Wall clock time and date at job start Tue Mar 31 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46941 * 269.99999 * 3 2 1 5 5 H 1.48495 * 109.47063 * 29.99855 * 3 2 1 6 6 H 1.48501 * 109.47038 * 150.00117 * 3 2 1 7 7 C 1.37876 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99710 * 186.39179 * 7 2 1 9 9 C 1.50697 * 120.00192 * 6.39002 * 7 2 1 10 10 H 1.09006 * 109.46597 * 333.92713 * 9 7 2 11 11 C 1.50702 * 109.46854 * 213.93185 * 9 7 2 12 12 O 1.21284 * 119.99332 * 239.99327 * 11 9 7 13 13 N 1.34774 * 120.00442 * 59.99894 * 11 9 7 14 14 C 1.46499 * 119.99779 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.47007 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47349 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.47344 * 305.00591 * 16 15 14 18 18 O 1.42902 * 109.46808 * 65.00445 * 16 15 14 19 19 C 1.52996 * 109.46919 * 184.99950 * 16 15 14 20 20 C 1.53002 * 117.49967 * 248.74310 * 19 16 15 21 21 C 1.53006 * 117.49362 * 180.08655 * 19 16 15 22 22 C 1.50689 * 109.47203 * 93.92820 * 9 7 2 23 23 C 1.38237 * 120.00112 * 53.84756 * 22 9 7 24 24 C 1.38240 * 120.00115 * 179.81040 * 23 22 9 25 25 C 1.38231 * 119.99893 * 0.39807 * 24 23 22 26 26 C 1.38236 * 120.00157 * 359.85675 * 25 24 23 27 27 C 1.38230 * 119.99826 * 359.95471 * 26 25 24 28 28 H 0.96999 * 119.99870 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99931 * 359.97438 * 13 11 9 30 30 H 1.09004 * 109.46904 * 60.00243 * 14 13 11 31 31 H 1.08998 * 109.47574 * 300.00033 * 14 13 11 32 32 H 1.09004 * 109.46928 * 60.00457 * 15 14 13 33 33 H 1.08998 * 109.47143 * 300.00496 * 15 14 13 34 34 H 0.96701 * 113.99938 * 60.00046 * 18 16 15 35 35 H 1.09001 * 115.55236 * 34.42317 * 19 16 15 36 36 H 1.09001 * 117.50197 * 0.02562 * 20 19 16 37 37 H 1.09004 * 117.49275 * 145.02518 * 20 19 16 38 38 H 1.09001 * 117.49496 * 214.97813 * 21 19 16 39 39 H 1.08993 * 117.50429 * 359.97438 * 21 19 16 40 40 H 1.07999 * 119.99802 * 0.02562 * 23 22 9 41 41 H 1.07998 * 119.99822 * 180.23180 * 24 23 22 42 42 H 1.07998 * 120.00278 * 179.83889 * 25 24 23 43 43 H 1.08003 * 120.00123 * 179.97438 * 26 25 24 44 44 H 1.08005 * 120.00313 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1968 0.1047 9 6 1.2581 -2.4952 -0.1441 10 1 0.2376 -2.3708 0.2183 11 6 1.9507 -3.5638 0.6617 12 8 2.3791 -4.5561 0.1115 13 7 2.0939 -3.4169 1.9938 14 6 2.7666 -4.4561 2.7771 15 6 2.7959 -4.0454 4.2507 16 6 3.4991 -5.1303 5.0688 17 1 3.0120 -6.0897 4.8946 18 8 4.8695 -5.2128 4.6721 19 6 3.4189 -4.7800 6.5559 20 6 4.7197 -4.3913 7.2613 21 6 4.0704 -5.7480 7.5457 22 6 1.2299 -2.8994 -1.5955 23 6 2.4096 -2.9924 -2.3102 24 6 2.3841 -3.3670 -3.6406 25 6 1.1783 -3.6408 -4.2585 26 6 -0.0018 -3.5427 -3.5453 27 6 0.0240 -3.1719 -2.2140 28 1 -0.4850 0.8400 0.0004 29 1 1.7515 -2.6232 2.4337 30 1 3.7871 -4.5808 2.4147 31 1 2.2264 -5.3970 2.6725 32 1 1.7756 -3.9204 4.6134 33 1 3.3364 -3.1046 4.3549 34 1 5.3659 -4.3928 4.7994 35 1 2.5052 -4.2766 6.8718 36 1 5.6327 -4.3846 6.6658 37 1 4.6617 -3.6322 8.0415 38 1 3.5855 -5.8809 8.5129 39 1 4.5558 -6.6344 7.1375 40 1 3.3514 -2.7756 -1.8281 41 1 3.3061 -3.4433 -4.1978 42 1 1.1581 -3.9309 -5.2986 43 1 -0.9440 -3.7562 -4.0283 44 1 -0.8980 -3.0948 -1.6568 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434415536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:49 Heat of formation + Delta-G solvation = -55.269577 kcal Electronic energy + Delta-G solvation = -24257.418408 eV Core-core repulsion = 20753.639638 eV Total energy + Delta-G solvation = -3503.778770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.33685 -38.89956 -37.67661 -35.44228 -34.29516 -33.63078 -31.19277 -30.87182 -29.92385 -27.59038 -25.88031 -23.82744 -22.75596 -21.85090 -21.56673 -20.89307 -20.50157 -19.20198 -17.00636 -16.75470 -16.24393 -16.06184 -15.77468 -15.50358 -15.10459 -14.50626 -14.23240 -14.16475 -13.83761 -13.68153 -12.91414 -12.81896 -12.65281 -12.42335 -12.23409 -11.96350 -11.72457 -11.63683 -11.55320 -11.14312 -11.08006 -11.06542 -10.96169 -10.74659 -10.39562 -10.36031 -10.26502 -10.06701 -9.90990 -9.43474 -8.78048 -8.55571 -8.26608 -7.93353 -7.60037 -6.28545 -4.33388 2.38740 2.41773 3.19332 3.26990 3.28369 3.49757 3.76658 3.94388 4.27842 4.29379 4.50026 4.68365 4.71410 4.84983 4.93612 5.08293 5.09762 5.29234 5.35803 5.42671 5.66394 5.69284 5.73317 5.80526 5.81150 5.88746 5.90797 5.91955 6.14597 6.24074 6.25191 6.44232 6.52449 6.61734 6.88671 6.99051 7.18626 7.28574 7.38117 7.46129 7.50562 7.62679 7.76970 7.97053 8.08779 8.43551 8.71262 9.28225 9.33983 10.80177 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003703 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.257780 B = 7559.600146 C = 8916.247275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.048 3.952 10 H 0.091 0.909 11 C 0.526 3.474 12 O -0.568 6.568 13 N -0.731 5.731 14 C 0.125 3.875 15 C -0.159 4.159 16 C 0.140 3.860 17 H 0.104 0.896 18 O -0.558 6.558 19 C -0.190 4.190 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.011 4.011 23 C -0.085 4.085 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.267 0.733 29 H 0.404 0.596 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.374 0.626 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -5.808 10.042 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.109 0.891 11 C 0.316 3.684 12 O -0.447 6.447 13 N -0.384 5.384 14 C 0.001 3.999 15 C -0.197 4.197 16 C 0.081 3.919 17 H 0.122 0.878 18 O -0.364 6.364 19 C -0.209 4.209 20 C -0.215 4.215 21 C -0.209 4.209 22 C -0.012 4.012 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.222 0.778 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.806 -7.003 9.511 12.409 hybrid contribution 0.294 2.052 0.356 2.104 sum 4.100 -4.950 9.866 11.776 Atomic orbital electron populations 1.69881 1.06014 1.27420 1.48281 1.24952 0.94878 0.99418 0.93715 0.86510 0.79827 0.82724 0.78545 1.20302 1.21070 1.19665 1.20682 0.93458 0.88667 1.52318 0.91994 1.18137 0.99780 0.91833 0.87574 0.89081 1.21597 0.78050 0.87103 0.81658 1.90584 1.51002 1.32180 1.70973 1.45923 1.60952 1.23284 1.08244 1.21085 0.98130 0.91520 0.89173 1.22463 1.02154 0.99572 0.95536 1.21347 0.82327 0.99110 0.89156 0.87812 1.86605 1.22037 1.40202 1.87547 1.23179 0.97987 1.05017 0.94673 1.22954 0.96703 0.98707 1.03185 1.22918 1.03985 0.94148 0.99889 1.20064 0.92101 0.91880 0.97196 1.20836 0.98348 0.97858 0.93242 1.20961 0.97055 1.01822 0.95419 1.20798 0.93057 1.03976 0.98882 1.20901 0.97229 1.02032 0.94862 1.21003 0.97818 1.00357 0.94704 0.92340 0.76099 0.91693 0.92543 0.90346 0.90732 0.77777 0.87144 0.88232 0.88904 0.89047 0.88433 0.87095 0.87570 0.87700 0.87545 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.07 12.78 55.43 0.71 -22.37 16 2 C 0.08 1.89 5.45 -17.82 -0.10 1.80 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.51 -12.84 7.46 -34.44 -0.26 -13.09 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.05 1.15 2.44 -94.08 -0.23 0.92 16 10 H 0.09 2.30 7.00 -51.93 -0.36 1.94 16 11 C 0.53 11.90 7.04 -10.99 -0.08 11.82 16 12 O -0.57 -14.20 15.42 5.55 0.09 -14.11 16 13 N -0.73 -13.52 5.46 -60.29 -0.33 -13.85 16 14 C 0.13 1.94 5.57 -4.04 -0.02 1.91 16 15 C -0.16 -1.78 4.99 -26.73 -0.13 -1.91 16 16 C 0.14 1.42 3.33 -26.73 -0.09 1.33 16 17 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 18 O -0.56 -6.18 12.03 -35.23 -0.42 -6.60 16 19 C -0.19 -1.64 5.71 -90.62 -0.52 -2.15 16 20 C -0.18 -1.41 9.74 -26.69 -0.26 -1.67 16 21 C -0.17 -1.41 10.19 -26.69 -0.27 -1.69 16 22 C -0.01 -0.27 4.30 -104.63 -0.45 -0.72 16 23 C -0.08 -1.94 8.31 -39.58 -0.33 -2.27 16 24 C -0.13 -2.70 10.05 -39.58 -0.40 -3.10 16 25 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 26 C -0.13 -2.59 10.05 -39.59 -0.40 -2.99 16 27 C -0.12 -2.67 9.67 -39.58 -0.38 -3.06 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.40 7.07 8.36 -40.82 -0.34 6.73 16 30 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.37 3.15 7.56 45.56 0.34 3.49 16 35 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.10 0.75 6.37 -51.93 -0.33 0.42 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 2.57 7.89 -52.49 -0.41 2.16 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 44 H 0.11 2.38 7.96 -52.48 -0.42 1.96 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -29.80 369.27 -9.85 -39.65 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -6.12 Total: 14.93 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -4.31 Total: -18.09 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.38 Total: -36.21 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.34 Total: -20.72 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.80 -9.85 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434415536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.616 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds