077342 eV Core-core repulsion = 22339.805567 eV Total energy + Delta-G solvation = -3503.271774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.13391 -38.07103 -37.00422 -36.18992 -33.65636 -33.47379 -30.78117 -29.93320 -29.62016 -27.08797 -26.23499 -23.86669 -22.28425 -21.49878 -21.17140 -20.43590 -19.93153 -19.07136 -17.05240 -16.61878 -16.09646 -15.53970 -15.13523 -14.77840 -14.71166 -14.44675 -13.97340 -13.85111 -13.57844 -13.00455 -12.90995 -12.70989 -12.35068 -12.18435 -12.02669 -11.80156 -11.60145 -11.42209 -11.23302 -10.92931 -10.90619 -10.81500 -10.74516 -10.36504 -10.02926 -10.00191 -9.76762 -9.62338 -9.46241 -9.30970 -8.62691 -8.21394 -7.85068 -7.63809 -7.34058 -6.06681 -4.21781 2.59769 2.66010 3.26195 3.31714 3.34300 3.92240 4.19885 4.33609 4.46004 4.74348 4.84283 5.02860 5.06450 5.11118 5.21685 5.42048 5.60934 5.69952 5.73868 5.83136 5.89242 5.92816 6.01509 6.03859 6.08389 6.12195 6.19732 6.27548 6.45237 6.47563 6.55267 6.70403 6.73724 6.87839 6.98472 7.18740 7.26759 7.58989 7.67205 7.71263 7.75187 7.86607 8.05777 8.22000 8.33725 8.71461 8.93051 9.44447 9.80535 10.93504 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.005997 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.290415 B = 4668.067083 C = 5867.336585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.079 3.921 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.057 3.943 10 H 0.054 0.946 11 C 0.553 3.447 12 O -0.555 6.555 13 N -0.718 5.718 14 C 0.160 3.840 15 H 0.087 0.913 16 C 0.065 3.935 17 O -0.564 6.564 18 C -0.090 4.090 19 C -0.143 4.143 20 C -0.177 4.177 21 C -0.188 4.188 22 C -0.012 4.012 23 C -0.065 4.065 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.100 4.100 28 H 0.262 0.738 29 H 0.397 0.603 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.369 0.631 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -5.102 -7.189 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.035 3.965 10 H 0.072 0.928 11 C 0.342 3.658 12 O -0.432 6.432 13 N -0.370 5.370 14 C 0.054 3.946 15 H 0.105 0.895 16 C -0.014 4.014 17 O -0.368 6.368 18 C -0.128 4.128 19 C -0.161 4.161 20 C -0.214 4.214 21 C -0.225 4.225 22 C -0.013 4.013 23 C -0.083 4.083 24 C -0.166 4.166 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.118 4.118 28 H 0.072 0.928 29 H 0.231 0.769 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.214 0.786 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.836 -5.628 -6.993 9.015 hybrid contribution 0.246 1.838 -0.177 1.863 sum 1.083 -3.790 -7.170 8.182 Atomic orbital electron populations 1.70075 1.05352 1.26697 1.45309 1.24982 0.94761 0.98954 0.94140 0.86738 0.79733 0.83379 0.78739 1.20005 1.21516 1.20235 1.20618 0.92777 0.88800 1.55359 0.91788 1.17864 0.92749 0.98030 0.87818 0.92790 1.20950 0.89018 0.72000 0.83824 1.90520 1.16692 1.50298 1.85707 1.45696 1.09928 1.76644 1.04689 1.20718 0.93909 0.93878 0.86092 0.89512 1.22678 0.88534 0.91676 0.98546 1.86462 1.35590 1.22722 1.92003 1.21357 1.01050 0.93143 0.97202 1.22309 0.95399 0.97171 1.01255 1.23006 0.94348 1.03462 1.00537 1.22953 1.05917 1.00573 0.93064 1.19839 0.94467 0.92068 0.94915 1.21145 0.98471 0.97277 0.91423 1.20982 0.98219 0.99053 0.98385 1.20756 0.99666 0.97890 0.98095 1.20811 1.00616 1.00370 0.94513 1.20965 0.96003 0.98869 0.95992 0.92772 0.76924 0.94814 0.92047 0.78592 0.91242 0.90555 0.87979 0.88747 0.89083 0.89325 0.89177 0.85495 0.88138 0.88312 0.88211 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.65 10.90 55.43 0.60 -22.05 16 2 C 0.08 2.00 4.01 -17.82 -0.07 1.93 16 3 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.20 7.11 -34.44 -0.24 -13.44 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.33 2.78 -94.08 -0.26 1.07 16 10 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.55 12.80 5.42 -10.98 -0.06 12.74 16 12 O -0.55 -14.37 13.62 5.55 0.08 -14.30 16 13 N -0.72 -14.07 4.65 -53.81 -0.25 -14.32 16 14 C 0.16 2.73 2.33 -67.93 -0.16 2.57 16 15 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 16 C 0.06 1.12 6.85 37.16 0.25 1.37 16 17 O -0.56 -9.50 12.83 -35.23 -0.45 -9.95 16 18 C -0.09 -1.23 4.75 -26.73 -0.13 -1.36 16 19 C -0.14 -1.82 5.47 -90.62 -0.50 -2.32 16 20 C -0.18 -2.09 10.18 -26.69 -0.27 -2.36 16 21 C -0.19 -2.03 10.25 -26.69 -0.27 -2.31 16 22 C -0.01 -0.29 4.51 -104.62 -0.47 -0.76 16 23 C -0.07 -1.54 8.21 -39.58 -0.32 -1.86 16 24 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 25 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 26 C -0.14 -3.00 10.05 -39.58 -0.40 -3.40 16 27 C -0.10 -2.28 8.21 -39.58 -0.33 -2.61 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 7.60 8.49 -40.82 -0.35 7.25 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.37 4.85 9.12 45.56 0.42 5.27 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.11 7.46 -51.93 -0.39 0.72 16 35 H 0.10 1.40 8.07 -51.93 -0.42 0.98 16 36 H 0.09 1.11 8.03 -51.93 -0.42 0.70 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.13 3.10 6.04 -52.49 -0.32 2.79 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.11 2.40 7.01 -52.48 -0.37 2.03 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -29.50 362.15 -9.62 -39.11 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -6.01 Total: 18.56 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -4.02 Total: -17.59 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.35 Total: -36.37 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.38 Total: -24.25 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.50 -9.62 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433958138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.466 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds