Wall clock time and date at job start Tue Mar 31 2020 08:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48506 * 109.47028 * 270.00142 * 3 2 1 5 5 H 1.48504 * 109.47142 * 30.00186 * 3 2 1 6 6 H 1.48505 * 109.47087 * 150.00203 * 3 2 1 7 7 C 1.37873 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99735 * 185.08660 * 7 2 1 9 9 C 1.50699 * 120.00411 * 5.09607 * 7 2 1 10 10 H 1.08998 * 109.47365 * 185.77190 * 9 7 2 11 11 C 1.50703 * 109.46615 * 305.76806 * 9 7 2 12 12 O 1.21286 * 119.99691 * 120.00415 * 11 9 7 13 13 N 1.34775 * 120.00578 * 299.99953 * 11 9 7 14 14 C 1.46498 * 120.00358 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47217 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.46884 * 54.99530 * 16 15 14 18 18 O 1.42901 * 109.46811 * 294.99937 * 16 15 14 19 19 C 1.52996 * 109.47453 * 174.99836 * 16 15 14 20 20 C 1.52991 * 117.50022 * 248.74817 * 19 16 15 21 21 C 1.52998 * 117.49768 * 180.08633 * 19 16 15 22 22 C 1.50695 * 109.47444 * 65.76830 * 9 7 2 23 23 C 1.38241 * 120.00079 * 355.08466 * 22 9 7 24 24 C 1.38232 * 120.00134 * 180.02562 * 23 22 9 25 25 C 1.38239 * 119.99754 * 359.94899 * 24 23 22 26 26 C 1.38227 * 120.00273 * 0.02562 * 25 24 23 27 27 C 1.38236 * 119.99966 * 175.05931 * 22 9 7 28 28 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99437 * 0.02562 * 13 11 9 30 30 H 1.08998 * 109.47133 * 300.00175 * 14 13 11 31 31 H 1.09006 * 109.46805 * 60.00334 * 14 13 11 32 32 H 1.09007 * 109.47260 * 299.99998 * 15 14 13 33 33 H 1.08995 * 109.47701 * 60.00195 * 15 14 13 34 34 H 0.96692 * 113.99984 * 299.99741 * 18 16 15 35 35 H 1.09000 * 115.54661 * 34.41673 * 19 16 15 36 36 H 1.09007 * 117.50132 * 359.97438 * 20 19 16 37 37 H 1.09007 * 117.50178 * 145.01795 * 20 19 16 38 38 H 1.09005 * 117.49526 * 214.97572 * 21 19 16 39 39 H 1.08990 * 117.50333 * 0.02562 * 21 19 16 40 40 H 1.08003 * 119.99372 * 359.97249 * 23 22 9 41 41 H 1.07996 * 119.99817 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.99351 * 179.72696 * 25 24 23 43 43 H 1.08004 * 120.00104 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00272 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0824 9 6 1.2556 -2.4965 -0.1170 10 1 1.9507 -3.3274 0.0030 11 6 0.1994 -2.5662 0.9557 12 8 -0.9693 -2.6736 0.6500 13 7 0.5536 -2.5094 2.2549 14 6 -0.4732 -2.5766 3.2977 15 6 0.1908 -2.4908 4.6734 16 6 -0.8815 -2.5617 5.7626 17 1 -1.4807 -3.4616 5.6244 18 8 -1.7240 -1.4106 5.6770 19 6 -0.2106 -2.6016 7.1370 20 6 -0.3118 -3.9030 7.9350 21 6 -1.1200 -2.6762 8.3651 22 6 0.6015 -2.5805 -1.4721 23 6 0.6632 -1.5041 -2.3373 24 6 0.0628 -1.5809 -3.5800 25 6 -0.5984 -2.7346 -3.9580 26 6 -0.6596 -3.8111 -3.0932 27 6 -0.0596 -3.7341 -1.8501 28 1 -0.4850 0.8400 0.0004 29 1 1.4883 -2.4232 2.4994 30 1 -1.1680 -1.7454 3.1776 31 1 -1.0153 -3.5185 3.2136 32 1 0.8859 -3.3218 4.7938 33 1 0.7327 -1.5489 4.7573 34 1 -1.2567 -0.5718 5.7909 35 1 0.7108 -2.0263 7.2272 36 1 -0.8568 -4.7307 7.4810 37 1 0.5428 -4.1838 8.5506 38 1 -0.7966 -2.1504 9.2635 39 1 -2.1962 -2.6973 8.1939 40 1 1.1797 -0.6028 -2.0418 41 1 0.1106 -0.7398 -4.2557 42 1 -1.0712 -2.7929 -4.9273 43 1 -1.1765 -4.7123 -3.3884 44 1 -0.1078 -4.5751 -1.1742 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434415533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:39 Heat of formation + Delta-G solvation = -44.615878 kcal Electronic energy + Delta-G solvation = -24731.964767 eV Core-core repulsion = 21228.647976 eV Total energy + Delta-G solvation = -3503.316791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.02967 -38.63684 -37.37167 -35.65355 -34.04315 -33.62656 -30.91457 -30.57564 -29.62700 -27.45287 -25.62822 -23.81631 -22.55263 -21.68947 -21.22019 -21.03889 -20.35464 -19.06409 -16.89620 -16.67927 -16.02717 -15.64671 -15.50145 -15.13008 -14.84253 -14.66395 -14.22763 -13.80676 -13.66645 -13.59395 -12.95540 -12.68064 -12.40327 -12.32167 -12.06151 -11.83882 -11.74475 -11.66157 -11.30799 -10.97346 -10.86246 -10.82287 -10.70840 -10.68979 -10.36756 -10.34598 -10.05292 -9.91888 -9.68554 -9.34624 -8.61979 -8.23038 -7.85036 -7.74465 -7.38150 -6.15566 -4.30303 2.51858 2.61403 3.18256 3.27964 3.28154 3.52283 4.11762 4.21898 4.40965 4.49378 4.62324 4.74967 4.87629 4.98946 5.04835 5.09523 5.18773 5.42462 5.44450 5.53677 5.70616 5.81473 5.84710 5.87857 5.92804 5.95158 6.04807 6.06796 6.32911 6.41577 6.53760 6.63602 6.67931 6.85522 6.94406 7.11096 7.24097 7.51975 7.62383 7.66468 7.69545 7.71492 7.82997 8.16383 8.28545 8.65994 8.89378 9.34551 9.83982 10.85124 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.003880 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.161352 B = 7213.953357 C = 8355.823292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.071 3.929 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.054 3.946 10 H 0.054 0.946 11 C 0.555 3.445 12 O -0.549 6.549 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.157 4.157 16 C 0.141 3.859 17 H 0.098 0.902 18 O -0.555 6.555 19 C -0.191 4.191 20 C -0.175 4.175 21 C -0.169 4.169 22 C -0.017 4.017 23 C -0.060 4.060 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.114 4.114 28 H 0.266 0.734 29 H 0.393 0.607 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.375 0.625 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -4.807 10.158 11.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.033 3.967 10 H 0.072 0.928 11 C 0.344 3.656 12 O -0.425 6.425 13 N -0.391 5.391 14 C 0.008 3.992 15 C -0.195 4.195 16 C 0.081 3.919 17 H 0.116 0.884 18 O -0.360 6.360 19 C -0.210 4.210 20 C -0.212 4.212 21 C -0.206 4.206 22 C -0.018 4.018 23 C -0.078 4.078 24 C -0.167 4.167 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.132 4.132 28 H 0.077 0.923 29 H 0.226 0.774 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.222 0.778 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.481 -5.214 9.830 11.138 hybrid contribution 1.219 1.584 0.303 2.022 sum 1.700 -3.630 10.133 10.897 Atomic orbital electron populations 1.70083 1.05296 1.27060 1.45168 1.25054 0.94879 0.99213 0.94423 0.86696 0.79962 0.83570 0.78551 1.20248 1.21186 1.19680 1.20753 0.93299 0.88997 1.54601 0.91496 1.17917 0.92543 0.98178 0.88045 0.92763 1.20825 0.90128 0.72160 0.82457 1.90533 1.20423 1.49427 1.82162 1.45763 1.09230 1.78255 1.05838 1.20933 0.91578 1.01345 0.85321 1.22455 0.98719 1.03149 0.95225 1.21394 0.90828 0.89624 0.90014 0.88444 1.86603 1.38023 1.16261 1.95157 1.23121 1.01712 1.02463 0.93678 1.22955 1.02937 0.91733 1.03554 1.22862 0.98498 1.01570 0.97681 1.19860 0.94584 0.91929 0.95409 1.21434 0.96266 0.98892 0.91223 1.21065 1.00845 0.97217 0.97536 1.20792 1.01870 0.94571 0.98991 1.20780 1.01983 0.98187 0.95170 1.20882 0.98649 0.98252 0.95443 0.92344 0.77422 0.91781 0.93269 0.90681 0.91032 0.77792 0.87650 0.88596 0.88797 0.88984 0.88380 0.84600 0.87996 0.88100 0.87984 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.84 10.42 55.43 0.58 -22.27 16 2 C 0.07 1.78 3.19 -17.82 -0.06 1.73 16 3 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.54 -13.14 7.62 -34.44 -0.26 -13.40 16 8 H 0.07 1.58 7.82 -52.48 -0.41 1.17 16 9 C 0.05 1.30 2.67 -94.08 -0.25 1.05 16 10 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.56 13.43 5.37 -10.98 -0.06 13.37 16 12 O -0.55 -15.25 15.15 5.55 0.08 -15.17 16 13 N -0.74 -14.76 5.46 -60.29 -0.33 -15.08 16 14 C 0.13 2.35 5.57 -4.05 -0.02 2.32 16 15 C -0.16 -1.99 4.99 -26.73 -0.13 -2.13 16 16 C 0.14 1.63 3.16 -26.73 -0.08 1.55 16 17 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 18 O -0.56 -7.29 12.78 -35.23 -0.45 -7.74 16 19 C -0.19 -1.82 5.36 -90.63 -0.49 -2.31 16 20 C -0.17 -1.49 10.18 -26.70 -0.27 -1.76 16 21 C -0.17 -1.51 10.16 -26.69 -0.27 -1.78 16 22 C -0.02 -0.41 4.50 -104.62 -0.47 -0.88 16 23 C -0.06 -1.46 8.00 -39.58 -0.32 -1.78 16 24 C -0.15 -3.20 10.05 -39.58 -0.40 -3.60 16 25 C -0.14 -2.89 10.05 -39.58 -0.40 -3.28 16 26 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 27 C -0.11 -2.57 8.74 -39.58 -0.35 -2.91 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.39 7.06 8.36 -40.82 -0.34 6.72 16 30 H 0.06 1.33 7.82 -51.93 -0.41 0.93 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.37 3.85 9.04 45.56 0.41 4.26 16 35 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.14 3.45 4.97 -52.48 -0.26 3.19 16 41 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -30.86 363.93 -9.92 -40.79 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -6.04 Total: 16.60 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -4.23 Total: -17.12 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.25 Total: -37.35 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.37 Total: -22.91 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.86 -9.92 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434415533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.830 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds