Wall clock time and date at job start Tue Mar 31 2020 08:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00124 * 2 1 4 4 H 1.48505 * 109.46856 * 240.00169 * 3 2 1 5 5 H 1.48493 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47305 * 120.00315 * 3 2 1 7 7 C 1.37878 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00268 * 185.19438 * 7 2 1 9 9 C 1.50700 * 120.00043 * 5.19495 * 7 2 1 10 10 H 1.08995 * 109.47246 * 24.87664 * 9 7 2 11 11 C 1.50701 * 109.47483 * 144.87988 * 9 7 2 12 12 O 1.21286 * 119.99908 * 119.99365 * 11 9 7 13 13 N 1.34772 * 119.99643 * 300.00289 * 11 9 7 14 14 C 1.46504 * 119.99897 * 179.97438 * 13 11 9 15 15 H 1.09006 * 109.47060 * 34.99377 * 14 13 11 16 16 C 1.52993 * 109.47194 * 274.99910 * 14 13 11 17 17 O 1.42902 * 109.46817 * 294.99663 * 16 14 13 18 18 C 1.52996 * 109.47155 * 154.99353 * 14 13 11 19 19 C 1.53001 * 109.47241 * 294.99988 * 18 14 13 20 20 C 1.52996 * 117.49886 * 243.74410 * 19 18 14 21 21 C 1.53001 * 117.49465 * 175.08695 * 19 18 14 22 22 C 1.50703 * 109.46986 * 264.88124 * 9 7 2 23 23 C 1.38237 * 119.99690 * 306.00755 * 22 9 7 24 24 C 1.38238 * 119.99826 * 179.80761 * 23 22 9 25 25 C 1.38231 * 120.00288 * 0.40365 * 24 23 22 26 26 C 1.38241 * 119.99417 * 359.85301 * 25 24 23 27 27 C 1.38225 * 120.00269 * 359.95540 * 26 25 24 28 28 H 0.96999 * 119.99652 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00564 * 359.97438 * 13 11 9 30 30 H 1.08999 * 109.47608 * 174.99798 * 16 14 13 31 31 H 1.08998 * 109.47777 * 54.99479 * 16 14 13 32 32 H 0.96699 * 114.00074 * 179.97438 * 17 16 14 33 33 H 1.09000 * 109.47276 * 55.00208 * 18 14 13 34 34 H 1.09003 * 109.47047 * 174.99592 * 18 14 13 35 35 H 1.08995 * 115.54738 * 29.42117 * 19 18 14 36 36 H 1.09001 * 117.49743 * 0.02562 * 20 19 18 37 37 H 1.08995 * 117.50215 * 145.02332 * 20 19 18 38 38 H 1.09009 * 117.49625 * 214.97952 * 21 19 18 39 39 H 1.08999 * 117.50144 * 359.97438 * 21 19 18 40 40 H 1.07997 * 120.00417 * 0.02562 * 23 22 9 41 41 H 1.08006 * 120.00129 * 180.22827 * 24 23 22 42 42 H 1.07996 * 120.00572 * 179.82732 * 25 24 23 43 43 H 1.08002 * 119.99606 * 179.97438 * 26 25 24 44 44 H 1.08009 * 120.00077 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0852 9 6 1.2557 -2.4965 -0.1171 10 1 0.3033 -2.3241 -0.6183 11 6 2.0744 -3.4764 -0.9174 12 8 2.4202 -4.5268 -0.4195 13 7 2.4226 -3.1852 -2.1864 14 6 3.2190 -4.1375 -2.9643 15 1 2.9351 -5.1546 -2.6942 16 6 4.7041 -3.9257 -2.6636 17 8 5.1038 -2.6334 -3.1243 18 6 2.9642 -3.9161 -4.4566 19 6 1.5062 -4.2488 -4.7799 20 6 1.2425 -5.4186 -5.7301 21 6 1.0199 -3.9807 -6.2056 22 6 1.0046 -3.0576 1.2589 23 6 2.0595 -3.2418 2.1332 24 6 1.8287 -3.7527 3.3968 25 6 0.5444 -4.0873 3.7832 26 6 -0.5097 -3.9081 2.9069 27 6 -0.2795 -3.3935 1.6448 28 1 -0.4849 0.8401 0.0004 29 1 2.1458 -2.3452 -2.5848 30 1 5.2907 -4.6904 -3.1727 31 1 4.8708 -3.9957 -1.5887 32 1 6.0359 -2.4303 -2.9659 33 1 3.1638 -2.8746 -4.7088 34 1 3.6219 -4.5629 -5.0374 35 1 0.7967 -4.0901 -3.9679 36 1 2.1077 -5.9514 -6.1246 37 1 0.3592 -6.0293 -5.5435 38 1 -0.0099 -3.6460 -6.3315 39 1 1.7385 -3.5669 -6.9130 40 1 3.0633 -2.9832 1.8304 41 1 2.6523 -3.8932 4.0812 42 1 0.3644 -4.4891 4.7693 43 1 -1.5132 -4.1699 3.2086 44 1 -1.1032 -3.2531 0.9604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433958142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:26 Heat of formation + Delta-G solvation = -70.505176 kcal Electronic energy + Delta-G solvation = -25188.886946 eV Core-core repulsion = 21684.447511 eV Total energy + Delta-G solvation = -3504.439435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99196 -39.65792 -38.58311 -37.57885 -35.49796 -35.29086 -32.90587 -31.53529 -31.49056 -28.92816 -27.62749 -25.79181 -23.30686 -23.21701 -23.06887 -21.91592 -21.20283 -20.93230 -18.71677 -18.38531 -17.76641 -17.51948 -16.95434 -16.44568 -16.18775 -15.90749 -15.74889 -15.52843 -15.11076 -14.82501 -14.43342 -14.39815 -14.04227 -13.99927 -13.50030 -13.41389 -13.18282 -13.00933 -12.82224 -12.73597 -12.42936 -12.30013 -12.18216 -12.08439 -11.94442 -11.66661 -11.28511 -11.12699 -10.98898 -10.68307 -10.66205 -10.36328 -9.79422 -9.55726 -9.24792 -8.20005 -6.30967 0.75833 0.81171 1.43252 1.44087 1.51529 1.98771 2.43706 2.56747 2.94381 3.09068 3.27701 3.46632 3.62158 3.95369 4.10190 4.18833 4.22647 4.30012 4.33295 4.41188 4.43760 4.48247 4.52607 4.57718 4.70482 4.79315 4.81985 4.88125 4.98037 4.98906 5.09020 5.11806 5.20977 5.29637 5.37593 5.41807 5.45294 5.65378 5.77555 5.78701 5.85120 5.96739 6.24709 6.41095 6.73042 6.84233 6.91400 7.35699 7.59732 8.87832 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.005412 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.349082 B = 5172.642450 C = 6151.427823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.050 0.950 9 C 0.053 3.947 10 H 0.062 0.938 11 C 0.528 3.472 12 O -0.595 6.595 13 N -0.704 5.704 14 C 0.146 3.854 15 H 0.082 0.918 16 C 0.071 3.929 17 O -0.577 6.577 18 C -0.073 4.073 19 C -0.173 4.173 20 C -0.173 4.173 21 C -0.174 4.174 22 C -0.036 4.036 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.129 4.129 27 C -0.143 4.143 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.391 0.609 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 -7.275 -7.339 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.169 4.169 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.031 3.969 10 H 0.080 0.920 11 C 0.317 3.683 12 O -0.477 6.477 13 N -0.353 5.353 14 C 0.041 3.959 15 H 0.100 0.900 16 C -0.008 4.008 17 O -0.384 6.384 18 C -0.111 4.111 19 C -0.191 4.191 20 C -0.210 4.210 21 C -0.211 4.211 22 C -0.037 4.037 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.443 -7.868 -7.207 11.558 hybrid contribution 0.634 1.461 0.187 1.603 sum 5.077 -6.407 -7.020 10.775 Atomic orbital electron populations 1.70016 1.07078 1.27930 1.49260 1.25593 0.95535 1.02060 0.93714 0.85674 0.78490 0.79013 0.78913 1.18969 1.20841 1.20352 1.20665 0.92526 0.89342 1.52386 0.93208 1.17985 0.96757 0.92438 0.89672 0.92013 1.21329 0.78895 0.86111 0.81994 1.90531 1.58384 1.27608 1.71179 1.45833 1.54422 1.22212 1.12881 1.21104 0.89158 0.93516 0.92127 0.89974 1.22525 0.95413 0.85608 0.97238 1.86464 1.33060 1.34784 1.84120 1.21216 0.94082 1.02993 0.92774 1.22288 0.97635 1.05242 0.93932 1.23118 1.03820 0.91068 1.02949 1.23017 1.02527 0.99164 0.96361 1.20127 0.93256 0.93085 0.97182 1.20819 0.97998 0.99627 0.94429 1.21321 0.98121 1.00034 0.95809 1.21265 0.92310 1.02138 1.00451 1.21296 0.99999 0.99941 0.93446 1.21123 0.96237 1.01021 0.97762 0.92456 0.76010 0.90306 0.95876 0.75982 0.90810 0.88643 0.90097 0.87322 0.89016 0.88942 0.87632 0.88894 0.84661 0.83485 0.84265 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.83 12.84 21.45 0.28 -49.55 16 2 C 0.03 1.72 5.45 84.66 0.46 2.18 16 3 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.51 -26.92 7.47 25.60 0.19 -26.73 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.05 2.66 2.38 -13.03 -0.03 2.63 16 10 H 0.06 3.36 7.13 -2.39 -0.02 3.35 16 11 C 0.53 24.52 7.01 87.66 0.61 25.13 16 12 O -0.59 -29.72 15.08 -3.05 -0.05 -29.76 16 13 N -0.70 -27.26 4.35 -442.54 -1.93 -29.19 16 14 C 0.15 4.52 2.35 44.99 0.11 4.63 16 15 H 0.08 2.74 7.58 -2.38 -0.02 2.72 16 16 C 0.07 2.00 6.85 71.98 0.49 2.49 16 17 O -0.58 -15.71 12.83 -148.98 -1.91 -17.62 16 18 C -0.07 -1.80 4.75 30.59 0.15 -1.66 16 19 C -0.17 -4.36 5.61 -10.79 -0.06 -4.42 16 20 C -0.17 -3.50 10.18 30.62 0.31 -3.19 16 21 C -0.17 -3.61 10.25 30.62 0.31 -3.30 16 22 C -0.04 -1.75 4.30 -19.87 -0.09 -1.84 16 23 C -0.11 -5.17 8.31 22.27 0.18 -4.98 16 24 C -0.13 -5.24 10.05 22.27 0.22 -5.02 16 25 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 26 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 27 C -0.14 -6.52 9.67 22.27 0.22 -6.30 16 28 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.41 15.96 8.49 -92.71 -0.79 15.17 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.39 7.15 9.12 -74.06 -0.68 6.47 16 33 H 0.07 1.95 7.73 -2.39 -0.02 1.93 16 34 H 0.10 1.88 7.88 -2.39 -0.02 1.86 16 35 H 0.08 2.51 7.69 -2.39 -0.02 2.49 16 36 H 0.11 1.83 8.03 -2.39 -0.02 1.81 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 4.51 7.89 -2.91 -0.02 4.49 16 41 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 43 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.10 4.73 7.96 -2.91 -0.02 4.71 16 Total: -1.00 -65.78 371.17 1.49 -64.28 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -0.46 Total: 47.50 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 3.53 Total: -29.87 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.65 Total: -78.74 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.96 Total: -47.38 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -65.78 1.49 -64.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433958142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.221 kcal (2) G-P(sol) polarization free energy of solvation -65.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds