Wall clock time and date at job start Tue Mar 31 2020 08:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99761 * 2 1 4 4 H 1.48498 * 109.46750 * 270.00083 * 3 2 1 5 5 H 1.48497 * 109.46959 * 29.99935 * 3 2 1 6 6 H 1.48495 * 109.46869 * 150.00248 * 3 2 1 7 7 C 1.37876 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 181.97229 * 7 2 1 9 9 C 1.50694 * 119.99938 * 1.96412 * 7 2 1 10 10 H 1.09004 * 109.47129 * 175.33865 * 9 7 2 11 11 C 1.50700 * 109.47284 * 55.33856 * 9 7 2 12 12 O 1.21278 * 119.99830 * 240.00165 * 11 9 7 13 13 N 1.34774 * 119.99932 * 59.99356 * 11 9 7 14 14 C 1.46501 * 119.99676 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46945 * 180.02562 * 14 13 11 16 16 H 1.09001 * 110.67364 * 51.76217 * 15 14 13 17 17 C 1.54892 * 110.75480 * 288.32638 * 15 14 13 18 18 C 1.54269 * 104.19511 * 203.74261 * 17 15 14 19 19 C 1.53878 * 106.59908 * 23.61069 * 18 17 15 20 20 H 1.09000 * 110.03096 * 240.71726 * 19 18 17 21 21 O 1.42896 * 110.07518 * 119.30858 * 19 18 17 22 22 C 1.54269 * 106.59887 * 359.97438 * 19 18 17 23 23 C 1.50700 * 109.47406 * 295.33759 * 9 7 2 24 24 C 1.38235 * 120.00319 * 167.22468 * 23 9 7 25 25 C 1.38239 * 119.99899 * 179.97438 * 24 23 9 26 26 C 1.38226 * 119.99968 * 0.02562 * 25 24 23 27 27 C 1.38238 * 120.00409 * 0.06588 * 26 25 24 28 28 C 1.38231 * 119.99488 * 359.88865 * 27 26 25 29 29 H 0.97003 * 120.00145 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00128 * 0.02562 * 13 11 9 31 31 H 1.09007 * 109.47160 * 299.99872 * 14 13 11 32 32 H 1.08996 * 109.47422 * 60.00239 * 14 13 11 33 33 H 1.08998 * 110.48314 * 322.42019 * 17 15 14 34 34 H 1.08996 * 110.48093 * 85.06842 * 17 15 14 35 35 H 1.08998 * 110.03256 * 264.32655 * 18 17 15 36 36 H 1.08994 * 110.03237 * 142.89540 * 18 17 15 37 37 H 0.96700 * 114.00124 * 62.80305 * 21 19 18 38 38 H 1.08995 * 110.48839 * 217.70801 * 22 19 18 39 39 H 1.09004 * 110.48202 * 95.06898 * 22 19 18 40 40 H 1.08002 * 120.00242 * 359.97438 * 24 23 9 41 41 H 1.07999 * 119.99677 * 179.72119 * 25 24 23 42 42 H 1.08001 * 119.99797 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.00051 * 179.97438 * 27 26 25 44 44 H 1.08008 * 119.99445 * 180.10906 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0317 9 6 1.2518 -2.4987 -0.0458 10 1 1.9596 -3.3241 -0.1229 11 6 0.3359 -2.5089 -1.2426 12 8 -0.8611 -2.6289 -1.0890 13 7 0.8471 -2.3846 -2.4834 14 6 -0.0433 -2.3940 -3.6467 15 6 0.7846 -2.2389 -4.9239 16 1 1.5935 -2.9691 -4.9492 17 6 1.3372 -0.7973 -5.0482 18 6 1.5842 -0.6158 -6.5601 19 6 0.6621 -1.6160 -7.2794 20 1 1.2565 -2.3173 -7.8650 21 8 -0.2497 -0.9183 -8.1300 22 6 -0.1126 -2.3708 -6.1794 23 6 0.4363 -2.6521 1.2121 24 6 -0.5367 -3.6309 1.2900 25 6 -1.2844 -3.7719 2.4442 26 6 -1.0594 -2.9339 3.5201 27 6 -0.0876 -1.9538 3.4416 28 6 0.6606 -1.8134 2.2878 29 1 -0.4850 0.8401 0.0004 30 1 1.8045 -2.2889 -2.6062 31 1 -0.5882 -3.3376 -3.6796 32 1 -0.7508 -1.5685 -3.5695 33 1 0.6024 -0.0751 -4.6923 34 1 2.2707 -0.6976 -4.4945 35 1 2.6260 -0.8317 -6.7968 36 1 1.3362 0.4025 -6.8594 37 1 0.1773 -0.4236 -8.8428 38 1 -0.2373 -3.4189 -6.4513 39 1 -1.0817 -1.9028 -6.0058 40 1 -0.7129 -4.2855 0.4492 41 1 -2.0477 -4.5337 2.5034 42 1 -1.6438 -3.0438 4.4217 43 1 0.0879 -1.2988 4.2822 44 1 1.4211 -1.0488 2.2271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449028512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:11 Heat of formation + Delta-G solvation = -78.807137 kcal Electronic energy + Delta-G solvation = -25151.044469 eV Core-core repulsion = 21646.245034 eV Total energy + Delta-G solvation = -3504.799435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.22868 -38.64766 -37.33057 -35.59225 -33.57638 -33.07662 -30.79099 -29.63795 -29.39290 -28.15892 -27.04245 -24.38085 -23.39878 -21.23320 -20.72434 -20.31538 -20.12998 -18.99690 -17.23815 -16.73324 -16.01542 -15.92372 -15.21294 -15.12519 -14.72970 -14.43995 -14.16992 -13.66460 -13.55547 -13.23295 -13.13942 -12.53718 -12.38478 -12.26180 -12.12624 -12.01569 -11.69837 -11.58044 -11.26835 -11.05181 -10.95551 -10.76698 -10.65005 -10.54057 -10.43676 -10.39298 -10.01464 -10.00879 -9.63350 -9.33927 -8.69292 -8.25319 -7.91220 -7.65020 -7.35731 -6.11126 -4.27570 2.58633 2.65258 3.19392 3.29474 3.29985 3.98365 4.20353 4.32580 4.49112 4.57152 4.60322 4.92134 5.06500 5.16592 5.26016 5.39144 5.41885 5.53856 5.64231 5.73420 5.83648 5.89009 5.99685 6.01226 6.09210 6.12490 6.20757 6.29010 6.31100 6.44344 6.54808 6.65554 6.71747 6.85419 6.95087 7.17385 7.25472 7.53597 7.57225 7.61786 7.68528 7.71072 7.83390 8.20416 8.31178 8.65486 8.86044 9.38856 9.76385 10.89164 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.004366 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.785279 B = 6411.808463 C = 7626.889169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.075 3.925 3 Si 0.884 3.116 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.056 3.944 10 H 0.056 0.944 11 C 0.550 3.450 12 O -0.549 6.549 13 N -0.735 5.735 14 C 0.137 3.863 15 C -0.100 4.100 16 H 0.081 0.919 17 C -0.115 4.115 18 C -0.158 4.158 19 C 0.099 3.901 20 H 0.056 0.944 21 O -0.567 6.567 22 C -0.110 4.110 23 C -0.014 4.014 24 C -0.100 4.100 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.148 4.148 28 C -0.065 4.065 29 H 0.264 0.736 30 H 0.394 0.606 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.374 0.626 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -3.561 -9.653 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.133 4.133 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.034 3.966 10 H 0.074 0.926 11 C 0.339 3.661 12 O -0.425 6.425 13 N -0.388 5.388 14 C 0.012 3.988 15 C -0.119 4.119 16 H 0.099 0.901 17 C -0.153 4.153 18 C -0.195 4.195 19 C 0.041 3.959 20 H 0.074 0.926 21 O -0.373 6.373 22 C -0.148 4.148 23 C -0.015 4.015 24 C -0.118 4.118 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.083 4.083 29 H 0.075 0.925 30 H 0.228 0.772 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.221 0.779 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.587 -3.789 -9.120 10.209 hybrid contribution 1.115 1.606 -0.534 2.027 sum 3.702 -2.182 -9.655 10.568 Atomic orbital electron populations 1.70078 1.05395 1.26880 1.44929 1.25043 0.94778 0.99072 0.94385 0.86707 0.80052 0.83806 0.78280 1.20566 1.21173 1.19647 1.20675 0.92837 0.88758 1.55493 0.91600 1.17886 0.92764 0.98092 0.87815 0.92644 1.20981 0.89115 0.72323 0.83716 1.90535 1.16719 1.49610 1.85668 1.45766 1.09915 1.77707 1.05444 1.21016 0.92751 1.01088 0.83920 1.22316 0.97992 0.97595 0.94008 0.90059 1.22361 1.01834 0.96534 0.94553 1.22916 0.99565 0.99911 0.97147 1.22507 0.89995 0.92501 0.90926 0.92627 1.86562 1.36937 1.68515 1.45261 1.22318 0.99757 0.99837 0.92843 1.19822 0.94556 0.92164 0.94914 1.20975 0.95972 0.98876 0.96011 1.20819 1.00589 1.00419 0.94483 1.20764 0.99646 0.97814 0.98122 1.20986 0.98274 0.99035 0.98361 1.21144 0.98482 0.97244 0.91429 0.92546 0.77232 0.92862 0.92322 0.90988 0.91045 0.91553 0.91110 0.77934 0.90999 0.90038 0.87520 0.88135 0.88253 0.88087 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.95 10.89 55.43 0.60 -22.34 16 2 C 0.08 1.89 3.99 -17.82 -0.07 1.82 16 3 Si 0.88 19.72 29.54 -169.99 -5.02 14.70 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.03 7.12 -34.44 -0.25 -13.28 16 8 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 10 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.55 12.94 5.45 -10.99 -0.06 12.88 16 12 O -0.55 -14.72 13.95 5.56 0.08 -14.64 16 13 N -0.74 -14.27 5.38 -60.29 -0.32 -14.59 16 14 C 0.14 2.34 5.11 -4.04 -0.02 2.32 16 15 C -0.10 -1.30 2.91 -88.64 -0.26 -1.56 16 16 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.12 -1.53 6.20 -25.07 -0.16 -1.69 16 18 C -0.16 -1.68 6.61 -25.61 -0.17 -1.85 16 19 C 0.10 1.06 4.26 -25.61 -0.11 0.95 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 21 O -0.57 -6.30 13.22 -35.23 -0.47 -6.77 16 22 C -0.11 -1.32 6.01 -25.08 -0.15 -1.47 16 23 C -0.01 -0.33 4.52 -104.62 -0.47 -0.80 16 24 C -0.10 -2.30 8.21 -39.58 -0.33 -2.63 16 25 C -0.14 -3.02 10.05 -39.59 -0.40 -3.42 16 26 C -0.15 -2.92 10.05 -39.59 -0.40 -3.32 16 27 C -0.15 -3.15 10.05 -39.58 -0.40 -3.54 16 28 C -0.07 -1.53 8.19 -39.59 -0.32 -1.86 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 6.91 8.36 -40.82 -0.34 6.57 16 31 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 32 H 0.06 1.16 7.99 -51.93 -0.41 0.75 16 33 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.75 7.96 -51.93 -0.41 0.33 16 37 H 0.37 2.46 9.11 45.56 0.42 2.88 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.11 7.98 -51.93 -0.41 0.70 16 40 H 0.11 2.43 7.01 -52.49 -0.37 2.06 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.13 3.09 6.02 -52.48 -0.32 2.77 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -30.80 355.45 -9.63 -40.42 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.04 Total: 14.26 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.82 Total: -16.40 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.28 Total: -36.93 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.39 Total: -21.41 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.80 -9.63 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449028512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.383 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds