Wall clock time and date at job start Tue Mar 31 2020 08:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47123 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47454 * 29.99588 * 3 2 1 6 6 H 1.48503 * 109.47180 * 149.99716 * 3 2 1 7 7 C 1.37872 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00419 * 185.19282 * 7 2 1 9 9 C 1.50707 * 119.99923 * 5.20070 * 7 2 1 10 10 H 1.09002 * 109.47053 * 24.87930 * 9 7 2 11 11 C 1.50701 * 109.47184 * 144.87640 * 9 7 2 12 12 O 1.21277 * 119.99948 * 119.99590 * 11 9 7 13 13 N 1.34778 * 119.99874 * 300.00110 * 11 9 7 14 14 C 1.46502 * 119.99836 * 180.02562 * 13 11 9 15 15 C 1.53007 * 109.46952 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46583 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.47183 * 304.99733 * 16 15 14 18 18 O 1.42900 * 109.47321 * 64.99921 * 16 15 14 19 19 C 1.53005 * 109.46507 * 184.99611 * 16 15 14 20 20 C 1.52999 * 117.49930 * 248.74529 * 19 16 15 21 21 C 1.53002 * 117.49786 * 180.08458 * 19 16 15 22 22 C 1.50695 * 109.46824 * 264.87466 * 9 7 2 23 23 C 1.38234 * 120.00513 * 306.01085 * 22 9 7 24 24 C 1.38233 * 120.00461 * 179.79150 * 23 22 9 25 25 C 1.38240 * 119.99455 * 0.43484 * 24 23 22 26 26 C 1.38229 * 120.00310 * 359.82034 * 25 24 23 27 27 C 1.38237 * 119.99655 * 126.28665 * 22 9 7 28 28 H 0.97001 * 119.99703 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00040 * 359.97438 * 13 11 9 30 30 H 1.08993 * 109.47606 * 59.99442 * 14 13 11 31 31 H 1.09002 * 109.46896 * 299.99154 * 14 13 11 32 32 H 1.08997 * 109.47175 * 59.99753 * 15 14 13 33 33 H 1.09002 * 109.46609 * 299.99305 * 15 14 13 34 34 H 0.96703 * 113.99549 * 59.99665 * 18 16 15 35 35 H 1.08997 * 115.54765 * 34.42005 * 19 16 15 36 36 H 1.08999 * 117.49747 * 0.02562 * 20 19 16 37 37 H 1.08996 * 117.49732 * 145.02610 * 20 19 16 38 38 H 1.08994 * 117.49824 * 214.98104 * 21 19 16 39 39 H 1.09002 * 117.49554 * 359.97438 * 21 19 16 40 40 H 1.08003 * 119.99440 * 359.97438 * 23 22 9 41 41 H 1.07993 * 120.00437 * 180.27568 * 24 23 22 42 42 H 1.08003 * 119.99485 * 179.83591 * 25 24 23 43 43 H 1.08004 * 120.00342 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00165 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1960 0.0852 9 6 1.2557 -2.4965 -0.1172 10 1 0.3033 -2.3240 -0.6186 11 6 2.0746 -3.4762 -0.9176 12 8 2.4203 -4.5267 -0.4198 13 7 2.4227 -3.1850 -2.1866 14 6 3.2183 -4.1377 -2.9649 15 6 3.4739 -3.5675 -4.3616 16 6 4.3053 -4.5622 -5.1742 17 1 5.2181 -4.8031 -4.6294 18 8 3.5478 -5.7553 -5.3856 19 6 4.6664 -3.9411 -6.5251 20 6 4.0164 -4.5397 -7.7741 21 6 5.5004 -4.7857 -7.4905 22 6 1.0047 -3.0577 1.2587 23 6 2.0594 -3.2419 2.1331 24 6 1.8286 -3.7527 3.3967 25 6 0.5442 -4.0876 3.7827 26 6 -0.5098 -3.9083 2.9065 27 6 -0.2796 -3.3936 1.6444 28 1 -0.4850 0.8401 -0.0004 29 1 2.1459 -2.3449 -2.5849 30 1 2.6764 -5.0795 -3.0501 31 1 4.1707 -4.3105 -2.4637 32 1 4.0161 -2.6258 -4.2760 33 1 2.5217 -3.3943 -4.8631 34 1 2.7202 -5.6157 -5.8659 35 1 4.8429 -2.8656 -6.5158 36 1 3.3312 -5.3757 -7.6334 37 1 3.7657 -3.8580 -8.5868 38 1 6.2253 -4.2657 -8.1167 39 1 5.7922 -5.7836 -7.1630 40 1 3.0634 -2.9840 1.8299 41 1 2.6520 -3.8924 4.0813 42 1 0.3642 -4.4891 4.7690 43 1 -1.5133 -4.1704 3.2080 44 1 -1.1031 -3.2535 0.9598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434415535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:45 Heat of formation + Delta-G solvation = -55.183082 kcal Electronic energy + Delta-G solvation = -24244.267037 eV Core-core repulsion = 20740.492018 eV Total energy + Delta-G solvation = -3503.775019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.34663 -38.90178 -37.66252 -35.45582 -34.30898 -33.62679 -31.19487 -30.86792 -29.89720 -27.59040 -25.88567 -23.82528 -22.76680 -21.85412 -21.54629 -20.89698 -20.49989 -19.20536 -17.02430 -16.76024 -16.19041 -16.06245 -15.89986 -15.44269 -15.09360 -14.48382 -14.32372 -14.10186 -13.87095 -13.63762 -12.98423 -12.73894 -12.68794 -12.40362 -12.19214 -11.98376 -11.74562 -11.62551 -11.58766 -11.15806 -11.10336 -11.04118 -10.95589 -10.75791 -10.39750 -10.37070 -10.24364 -10.07208 -9.91843 -9.40843 -8.77271 -8.58521 -8.27984 -7.90537 -7.56624 -6.27505 -4.33854 2.41824 2.44616 3.17019 3.25898 3.28796 3.48831 3.75914 3.92817 4.26943 4.28177 4.48874 4.67517 4.70582 4.87357 4.92680 5.07441 5.09645 5.27793 5.34394 5.41815 5.65403 5.68696 5.75559 5.81021 5.82923 5.87711 5.91230 5.92919 6.14064 6.23159 6.26476 6.44509 6.54076 6.64066 6.88895 7.01301 7.18394 7.27156 7.40696 7.48290 7.48898 7.63088 7.78184 7.99011 8.10214 8.42140 8.70694 9.27577 9.33347 10.80787 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.003722 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.367177 B = 7520.886118 C = 9006.632457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.050 3.950 10 H 0.088 0.912 11 C 0.526 3.474 12 O -0.567 6.567 13 N -0.732 5.732 14 C 0.125 3.875 15 C -0.159 4.159 16 C 0.140 3.860 17 H 0.105 0.895 18 O -0.558 6.558 19 C -0.190 4.190 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.008 4.008 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.373 0.627 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -5.103 -10.691 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.029 3.971 10 H 0.106 0.894 11 C 0.315 3.685 12 O -0.446 6.446 13 N -0.385 5.385 14 C 0.001 3.999 15 C -0.197 4.197 16 C 0.080 3.920 17 H 0.122 0.878 18 O -0.364 6.364 19 C -0.209 4.209 20 C -0.216 4.216 21 C -0.209 4.209 22 C -0.009 4.009 23 C -0.104 4.104 24 C -0.153 4.153 25 C -0.168 4.168 26 C -0.150 4.150 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.221 0.779 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.194 -5.998 -10.011 12.774 hybrid contribution -0.131 1.859 -0.446 1.917 sum 5.063 -4.139 -10.457 12.334 Atomic orbital electron populations 1.69927 1.05988 1.27370 1.48054 1.24974 0.94888 0.99407 0.93883 0.86489 0.79992 0.82765 0.78247 1.20396 1.21057 1.19651 1.20696 0.93215 0.88428 1.52814 0.91953 1.18119 0.97852 0.92176 0.88957 0.89439 1.21635 0.79087 0.86854 0.80908 1.90584 1.56646 1.26899 1.70483 1.45933 1.56115 1.22138 1.14276 1.21088 0.96055 0.93080 0.89690 1.22465 1.01320 0.99799 0.96146 1.21356 0.94435 0.84203 0.91960 0.87757 1.86611 1.37547 1.32599 1.79612 1.23181 1.06112 0.99622 0.91951 1.22951 0.96384 1.03493 0.98731 1.22918 0.93836 1.01505 1.02669 1.20014 0.92157 0.91638 0.97108 1.20817 0.99010 0.97667 0.92866 1.20947 0.96282 1.01400 0.96656 1.20788 0.93353 1.03654 0.98963 1.20895 0.97905 1.01556 0.94673 1.20982 0.96911 0.99554 0.96193 0.92379 0.76180 0.91742 0.92452 0.90193 0.90886 0.77858 0.87126 0.88245 0.88912 0.89035 0.88424 0.87187 0.87627 0.87744 0.87589 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.08 12.84 55.43 0.71 -22.37 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.51 -12.83 7.47 -34.44 -0.26 -13.09 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.05 1.20 2.38 -94.07 -0.22 0.97 16 10 H 0.09 2.20 7.13 -51.93 -0.37 1.83 16 11 C 0.53 11.84 7.04 -10.98 -0.08 11.76 16 12 O -0.57 -14.14 15.42 5.56 0.09 -14.06 16 13 N -0.73 -13.41 5.46 -60.29 -0.33 -13.74 16 14 C 0.13 1.92 5.57 -4.04 -0.02 1.90 16 15 C -0.16 -1.76 4.99 -26.73 -0.13 -1.90 16 16 C 0.14 1.41 3.33 -26.73 -0.09 1.32 16 17 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 18 O -0.56 -6.01 12.03 -35.23 -0.42 -6.43 16 19 C -0.19 -1.63 5.71 -90.62 -0.52 -2.15 16 20 C -0.18 -1.37 9.74 -26.69 -0.26 -1.63 16 21 C -0.17 -1.41 10.19 -26.69 -0.27 -1.68 16 22 C -0.01 -0.19 4.30 -104.63 -0.45 -0.64 16 23 C -0.09 -1.97 8.30 -39.58 -0.33 -2.30 16 24 C -0.13 -2.73 10.05 -39.58 -0.40 -3.13 16 25 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 26 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 27 C -0.12 -2.64 9.67 -39.58 -0.38 -3.02 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.40 6.95 8.36 -40.82 -0.34 6.61 16 30 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.37 2.96 7.56 45.56 0.34 3.31 16 35 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.10 0.72 6.37 -51.93 -0.33 0.39 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 2.57 7.90 -52.48 -0.41 2.15 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -29.91 369.39 -9.84 -39.75 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.13 Total: 14.67 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -4.30 Total: -18.11 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.38 Total: -36.11 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.34 Total: -20.49 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.91 -9.84 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434415535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.434 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds