Wall clock time and date at job start Tue Mar 31 2020 08:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48506 * 109.47387 * 263.60550 * 3 2 1 5 5 H 1.48504 * 109.47226 * 23.60189 * 3 2 1 6 6 H 1.48498 * 109.47408 * 143.60093 * 3 2 1 7 7 C 1.37872 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00084 * 352.36733 * 7 2 1 9 9 C 1.50700 * 119.99905 * 172.37365 * 7 2 1 10 10 H 1.09000 * 109.46859 * 354.38103 * 9 7 2 11 11 C 1.50703 * 109.47058 * 234.37952 * 9 7 2 12 12 O 1.21278 * 119.99508 * 261.82522 * 11 9 7 13 13 N 1.34776 * 119.99733 * 81.82638 * 11 9 7 14 14 C 1.46497 * 119.99432 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47115 * 179.97438 * 14 13 11 16 16 H 1.08997 * 110.81293 * 51.65890 * 15 14 13 17 17 C 1.54885 * 110.75344 * 288.32818 * 15 14 13 18 18 C 1.54269 * 104.19759 * 203.73857 * 17 15 14 19 19 C 1.53881 * 106.59403 * 23.61235 * 18 17 15 20 20 H 1.08997 * 110.03270 * 119.28433 * 19 18 17 21 21 O 1.42899 * 110.02952 * 240.71669 * 19 18 17 22 22 C 1.54271 * 106.59681 * 359.97438 * 19 18 17 23 23 C 1.50699 * 109.47316 * 114.37834 * 9 7 2 24 24 C 1.38244 * 119.99895 * 52.61399 * 23 9 7 25 25 C 1.38228 * 119.99822 * 179.78859 * 24 23 9 26 26 C 1.38237 * 120.00196 * 0.46613 * 25 24 23 27 27 C 1.38230 * 119.99960 * 359.76750 * 26 25 24 28 28 C 1.38237 * 120.00204 * 232.88901 * 23 9 7 29 29 H 0.97002 * 120.00028 * 359.97438 * 1 2 3 30 30 H 0.96991 * 120.00204 * 359.97438 * 13 11 9 31 31 H 1.09005 * 109.47667 * 59.99559 * 14 13 11 32 32 H 1.09007 * 109.47441 * 299.99394 * 14 13 11 33 33 H 1.09007 * 110.49151 * 85.06115 * 17 15 14 34 34 H 1.09002 * 110.49019 * 322.42042 * 17 15 14 35 35 H 1.08992 * 110.03387 * 264.32805 * 18 17 15 36 36 H 1.08996 * 110.03317 * 142.89547 * 18 17 15 37 37 H 0.96701 * 114.00138 * 297.16482 * 21 19 18 38 38 H 1.08994 * 110.48689 * 95.07354 * 22 19 18 39 39 H 1.09005 * 110.47734 * 217.71317 * 22 19 18 40 40 H 1.07996 * 119.99569 * 359.97438 * 24 23 9 41 41 H 1.08003 * 120.00255 * 180.25436 * 25 24 23 42 42 H 1.08003 * 119.99748 * 179.78909 * 26 25 24 43 43 H 1.08004 * 119.99976 * 180.02562 * 27 26 25 44 44 H 1.08000 * 120.00178 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6317 1.9686 -1.3914 5 1 1.3855 2.6879 0.5606 6 1 3.4725 1.4831 0.8308 7 6 2.0045 -1.1940 -0.0005 8 1 1.4717 -2.1252 0.1233 9 6 3.5015 -1.1996 -0.1737 10 1 3.8469 -0.1871 -0.3826 11 6 3.8710 -2.1034 -1.3218 12 8 4.2369 -3.2393 -1.1057 13 7 3.7947 -1.6492 -2.5884 14 6 4.1533 -2.5279 -3.7043 15 6 3.9795 -1.7733 -5.0240 16 1 4.5030 -0.8177 -4.9955 17 6 2.4783 -1.5675 -5.3449 18 6 2.4401 -1.3871 -6.8765 19 6 3.7061 -2.0642 -7.4305 20 1 3.4312 -2.8712 -8.1096 21 8 4.5159 -1.1044 -8.1123 22 6 4.4696 -2.6317 -6.2160 23 6 4.1516 -1.7014 1.0899 24 6 3.7529 -2.9047 1.6415 25 6 4.3522 -3.3670 2.7981 26 6 5.3434 -2.6215 3.4086 27 6 5.7387 -1.4161 2.8597 28 6 5.1425 -0.9557 1.7005 29 1 -0.4850 0.8401 0.0004 30 1 3.5017 -0.7409 -2.7611 31 1 3.5054 -3.4045 -3.6994 32 1 5.1916 -2.8430 -3.5997 33 1 2.1004 -0.6749 -4.8461 34 1 1.9014 -2.4438 -5.0494 35 1 2.4435 -0.3266 -7.1278 36 1 1.5509 -1.8656 -7.2868 37 1 4.0911 -0.7103 -8.8865 38 1 4.2145 -3.6799 -6.0609 39 1 5.5447 -2.5160 -6.3535 40 1 2.9753 -3.4848 1.1671 41 1 4.0436 -4.3090 3.2269 42 1 5.8093 -2.9812 4.3142 43 1 6.5135 -0.8338 3.3363 44 1 5.4512 -0.0137 1.2718 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449028518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:15 Heat of formation + Delta-G solvation = -84.262417 kcal Electronic energy + Delta-G solvation = -24708.324881 eV Core-core repulsion = 21203.288888 eV Total energy + Delta-G solvation = -3505.035994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.49900 -38.88983 -37.78968 -35.67461 -33.59686 -33.39544 -31.53811 -30.11660 -29.59644 -28.34250 -27.53754 -24.54698 -23.25681 -21.82972 -21.04236 -20.50846 -20.20853 -19.12765 -17.63403 -17.13725 -16.37952 -16.07486 -15.54768 -15.38501 -14.71572 -14.51179 -14.44308 -14.11946 -13.81825 -13.52680 -13.20484 -12.91683 -12.68200 -12.60857 -12.54655 -12.25357 -12.03616 -11.77036 -11.37929 -11.13802 -11.11447 -11.06099 -10.88506 -10.72706 -10.56301 -10.47393 -10.13030 -10.07094 -10.01414 -9.52029 -9.02697 -8.66909 -8.37377 -8.11918 -7.80257 -6.31854 -4.33340 2.15721 2.22850 3.08831 3.22279 3.24128 3.66591 3.90230 4.09295 4.19220 4.47663 4.49895 4.66100 4.78466 5.03948 5.14860 5.26972 5.37876 5.44806 5.55059 5.56737 5.60961 5.65780 5.72801 5.77083 5.85074 5.92366 5.98162 6.03062 6.11716 6.16870 6.19578 6.27775 6.36636 6.42435 6.44596 6.75289 6.87666 7.14340 7.18181 7.27037 7.30230 7.47444 7.61229 7.80956 8.17705 8.34677 8.72695 9.16512 9.26188 10.79573 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.004234 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.942569 B = 6611.801465 C = 7717.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.082 3.918 3 Si 0.865 3.135 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.033 3.967 10 H 0.058 0.942 11 C 0.532 3.468 12 O -0.560 6.560 13 N -0.733 5.733 14 C 0.130 3.870 15 C -0.103 4.103 16 H 0.083 0.917 17 C -0.119 4.119 18 C -0.157 4.157 19 C 0.099 3.901 20 H 0.056 0.944 21 O -0.567 6.567 22 C -0.110 4.110 23 C -0.031 4.031 24 C -0.069 4.069 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.131 4.131 28 C -0.134 4.134 29 H 0.269 0.731 30 H 0.398 0.602 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.375 0.625 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 -0.975 -10.470 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.122 4.122 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.541 4.541 8 H 0.101 0.899 9 C 0.011 3.989 10 H 0.076 0.924 11 C 0.321 3.679 12 O -0.439 6.439 13 N -0.385 5.385 14 C 0.006 3.994 15 C -0.121 4.121 16 H 0.102 0.898 17 C -0.156 4.156 18 C -0.195 4.195 19 C 0.040 3.960 20 H 0.074 0.926 21 O -0.373 6.373 22 C -0.147 4.147 23 C -0.032 4.032 24 C -0.087 4.087 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.152 4.152 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.222 0.778 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.628 -1.845 -9.842 12.588 hybrid contribution -0.411 1.591 -0.508 1.720 sum 7.216 -0.254 -10.351 12.620 Atomic orbital electron populations 1.69870 1.06229 1.27500 1.48025 1.25039 0.94763 0.98716 0.93711 0.87016 0.80823 0.83804 0.79191 1.19703 1.20938 1.18427 1.20531 0.86616 0.95592 1.51403 0.89859 1.18340 0.98317 0.94565 0.87700 0.92378 1.21428 0.73924 0.88676 0.83913 1.90567 1.47875 1.20364 1.85071 1.45935 1.70177 1.16660 1.05738 1.21195 1.00267 0.93379 0.84535 1.22362 0.96645 0.99485 0.93637 0.89828 1.22411 0.95940 1.02909 0.94384 1.22927 0.97958 1.01364 0.97243 1.22471 0.90081 0.89960 0.93466 0.92577 1.86552 1.45326 1.59556 1.45831 1.22338 1.00861 0.99206 0.92339 1.19998 0.92645 0.93729 0.96839 1.20925 0.98233 0.95464 0.94090 1.21056 0.97642 0.99631 0.96655 1.20876 0.99153 0.95879 1.00132 1.20881 1.00545 0.96743 0.96788 1.21007 0.97455 0.99861 0.96871 0.92102 0.76819 0.91901 0.92180 0.90940 0.90874 0.90952 0.91405 0.77848 0.89979 0.90357 0.86143 0.87103 0.87346 0.87272 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 13.96 55.43 0.77 -24.12 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 19.49 26.84 -169.99 -4.56 14.93 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.70 6.96 56.52 0.39 -5.30 16 7 C -0.50 -13.22 8.24 -34.44 -0.28 -13.50 16 8 H 0.08 2.44 7.72 -52.49 -0.40 2.04 16 9 C 0.03 0.75 2.20 -94.07 -0.21 0.54 16 10 H 0.06 1.28 4.73 -51.93 -0.25 1.03 16 11 C 0.53 11.74 6.94 -10.98 -0.08 11.67 16 12 O -0.56 -13.59 15.20 5.56 0.08 -13.50 16 13 N -0.73 -13.42 5.48 -60.29 -0.33 -13.75 16 14 C 0.13 2.00 5.11 -4.04 -0.02 1.98 16 15 C -0.10 -1.27 2.91 -88.64 -0.26 -1.53 16 16 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.12 -1.45 6.20 -25.07 -0.16 -1.60 16 18 C -0.16 -1.55 6.61 -25.61 -0.17 -1.72 16 19 C 0.10 0.96 4.26 -25.61 -0.11 0.85 16 20 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 21 O -0.57 -5.70 13.21 -35.23 -0.47 -6.17 16 22 C -0.11 -1.17 6.01 -25.09 -0.15 -1.33 16 23 C -0.03 -0.70 4.52 -104.62 -0.47 -1.17 16 24 C -0.07 -1.52 8.04 -39.58 -0.32 -1.84 16 25 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 26 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 27 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 28 C -0.13 -2.70 9.67 -39.58 -0.38 -3.08 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.40 6.85 8.47 -40.82 -0.35 6.51 16 31 H 0.06 1.02 7.99 -51.93 -0.41 0.60 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 35 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.37 2.16 9.11 45.56 0.42 2.58 16 38 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.12 2.79 7.46 -52.49 -0.39 2.40 16 41 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 42 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.11 2.04 7.96 -52.49 -0.42 1.62 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -31.33 360.82 -8.95 -40.28 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -5.99 Total: 14.06 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -3.89 Total: -17.15 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.44 Total: -37.88 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.38 Total: -19.67 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.56 Total: 14.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.33 -8.95 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449028518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.985 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds