Wall clock time and date at job start Tue Mar 31 2020 08:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00133 * 2 1 4 4 H 1.48499 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46711 * 299.99979 * 3 2 1 6 6 H 1.48503 * 109.47150 * 59.99801 * 3 2 1 7 7 C 1.37875 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99972 * 175.77821 * 7 2 1 9 9 C 1.50696 * 120.00216 * 356.04666 * 7 2 1 10 10 H 1.09002 * 109.47530 * 175.61954 * 9 7 2 11 11 C 1.50702 * 109.46711 * 55.62391 * 9 7 2 12 12 O 1.21286 * 120.00329 * 239.99745 * 11 9 7 13 13 N 1.34780 * 120.00062 * 60.00095 * 11 9 7 14 14 C 1.46499 * 120.00224 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47239 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47175 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.47093 * 54.99888 * 16 15 14 18 18 O 1.42904 * 109.46961 * 295.00212 * 16 15 14 19 19 C 1.52997 * 109.47258 * 175.00109 * 16 15 14 20 20 C 1.53006 * 117.49671 * 248.74674 * 19 16 15 21 21 C 1.52998 * 117.49746 * 180.08987 * 19 16 15 22 22 C 1.50698 * 109.47439 * 295.62866 * 9 7 2 23 23 C 1.38240 * 119.99752 * 346.67351 * 22 9 7 24 24 C 1.38234 * 119.99776 * 179.81152 * 23 22 9 25 25 C 1.38238 * 120.00283 * 0.40147 * 24 23 22 26 26 C 1.38236 * 119.99804 * 359.85198 * 25 24 23 27 27 C 1.38235 * 120.00384 * 166.95228 * 22 9 7 28 28 H 0.97003 * 120.00257 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99954 * 359.97438 * 13 11 9 30 30 H 1.09000 * 109.46993 * 300.00215 * 14 13 11 31 31 H 1.09001 * 109.46873 * 59.99635 * 14 13 11 32 32 H 1.08998 * 109.46769 * 300.00181 * 15 14 13 33 33 H 1.09001 * 109.46885 * 60.00361 * 15 14 13 34 34 H 0.96702 * 113.99533 * 299.99512 * 18 16 15 35 35 H 1.08995 * 115.55159 * 34.41516 * 19 16 15 36 36 H 1.09000 * 117.49846 * 0.02562 * 20 19 16 37 37 H 1.09005 * 117.49458 * 145.01598 * 20 19 16 38 38 H 1.08997 * 117.49474 * 214.97373 * 21 19 16 39 39 H 1.08998 * 117.50289 * 359.97438 * 21 19 16 40 40 H 1.07998 * 119.99870 * 359.97438 * 23 22 9 41 41 H 1.08005 * 119.99821 * 180.23033 * 24 23 22 42 42 H 1.07991 * 120.00060 * 179.83275 * 25 24 23 43 43 H 1.07994 * 119.99952 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.99684 * 359.97155 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0823 -1.1953 -0.0683 9 6 1.2538 -2.4975 0.0911 10 1 1.9544 -3.3275 -0.0005 11 6 0.2396 -2.5713 -1.0212 12 8 -0.9399 -2.6800 -0.7602 13 7 0.6432 -2.5166 -2.3059 14 6 -0.3426 -2.5889 -3.3872 15 6 0.3735 -2.5059 -4.7367 16 6 -0.6561 -2.5808 -5.8659 17 1 -1.4078 -1.8042 -5.7243 18 8 -1.2872 -3.8629 -5.8509 19 6 0.0448 -2.3731 -7.2099 20 6 -0.2545 -1.0795 -7.9703 21 6 -0.8204 -2.4106 -8.4712 22 6 0.5484 -2.5798 1.4203 23 6 0.8700 -1.6915 2.4295 24 6 0.2202 -1.7644 3.6474 25 6 -0.7453 -2.7308 3.8590 26 6 -1.0632 -3.6224 2.8515 27 6 -0.4162 -3.5470 1.6323 28 1 -0.4851 0.8400 0.0004 29 1 1.5865 -2.4293 -2.5147 30 1 -0.8853 -3.5319 -3.3216 31 1 -1.0436 -1.7592 -3.2958 32 1 0.9165 -1.5631 -4.8024 33 1 1.0741 -3.3359 -4.8278 34 1 -0.6768 -4.6030 -5.9718 35 1 1.0551 -2.7760 -7.2804 36 1 -0.9504 -0.3763 -7.5128 37 1 0.5589 -0.6317 -8.5413 38 1 -0.3791 -2.8380 -9.3716 39 1 -1.8889 -2.5837 -8.3435 40 1 1.6270 -0.9389 2.2655 41 1 0.4688 -1.0680 4.4347 42 1 -1.2510 -2.7895 4.8114 43 1 -1.8172 -4.3777 3.0169 44 1 -0.6645 -4.2436 0.8451 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434415534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:42 Heat of formation + Delta-G solvation = -47.793576 kcal Electronic energy + Delta-G solvation = -24716.568123 eV Core-core repulsion = 21213.113537 eV Total energy + Delta-G solvation = -3503.454586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.05979 -38.65540 -37.34744 -35.67804 -34.06629 -33.54816 -30.86405 -30.60419 -29.66543 -27.42403 -25.63283 -23.80118 -22.54009 -21.70701 -21.22303 -21.05149 -20.34672 -19.09532 -16.86579 -16.66701 -16.01980 -15.65430 -15.44044 -15.13202 -14.94544 -14.69695 -14.13275 -13.92659 -13.60892 -13.54022 -12.94539 -12.82349 -12.40150 -12.21609 -11.92334 -11.90703 -11.73611 -11.67127 -11.28595 -10.98737 -10.87738 -10.84006 -10.70368 -10.69879 -10.41200 -10.37121 -10.02039 -9.94024 -9.64374 -9.33305 -8.72516 -8.21144 -7.87640 -7.67237 -7.37960 -6.12796 -4.27681 2.56311 2.62007 3.18798 3.29531 3.30577 3.52353 4.10784 4.23330 4.38852 4.46684 4.61343 4.75382 4.87402 4.98493 5.03935 5.15394 5.17958 5.41381 5.46287 5.51014 5.71182 5.82531 5.87112 5.87355 5.94114 5.99488 6.07189 6.08513 6.35470 6.44848 6.46727 6.66300 6.70230 6.84182 6.94816 7.15334 7.23009 7.55954 7.61452 7.63738 7.67503 7.70819 7.81823 8.17920 8.29153 8.66501 8.87909 9.38646 9.80514 10.88610 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003939 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.245640 B = 7106.591656 C = 8438.557655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.055 3.945 10 H 0.056 0.944 11 C 0.552 3.448 12 O -0.549 6.549 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.157 4.157 16 C 0.140 3.860 17 H 0.099 0.901 18 O -0.556 6.556 19 C -0.191 4.191 20 C -0.174 4.174 21 C -0.169 4.169 22 C -0.015 4.015 23 C -0.072 4.072 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.099 4.099 28 H 0.264 0.736 29 H 0.393 0.607 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.373 0.627 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -4.871 -10.235 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.132 4.132 3 Si 0.711 3.289 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.034 3.966 10 H 0.074 0.926 11 C 0.341 3.659 12 O -0.425 6.425 13 N -0.391 5.391 14 C 0.008 3.992 15 C -0.195 4.195 16 C 0.081 3.919 17 H 0.117 0.883 18 O -0.361 6.361 19 C -0.210 4.210 20 C -0.211 4.211 21 C -0.206 4.206 22 C -0.016 4.016 23 C -0.090 4.090 24 C -0.165 4.165 25 C -0.164 4.164 26 C -0.162 4.162 27 C -0.117 4.117 28 H 0.074 0.926 29 H 0.226 0.774 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.220 0.780 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.784 -4.455 -9.939 10.920 hybrid contribution 1.253 1.095 -0.295 1.690 sum 2.038 -3.360 -10.234 10.963 Atomic orbital electron populations 1.70058 1.05439 1.26816 1.45083 1.25048 0.94775 0.99130 0.94268 0.86657 0.80311 0.84062 0.77866 1.19483 1.21051 1.20715 1.20727 0.93075 0.88841 1.55156 0.91532 1.17892 0.92644 0.98144 0.87941 0.92633 1.20923 0.89941 0.72087 0.82952 1.90531 1.19096 1.49500 1.83382 1.45774 1.09473 1.78143 1.05671 1.20940 0.91902 1.01496 0.84870 1.22448 0.98713 1.03247 0.95109 1.21415 0.94129 0.86147 0.90213 0.88294 1.86616 1.38474 1.15379 1.95593 1.23102 1.00597 1.03388 0.93880 1.22964 1.03615 0.90887 1.03684 1.22861 1.00087 1.00704 0.96947 1.19855 0.94272 0.92300 0.95139 1.21170 0.98973 0.97432 0.91414 1.20993 0.98661 0.99093 0.97787 1.20778 0.99679 0.97552 0.98363 1.20840 1.00864 1.00049 0.94417 1.20994 0.96227 0.99077 0.95438 0.92566 0.77380 0.92322 0.92692 0.90368 0.91295 0.78046 0.87672 0.88528 0.88759 0.88993 0.88392 0.85467 0.88020 0.88174 0.88046 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.15 11.04 55.43 0.61 -22.53 16 2 C 0.08 1.91 3.93 -17.82 -0.07 1.84 16 3 Si 0.88 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.54 -13.17 7.11 -34.44 -0.24 -13.41 16 8 H 0.07 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 10 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 11 C 0.55 13.21 5.33 -10.98 -0.06 13.15 16 12 O -0.55 -14.94 13.88 5.55 0.08 -14.86 16 13 N -0.74 -14.60 5.46 -60.29 -0.33 -14.93 16 14 C 0.13 2.31 5.57 -4.04 -0.02 2.29 16 15 C -0.16 -1.97 4.99 -26.73 -0.13 -2.10 16 16 C 0.14 1.62 3.16 -26.73 -0.08 1.53 16 17 H 0.10 1.26 7.90 -51.93 -0.41 0.85 16 18 O -0.56 -6.67 12.78 -35.23 -0.45 -7.12 16 19 C -0.19 -1.82 5.36 -90.62 -0.49 -2.31 16 20 C -0.17 -1.59 10.18 -26.69 -0.27 -1.86 16 21 C -0.17 -1.51 10.16 -26.69 -0.27 -1.78 16 22 C -0.01 -0.35 4.59 -104.62 -0.48 -0.83 16 23 C -0.07 -1.70 8.39 -39.58 -0.33 -2.03 16 24 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 25 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 26 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 27 C -0.10 -2.29 8.21 -39.58 -0.32 -2.61 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.39 6.99 8.36 -40.82 -0.34 6.65 16 30 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.37 3.16 9.05 45.56 0.41 3.57 16 35 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.10 0.90 8.05 -51.93 -0.42 0.49 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.13 3.07 6.05 -52.49 -0.32 2.76 16 41 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.11 2.48 6.99 -52.49 -0.37 2.11 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -30.94 363.54 -9.91 -40.85 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.04 Total: 15.67 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -4.23 Total: -17.31 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.28 Total: -37.47 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.37 Total: -21.99 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.94 -9.91 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434415534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.947 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds