Wall clock time and date at job start Tue Mar 31 2020 08:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46954 * 269.99905 * 3 2 1 5 5 H 1.48493 * 109.47263 * 30.00255 * 3 2 1 6 6 H 1.48501 * 109.46789 * 150.00137 * 3 2 1 7 7 C 1.37881 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00044 * 185.10412 * 7 2 1 9 9 C 1.50705 * 119.99948 * 5.10747 * 7 2 1 10 10 H 1.09000 * 109.47038 * 335.05041 * 9 7 2 11 11 C 1.50699 * 109.46723 * 215.05262 * 9 7 2 12 12 O 1.21286 * 119.99731 * 239.99530 * 11 9 7 13 13 N 1.34780 * 120.00401 * 60.00173 * 11 9 7 14 14 C 1.46491 * 120.00079 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47158 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.01619 * 305.69579 * 15 14 13 17 17 C 1.53869 * 110.03206 * 67.08833 * 15 14 13 18 18 C 1.54270 * 106.59909 * 119.28994 * 17 15 14 19 19 C 1.54889 * 104.19511 * 23.60696 * 18 17 15 20 20 H 1.08999 * 110.75480 * 80.37286 * 19 18 17 21 21 O 1.42905 * 110.75877 * 203.56153 * 19 18 17 22 22 C 1.54269 * 110.03421 * 184.31041 * 15 14 13 23 23 C 1.50695 * 109.47193 * 95.05130 * 9 7 2 24 24 C 1.38227 * 120.00401 * 53.93803 * 23 9 7 25 25 C 1.38239 * 120.00429 * 180.21029 * 24 23 9 26 26 C 1.38235 * 119.99857 * 359.53576 * 25 24 23 27 27 C 1.38241 * 119.99477 * 0.27756 * 26 25 24 28 28 C 1.38234 * 120.00414 * 359.95218 * 27 26 25 29 29 H 0.96994 * 119.99851 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99764 * 359.97438 * 13 11 9 31 31 H 1.09006 * 109.47346 * 299.99561 * 14 13 11 32 32 H 1.09000 * 109.47293 * 59.99660 * 14 13 11 33 33 H 1.08999 * 110.03447 * 238.56723 * 17 15 14 34 34 H 1.08994 * 110.03666 * 359.95714 * 17 15 14 35 35 H 1.08999 * 110.49197 * 142.28739 * 18 17 15 36 36 H 1.09004 * 110.48378 * 264.93282 * 18 17 15 37 37 H 0.96695 * 113.99894 * 298.55071 * 21 19 18 38 38 H 1.08998 * 110.48082 * 335.77982 * 22 15 14 39 39 H 1.08994 * 110.48837 * 98.42219 * 22 15 14 40 40 H 1.08007 * 119.99600 * 0.02562 * 24 23 9 41 41 H 1.07997 * 120.00074 * 179.80843 * 25 24 23 42 42 H 1.07993 * 119.99898 * 180.24935 * 26 25 24 43 43 H 1.08002 * 119.99322 * 179.97438 * 27 26 25 44 44 H 1.07997 * 119.99847 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0837 9 6 1.2555 -2.4967 -0.1151 10 1 0.2362 -2.3630 0.2472 11 6 1.9483 -3.5495 0.7112 12 8 2.3737 -4.5538 0.1808 13 7 2.0950 -3.3750 2.0396 14 6 2.7679 -4.3987 2.8429 15 6 2.8015 -3.9573 4.3074 16 1 3.2528 -2.9684 4.3888 17 6 1.3751 -3.9347 4.8840 18 6 1.3570 -4.9391 6.0547 19 6 2.8388 -5.0358 6.4952 20 1 3.1089 -4.1921 7.1302 21 8 3.0880 -6.2726 7.1663 22 6 3.6016 -4.9740 5.1477 23 6 1.2231 -2.9312 -1.5577 24 6 2.4008 -3.0430 -2.2725 25 6 2.3707 -3.4373 -3.5971 26 6 1.1635 -3.7292 -4.2041 27 6 -0.0140 -3.6211 -3.4880 28 6 0.0157 -3.2222 -2.1648 29 1 -0.4849 0.8400 0.0004 30 1 1.7550 -2.5717 2.4637 31 1 2.2257 -5.3407 2.7594 32 1 3.7872 -4.5328 2.4807 33 1 1.1344 -2.9351 5.2460 34 1 0.6588 -4.2374 4.1203 35 1 0.7402 -4.5627 6.8709 36 1 0.9948 -5.9106 5.7183 37 1 2.5727 -6.3916 7.9758 38 1 3.6024 -5.9511 4.6647 39 1 4.6218 -4.6227 5.3017 40 1 3.3444 -2.8193 -1.7970 41 1 3.2906 -3.5217 -4.1565 42 1 1.1403 -4.0412 -5.2377 43 1 -0.9572 -3.8488 -3.9624 44 1 -0.9042 -3.1382 -1.6054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449028494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:05 Heat of formation + Delta-G solvation = -87.367484 kcal Electronic energy + Delta-G solvation = -24598.530999 eV Core-core repulsion = 21093.360359 eV Total energy + Delta-G solvation = -3505.170639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.43672 -38.74726 -37.63155 -35.81536 -33.64123 -33.31291 -31.09256 -29.93221 -29.51797 -28.26879 -27.14346 -24.49599 -23.46925 -21.59530 -21.14207 -20.62002 -19.88418 -19.10687 -17.47927 -16.74816 -16.16195 -16.10621 -15.76916 -15.25233 -14.64427 -14.44628 -14.24786 -14.06571 -13.78810 -13.68043 -13.10322 -12.65287 -12.57479 -12.41658 -12.22215 -12.18821 -11.80838 -11.65644 -11.47415 -11.21445 -11.07441 -11.02416 -10.75949 -10.75183 -10.45356 -10.39691 -10.26525 -10.06857 -9.97413 -9.43280 -8.79527 -8.57032 -8.27721 -7.94212 -7.60759 -6.28656 -4.33817 2.37879 2.41010 3.19209 3.26825 3.28380 3.75417 3.82429 4.25882 4.28527 4.44502 4.51157 4.82994 4.85597 5.08795 5.12026 5.19968 5.35622 5.46328 5.52135 5.63658 5.72603 5.72831 5.79611 5.89281 5.90785 5.95456 6.06812 6.09346 6.18461 6.23728 6.35942 6.43504 6.51482 6.60917 6.87865 6.98215 7.17938 7.27926 7.37304 7.44946 7.45439 7.62360 7.76314 7.96269 8.08175 8.43131 8.71041 9.27507 9.33400 10.79988 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.004064 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.385626 B = 6887.888052 C = 8205.580757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.048 3.952 10 H 0.092 0.908 11 C 0.527 3.473 12 O -0.569 6.569 13 N -0.729 5.729 14 C 0.130 3.870 15 C -0.102 4.102 16 H 0.083 0.917 17 C -0.121 4.121 18 C -0.156 4.156 19 C 0.095 3.905 20 H 0.063 0.937 21 O -0.566 6.566 22 C -0.108 4.108 23 C -0.011 4.011 24 C -0.085 4.085 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.121 4.121 29 H 0.267 0.733 30 H 0.405 0.595 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.376 0.624 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -5.860 9.662 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.110 0.890 11 C 0.316 3.684 12 O -0.449 6.449 13 N -0.382 5.382 14 C 0.005 3.995 15 C -0.121 4.121 16 H 0.101 0.899 17 C -0.159 4.159 18 C -0.194 4.194 19 C 0.037 3.963 20 H 0.081 0.919 21 O -0.371 6.371 22 C -0.146 4.146 23 C -0.012 4.012 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.139 4.139 29 H 0.077 0.923 30 H 0.240 0.760 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.223 0.777 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.983 -6.529 8.782 11.121 hybrid contribution -0.164 1.559 0.561 1.665 sum 1.819 -4.969 9.344 10.738 Atomic orbital electron populations 1.69878 1.05998 1.27419 1.48336 1.24954 0.94889 0.99419 0.93717 0.86504 0.79835 0.82711 0.78535 1.20321 1.21059 1.19648 1.20687 0.93261 0.88570 1.52555 0.91994 1.18141 0.99802 0.91903 0.87501 0.89021 1.21614 0.78021 0.87040 0.81711 1.90581 1.51189 1.31131 1.71974 1.45913 1.60933 1.23055 1.08289 1.21244 0.97682 0.91889 0.88648 1.21959 0.95972 0.99763 0.94402 0.89877 1.22162 0.96827 0.99386 0.97542 1.23062 0.96980 1.00648 0.98697 1.22883 0.94257 0.85766 0.93425 0.91862 1.86501 1.68850 1.39269 1.42492 1.22293 0.98580 1.00234 0.93476 1.20055 0.92082 0.91822 0.97235 1.20830 0.98348 0.97864 0.93252 1.20963 0.97044 1.01753 0.95500 1.20799 0.93070 1.03885 0.98959 1.20904 0.97246 1.01939 0.94929 1.21001 0.97812 1.00238 0.94839 0.92339 0.75992 0.92244 0.92281 0.91277 0.90630 0.91621 0.90722 0.77715 0.90212 0.90907 0.87112 0.87580 0.87702 0.87550 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.98 12.77 55.43 0.71 -22.27 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 3 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.51 -12.76 7.47 -34.44 -0.26 -13.01 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.15 16 9 C 0.05 1.13 2.45 -94.08 -0.23 0.90 16 10 H 0.09 2.30 6.99 -51.93 -0.36 1.94 16 11 C 0.53 11.75 7.04 -10.98 -0.08 11.68 16 12 O -0.57 -14.04 15.42 5.55 0.09 -13.95 16 13 N -0.73 -13.32 5.22 -60.30 -0.31 -13.63 16 14 C 0.13 1.99 4.69 -4.05 -0.02 1.97 16 15 C -0.10 -1.21 2.97 -89.50 -0.27 -1.47 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 17 C -0.12 -1.34 6.15 -25.61 -0.16 -1.50 16 18 C -0.16 -1.48 6.55 -25.07 -0.16 -1.64 16 19 C 0.10 0.93 4.27 -24.70 -0.11 0.82 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 O -0.57 -5.63 13.46 -35.23 -0.47 -6.10 16 22 C -0.11 -1.18 6.10 -25.03 -0.15 -1.33 16 23 C -0.01 -0.26 4.30 -104.63 -0.45 -0.71 16 24 C -0.08 -1.93 8.31 -39.59 -0.33 -2.26 16 25 C -0.13 -2.69 10.05 -39.58 -0.40 -3.09 16 26 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 27 C -0.13 -2.58 10.05 -39.58 -0.40 -2.97 16 28 C -0.12 -2.66 9.67 -39.58 -0.38 -3.04 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.41 7.07 8.21 -40.82 -0.34 6.73 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.94 7.59 -51.93 -0.39 0.54 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.38 2.08 9.11 45.56 0.42 2.50 16 38 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.11 2.55 7.89 -52.48 -0.41 2.13 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.11 2.36 7.96 -52.49 -0.42 1.95 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -29.88 364.34 -9.52 -39.40 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.11 Total: 13.32 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -3.88 Total: -17.08 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.39 Total: -35.90 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.39 Total: -20.05 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.88 -9.52 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449028494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.965 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds