Wall clock time and date at job start Tue Mar 31 2020 08:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47051 * 300.00029 * 3 2 1 6 6 H 1.48500 * 109.46926 * 59.99573 * 3 2 1 7 7 C 1.37877 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99648 * 181.97925 * 7 2 1 9 9 C 1.50697 * 120.00267 * 1.98432 * 7 2 1 10 10 H 1.09005 * 109.46955 * 175.34831 * 9 7 2 11 11 C 1.50699 * 109.47010 * 55.34787 * 9 7 2 12 12 O 1.21280 * 119.99841 * 239.99935 * 11 9 7 13 13 N 1.34777 * 120.00252 * 60.00148 * 11 9 7 14 14 C 1.46497 * 120.00026 * 179.97438 * 13 11 9 15 15 H 1.08998 * 109.47400 * 35.00460 * 14 13 11 16 16 C 1.52998 * 109.47522 * 275.00277 * 14 13 11 17 17 O 1.42904 * 109.46798 * 294.99788 * 16 14 13 18 18 C 1.53001 * 109.46689 * 155.00164 * 14 13 11 19 19 C 1.53001 * 109.47249 * 295.00125 * 18 14 13 20 20 C 1.53003 * 117.49999 * 243.62465 * 19 18 14 21 21 C 1.52999 * 117.49961 * 175.00215 * 19 18 14 22 22 C 1.50700 * 109.47123 * 295.34828 * 9 7 2 23 23 C 1.38238 * 119.99559 * 346.93455 * 22 9 7 24 24 C 1.38237 * 119.99574 * 179.78874 * 23 22 9 25 25 C 1.38242 * 119.99870 * 0.44029 * 24 23 22 26 26 C 1.38233 * 120.00154 * 359.81618 * 25 24 23 27 27 C 1.38234 * 119.99875 * 359.97227 * 26 25 24 28 28 H 0.96992 * 120.00037 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99429 * 359.72502 * 13 11 9 30 30 H 1.08993 * 109.47349 * 54.99943 * 16 14 13 31 31 H 1.08993 * 109.47112 * 175.00424 * 16 14 13 32 32 H 0.96700 * 114.00024 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.47499 * 55.00040 * 18 14 13 34 34 H 1.09007 * 109.47113 * 175.00341 * 18 14 13 35 35 H 1.08996 * 115.55179 * 29.32860 * 19 18 14 36 36 H 1.08999 * 117.49589 * 0.02562 * 20 19 18 37 37 H 1.08996 * 117.50224 * 145.01754 * 20 19 18 38 38 H 1.08999 * 117.49919 * 214.98041 * 21 19 18 39 39 H 1.08999 * 117.50122 * 359.97438 * 21 19 18 40 40 H 1.07994 * 120.00153 * 0.02562 * 23 22 9 41 41 H 1.08001 * 120.00336 * 180.27573 * 24 23 22 42 42 H 1.08004 * 119.99568 * 179.83754 * 25 24 23 43 43 H 1.07999 * 120.00107 * 179.97438 * 26 25 24 44 44 H 1.07992 * 119.99911 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0841 -1.1943 0.0328 9 6 1.2518 -2.4988 -0.0441 10 1 1.9597 -3.3242 -0.1202 11 6 0.3365 -2.5099 -1.2412 12 8 -0.8606 -2.6299 -1.0881 13 7 0.8482 -2.3867 -2.4820 14 6 -0.0416 -2.3982 -3.6457 15 1 -0.9808 -1.9077 -3.3899 16 6 -0.3182 -3.8441 -4.0621 17 8 0.8957 -4.4518 -4.5085 18 6 0.6242 -1.6523 -4.8039 19 6 0.7875 -0.1768 -4.4337 20 6 0.0248 0.8507 -5.2725 21 6 1.5422 0.7192 -5.4178 22 6 0.4357 -2.6512 1.2137 23 6 0.6644 -1.8160 2.2913 24 6 -0.0871 -1.9529 3.4434 25 6 -1.0611 -2.9309 3.5212 26 6 -1.2861 -3.7694 2.4455 27 6 -0.5375 -3.6297 1.2918 28 1 -0.4850 0.8400 -0.0004 29 1 1.8053 -2.2869 -2.6041 30 1 -0.7103 -4.3990 -3.2099 31 1 -1.0490 -3.8559 -4.8707 32 1 0.7952 -5.3719 -4.7884 33 1 1.6037 -2.0879 -5.0014 34 1 0.0026 -1.7366 -5.6954 35 1 0.9076 0.0306 -3.3704 36 1 -0.5936 0.4754 -6.0878 37 1 -0.3571 1.7342 -4.7610 38 1 2.1586 1.5162 -5.0020 39 1 1.9228 0.2574 -6.3289 40 1 1.4275 -1.0542 2.2317 41 1 0.0884 -1.2976 4.2837 42 1 -1.6465 -3.0395 4.4223 43 1 -2.0467 -4.5337 2.5064 44 1 -0.7130 -4.2850 0.4516 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433958139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:19 Heat of formation + Delta-G solvation = -62.140436 kcal Electronic energy + Delta-G solvation = -25832.551187 eV Core-core repulsion = 22328.474475 eV Total energy + Delta-G solvation = -3504.076713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.82605 -39.55547 -38.42643 -37.54683 -35.45366 -35.12704 -32.64403 -31.39413 -31.31403 -28.83270 -27.57847 -25.77313 -23.28272 -23.08830 -22.82200 -21.83065 -21.15041 -20.86280 -18.74674 -18.20390 -17.61849 -16.98775 -16.81706 -16.67124 -16.21557 -15.85382 -15.59672 -15.31474 -15.06109 -14.78664 -14.40801 -14.13935 -13.93443 -13.86170 -13.78807 -13.22163 -13.01549 -12.90179 -12.79434 -12.50945 -12.42161 -12.30022 -12.26021 -12.02328 -11.76390 -11.41192 -11.15622 -11.12447 -10.95153 -10.66364 -10.62782 -10.06850 -9.52262 -9.36359 -9.08018 -8.05565 -6.23929 0.89338 0.94593 1.36272 1.43097 1.50419 2.35626 2.49407 2.81777 2.93969 3.21986 3.36954 3.50475 3.65258 3.97004 4.08441 4.23515 4.35070 4.36226 4.37919 4.49594 4.50883 4.55097 4.64257 4.71021 4.73764 4.80571 4.86969 4.97077 5.02241 5.07750 5.13471 5.17538 5.23770 5.32242 5.46427 5.47357 5.56168 5.72054 5.90002 5.95395 5.99970 6.09928 6.44962 6.54455 6.78270 6.95951 7.18061 7.44090 8.01873 8.93154 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.006391 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.293472 B = 4380.068336 C = 5956.305161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.048 3.952 3 Si 0.931 3.069 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.045 3.955 10 H 0.061 0.939 11 C 0.553 3.447 12 O -0.586 6.586 13 N -0.712 5.712 14 C 0.152 3.848 15 H 0.060 0.940 16 C 0.077 3.923 17 O -0.574 6.574 18 C -0.068 4.068 19 C -0.169 4.169 20 C -0.180 4.180 21 C -0.167 4.167 22 C -0.034 4.034 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.117 4.117 28 H 0.254 0.746 29 H 0.400 0.600 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.392 0.608 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -5.018 -8.174 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.157 4.157 3 Si 0.758 3.242 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.024 3.976 10 H 0.079 0.921 11 C 0.343 3.657 12 O -0.466 6.466 13 N -0.362 5.362 14 C 0.047 3.953 15 H 0.079 0.921 16 C -0.002 4.002 17 O -0.382 6.382 18 C -0.105 4.105 19 C -0.187 4.187 20 C -0.217 4.217 21 C -0.204 4.204 22 C -0.035 4.035 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.164 4.164 27 C -0.135 4.135 28 H 0.063 0.937 29 H 0.234 0.766 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.241 0.759 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.409 -4.396 -7.934 9.080 hybrid contribution 0.273 0.913 0.067 0.955 sum 0.682 -3.483 -7.867 8.631 Atomic orbital electron populations 1.70238 1.06575 1.26342 1.47100 1.25437 0.94990 1.01076 0.94186 0.85914 0.79949 0.81317 0.77055 1.18473 1.21510 1.21454 1.20861 0.92887 0.89234 1.53942 0.91517 1.17995 0.93156 0.97935 0.88495 0.92099 1.20841 0.88413 0.71818 0.84668 1.90486 1.17859 1.51881 1.86380 1.45650 1.10395 1.75489 1.04694 1.20859 0.94170 0.94127 0.86190 0.92145 1.22450 0.86823 0.93381 0.97574 1.86442 1.32900 1.31877 1.86937 1.21181 1.01942 0.90958 0.96462 1.22294 1.06471 0.93342 0.96627 1.23053 0.95070 1.00786 1.02799 1.22978 0.94065 1.02090 1.01295 1.19937 0.95403 0.93043 0.95102 1.21111 0.99317 0.97462 0.92672 1.21307 0.97850 0.99635 0.98247 1.21168 0.99062 0.96565 0.99163 1.21186 1.00467 1.00953 0.93783 1.21012 0.96637 0.98967 0.96869 0.93698 0.76582 0.95488 0.90980 0.75861 0.90044 0.89125 0.90961 0.86954 0.90467 0.89730 0.86657 0.87190 0.85706 0.84446 0.85247 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.22 10.90 21.45 0.23 -47.99 16 2 C 0.05 2.44 4.00 84.65 0.34 2.78 16 3 Si 0.93 41.47 29.54 68.60 2.03 43.50 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.53 -26.39 7.11 25.60 0.18 -26.21 16 8 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.05 2.20 2.78 -13.03 -0.04 2.16 16 10 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 11 C 0.55 26.51 5.42 87.66 0.48 26.99 16 12 O -0.59 -31.58 13.62 -3.03 -0.04 -31.63 16 13 N -0.71 -28.61 4.36 -442.54 -1.93 -30.54 16 14 C 0.15 5.22 2.35 44.99 0.11 5.33 16 15 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 16 C 0.08 2.17 6.85 71.98 0.49 2.67 16 17 O -0.57 -14.15 12.83 -148.98 -1.91 -16.06 16 18 C -0.07 -1.90 4.75 30.60 0.15 -1.76 16 19 C -0.17 -5.37 5.61 -10.79 -0.06 -5.43 16 20 C -0.18 -4.91 10.18 30.60 0.31 -4.60 16 21 C -0.17 -4.33 10.25 30.59 0.31 -4.02 16 22 C -0.03 -1.66 4.51 -19.87 -0.09 -1.75 16 23 C -0.09 -4.18 8.21 22.27 0.18 -3.99 16 24 C -0.15 -6.29 10.05 22.27 0.22 -6.07 16 25 C -0.14 -5.35 10.05 22.27 0.22 -5.13 16 26 C -0.15 -5.84 10.05 22.27 0.22 -5.61 16 27 C -0.12 -5.37 8.21 22.27 0.18 -5.19 16 28 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.40 15.47 8.48 -92.71 -0.79 14.68 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.39 5.88 9.12 -74.06 -0.68 5.20 16 33 H 0.08 2.22 7.73 -2.39 -0.02 2.20 16 34 H 0.09 2.09 7.88 -2.38 -0.02 2.07 16 35 H 0.07 3.00 7.69 -2.39 -0.02 2.98 16 36 H 0.11 2.52 8.03 -2.39 -0.02 2.50 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.11 5.50 6.04 -2.91 -0.02 5.48 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.10 4.57 7.01 -2.91 -0.02 4.55 16 Total: -1.00 -65.20 361.62 1.14 -64.06 By element: Atomic # 1 Polarization: 48.95 SS G_CDS: -0.45 Total: 48.49 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 3.22 Total: -29.84 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.69 Total: -78.53 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.95 Total: -47.68 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -65.20 1.14 -64.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433958139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.918 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds