Wall clock time and date at job start Tue Mar 31 2020 08:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86795 * 120.00170 * 2 1 4 4 H 1.48501 * 109.47263 * 267.36684 * 3 2 1 5 5 H 1.48497 * 109.47364 * 27.36691 * 3 2 1 6 6 H 1.48501 * 109.47190 * 147.36920 * 3 2 1 7 7 C 1.40232 * 119.99434 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00259 * 356.62369 * 7 2 1 9 9 C 1.41106 * 119.99351 * 176.62498 * 7 2 1 10 10 C 1.40890 * 120.10018 * 144.97285 * 9 7 2 11 11 C 1.36323 * 119.89052 * 180.22898 * 10 9 7 12 12 C 1.40013 * 120.10414 * 359.51504 * 11 10 9 13 13 C 1.47648 * 119.89229 * 180.25248 * 12 11 10 14 14 O 1.21587 * 119.99441 * 172.34988 * 13 12 11 15 15 N 1.34770 * 119.99919 * 352.35568 * 13 12 11 16 16 C 1.47022 * 125.65408 * 5.70132 * 15 13 12 17 17 C 1.54323 * 107.27416 * 178.90727 * 16 15 13 18 18 C 1.55155 * 102.94150 * 337.80622 * 17 16 15 19 19 H 1.08999 * 111.00743 * 277.42914 * 18 17 16 20 20 C 1.52995 * 111.00577 * 153.57645 * 18 17 16 21 21 C 1.52994 * 109.47499 * 174.99913 * 20 18 17 22 22 C 1.52995 * 109.47499 * 179.97438 * 21 20 18 23 23 O 1.42897 * 109.47655 * 180.02562 * 22 21 20 24 24 C 1.47426 * 125.64683 * 185.39576 * 15 13 12 25 25 C 1.40010 * 120.21366 * 0.27964 * 12 11 10 26 26 C 1.36318 * 120.10300 * 359.95775 * 25 12 11 27 27 H 0.97001 * 119.99633 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.05586 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.94458 * 179.79637 * 11 10 9 30 30 H 1.09001 * 109.87859 * 298.32882 * 16 15 13 31 31 H 1.09003 * 109.87973 * 59.33358 * 16 15 13 32 32 H 1.08998 * 110.71745 * 96.17288 * 17 16 15 33 33 H 1.09004 * 110.71563 * 219.26755 * 17 16 15 34 34 H 1.09001 * 109.47350 * 295.00768 * 20 18 17 35 35 H 1.09005 * 109.46972 * 54.99758 * 20 18 17 36 36 H 1.09003 * 109.47696 * 300.00235 * 21 20 18 37 37 H 1.09005 * 109.47135 * 59.99944 * 21 20 18 38 38 H 1.09005 * 109.47463 * 300.00348 * 22 21 20 39 39 H 1.09005 * 109.46972 * 59.99844 * 22 21 20 40 40 H 0.96701 * 114.00242 * 180.02562 * 23 22 21 41 41 H 1.09004 * 110.36438 * 323.00235 * 24 15 13 42 42 H 1.09002 * 110.36621 * 85.32284 * 24 15 13 43 43 H 1.07993 * 119.94909 * 179.97438 * 25 12 11 44 44 H 1.08009 * 120.05403 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5438 2.0142 -1.3986 5 1 1.4113 2.6681 0.6436 6 1 3.5092 1.4568 0.7550 7 6 2.0075 -1.2145 0.0005 8 1 1.4689 -2.1490 0.0560 9 6 3.4168 -1.2156 -0.0714 10 6 4.1589 -2.1929 0.6208 11 6 5.5204 -2.1871 0.5521 12 6 6.1808 -1.2182 -0.2130 13 6 7.6553 -1.2197 -0.2886 14 8 8.2252 -0.4709 -1.0586 15 7 8.3694 -2.0510 0.4958 16 6 7.8120 -3.0849 1.3799 17 6 9.0011 -3.8011 2.0542 18 6 10.1772 -3.5095 1.0852 19 1 10.1772 -4.2089 0.2492 20 6 11.5168 -3.5408 1.8235 21 6 12.6576 -3.3737 0.8178 22 6 13.9972 -3.4043 1.5562 23 8 15.0626 -3.2476 0.6169 24 6 9.8394 -2.0785 0.6046 25 6 5.4475 -0.2475 -0.9061 26 6 4.0860 -0.2424 -0.8395 27 1 -0.4850 0.8401 -0.0004 28 1 3.6501 -2.9434 1.2075 29 1 6.0902 -2.9339 1.0850 30 1 7.1793 -2.6228 2.1378 31 1 7.2299 -3.7977 0.7957 32 1 9.1984 -3.3772 3.0388 33 1 8.8147 -4.8726 2.1275 34 1 11.5506 -2.7286 2.5497 35 1 11.6247 -4.4946 2.3401 36 1 12.6239 -4.1859 0.0917 37 1 12.5496 -2.4199 0.3012 38 1 14.0307 -2.5918 2.2820 39 1 14.1053 -4.3579 2.0731 40 1 15.9434 -3.2579 1.0159 41 1 10.2953 -1.8865 -0.3667 42 1 10.1795 -1.3451 1.3358 43 1 5.9613 0.4981 -1.4946 44 1 3.5210 0.5065 -1.3749 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451384328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:44 Heat of formation + Delta-G solvation = -59.633040 kcal Electronic energy + Delta-G solvation = -24080.762708 eV Core-core repulsion = 20576.794724 eV Total energy + Delta-G solvation = -3503.967984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.04625 -38.14154 -37.38580 -36.86889 -34.39426 -33.72684 -31.36820 -30.53792 -30.11391 -28.84854 -26.52795 -25.05423 -23.68971 -21.94184 -21.32838 -21.09658 -20.35225 -19.25243 -17.75640 -17.66554 -16.83235 -16.29265 -15.78376 -15.52553 -15.11912 -14.50774 -14.37998 -14.19141 -13.68942 -13.62973 -13.35430 -12.98909 -12.95614 -12.70945 -12.61936 -12.34323 -12.23820 -12.12305 -11.86747 -11.61245 -11.36370 -11.10118 -10.85970 -10.77686 -10.75290 -10.66474 -10.31434 -10.14567 -10.03154 -9.75625 -9.26955 -9.05843 -8.35260 -7.90348 -7.71584 -7.10139 -4.71225 1.99942 2.64594 3.01904 3.14000 3.22170 3.37957 3.64858 3.80083 3.86581 4.34958 4.47345 4.50055 4.61850 4.73570 4.86882 4.98605 5.10923 5.21969 5.24715 5.29185 5.35808 5.45734 5.53826 5.58497 5.64284 5.73869 5.85184 5.88733 5.91747 5.93173 6.02862 6.04473 6.15913 6.36384 6.57192 6.67940 6.72626 6.99367 7.25099 7.25650 7.38358 7.49663 7.70514 7.91380 8.00817 8.14709 8.44591 8.58065 8.86396 9.89664 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.002715 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.914933 B =10311.361979 C =10813.568652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.079 3.921 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.240 1.240 7 C -0.429 4.429 8 H 0.096 0.904 9 C 0.107 3.893 10 C -0.215 4.215 11 C -0.084 4.084 12 C -0.273 4.273 13 C 0.586 3.414 14 O -0.568 6.568 15 N -0.626 5.626 16 C 0.097 3.903 17 C -0.132 4.132 18 C -0.102 4.102 19 H 0.085 0.915 20 C -0.103 4.103 21 C -0.124 4.124 22 C 0.075 3.925 23 O -0.576 6.576 24 C 0.113 3.887 25 C -0.013 4.013 26 C -0.248 4.248 27 H 0.290 0.710 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.378 0.622 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.602 -7.515 7.310 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.745 3.255 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.164 1.164 7 C -0.456 4.456 8 H 0.114 0.886 9 C 0.104 3.896 10 C -0.234 4.234 11 C -0.102 4.102 12 C -0.277 4.277 13 C 0.383 3.617 14 O -0.449 6.449 15 N -0.361 5.361 16 C -0.025 4.025 17 C -0.170 4.170 18 C -0.121 4.121 19 H 0.104 0.896 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.003 4.003 23 O -0.381 6.381 24 C -0.010 4.010 25 C -0.032 4.032 26 C -0.267 4.267 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.150 0.850 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.225 0.775 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.036 -6.937 6.443 21.260 hybrid contribution 0.492 0.694 0.397 0.939 sum 19.528 -6.243 6.840 21.613 Atomic orbital electron populations 1.69528 1.08079 1.30781 1.34016 1.26288 0.94996 1.01979 0.90844 0.86258 0.80481 0.78953 0.79795 1.19315 1.21971 1.16376 1.19715 0.90093 0.95291 1.40546 0.88649 1.17962 0.93670 0.90473 0.87529 1.20790 0.93037 1.03966 1.05592 1.21863 0.95381 0.96851 0.96139 1.18883 0.89983 1.05312 1.13513 1.18290 0.87484 0.77981 0.77939 1.90663 1.72773 1.42245 1.39261 1.48266 1.06250 1.36824 1.44717 1.22475 0.95923 0.90576 0.93560 1.22813 0.94286 1.01044 0.98818 1.22339 0.94056 0.97158 0.98529 0.89635 1.21422 0.92576 1.02466 0.97630 1.21577 0.92079 1.03700 0.98816 1.22223 0.87499 0.99331 0.91214 1.86500 1.17492 1.96680 1.37472 1.22134 0.81576 0.95803 1.01479 1.20412 0.93436 0.95080 0.94280 1.20804 0.93959 1.05074 1.06900 0.89946 0.87671 0.84968 0.90349 0.90417 0.90527 0.90026 0.91348 0.91250 0.91100 0.90856 0.93681 0.93766 0.77514 0.90704 0.92082 0.87640 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.53 13.92 55.56 0.77 -19.75 16 2 C 0.08 2.01 5.51 -17.31 -0.10 1.91 16 3 Si 0.92 20.57 24.37 -169.99 -4.14 16.42 16 4 H -0.27 -5.86 6.63 56.52 0.37 -5.48 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.24 -5.57 6.51 56.52 0.37 -5.20 16 7 C -0.43 -11.10 9.62 -37.75 -0.36 -11.46 16 8 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.11 2.64 5.15 -106.80 -0.55 2.09 16 10 C -0.21 -4.71 9.73 -39.27 -0.38 -5.09 16 11 C -0.08 -1.69 8.53 -39.61 -0.34 -2.02 16 12 C -0.27 -5.98 5.89 -104.73 -0.62 -6.60 16 13 C 0.59 12.27 7.80 -12.42 -0.10 12.17 16 14 O -0.57 -13.50 16.58 5.29 0.09 -13.41 16 15 N -0.63 -10.15 3.33 -177.43 -0.59 -10.75 16 16 C 0.10 1.22 4.87 -3.06 -0.01 1.21 16 17 C -0.13 -1.16 6.42 -24.90 -0.16 -1.32 16 18 C -0.10 -0.95 2.99 -88.59 -0.27 -1.21 16 19 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.10 -0.74 4.73 -26.74 -0.13 -0.86 16 21 C -0.12 -1.02 5.48 -26.74 -0.15 -1.16 16 22 C 0.07 0.53 7.05 37.16 0.26 0.79 16 23 O -0.58 -4.86 13.66 -35.23 -0.48 -5.34 16 24 C 0.11 1.48 5.88 -2.65 -0.02 1.47 16 25 C -0.01 -0.30 9.52 -39.61 -0.38 -0.68 16 26 C -0.25 -6.01 6.79 -39.27 -0.27 -6.28 16 27 H 0.29 6.73 8.29 -40.82 -0.34 6.39 16 28 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.13 2.13 2.70 -59.71 -0.16 1.96 16 30 H 0.08 1.00 6.77 -51.93 -0.35 0.65 16 31 H 0.08 0.97 6.68 -51.93 -0.35 0.63 16 32 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.47 7.96 -51.93 -0.41 0.06 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.71 7.75 -51.93 -0.40 0.30 16 38 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.38 1.39 9.12 45.56 0.42 1.80 16 41 H 0.07 1.08 7.99 -51.93 -0.41 0.67 16 42 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 43 H 0.11 2.40 7.65 -52.49 -0.40 2.00 16 44 H 0.11 2.50 4.20 -52.48 -0.22 2.28 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -31.31 348.09 -8.36 -39.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.70 Total: 4.97 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.55 Total: -17.05 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.18 Total: -30.50 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.39 Total: -18.76 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.14 Total: 16.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.31 -8.36 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451384328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.966 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds