Wall clock time and date at job start Tue Mar 31 2020 08:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48497 * 109.46986 * 270.00203 * 3 2 1 5 5 H 1.48506 * 109.46852 * 30.00114 * 3 2 1 6 6 H 1.48495 * 109.47037 * 149.99876 * 3 2 1 7 7 C 1.40224 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99756 * 175.53836 * 7 2 1 9 9 C 1.41104 * 120.00288 * 355.54478 * 7 2 1 10 10 C 1.40892 * 120.10184 * 214.78697 * 9 7 2 11 11 C 1.36315 * 119.89240 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10721 * 0.02562 * 11 10 9 13 13 C 1.47638 * 119.89748 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99852 * 7.46158 * 13 12 11 15 15 N 1.34766 * 120.00348 * 187.46537 * 13 12 11 16 16 C 1.47023 * 125.64757 * 354.30280 * 15 13 12 17 17 C 1.54376 * 107.28973 * 181.05811 * 16 15 13 18 18 C 1.55157 * 102.91804 * 22.13875 * 17 16 15 19 19 H 1.09003 * 111.00365 * 82.64498 * 18 17 16 20 20 C 1.53003 * 111.00111 * 206.45163 * 18 17 16 21 21 C 1.52999 * 109.46973 * 181.82361 * 20 18 17 22 22 C 1.52994 * 109.47098 * 180.02562 * 21 20 18 23 23 O 1.42908 * 109.47191 * 179.97438 * 22 21 20 24 24 C 1.47427 * 125.65214 * 174.26399 * 15 13 12 25 25 C 1.40007 * 120.20782 * 0.23033 * 12 11 10 26 26 C 1.36320 * 120.10853 * 359.48314 * 25 12 11 27 27 H 0.97004 * 119.99733 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.05059 * 0.04670 * 10 9 7 29 29 H 1.07998 * 119.94428 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.88236 * 300.44593 * 16 15 13 31 31 H 1.09004 * 109.88274 * 61.45399 * 16 15 13 32 32 H 1.08998 * 110.70567 * 263.79333 * 17 16 15 33 33 H 1.08999 * 110.75218 * 140.50672 * 17 16 15 34 34 H 1.08999 * 109.47231 * 61.82363 * 20 18 17 35 35 H 1.09002 * 109.47389 * 301.82252 * 20 18 17 36 36 H 1.08999 * 109.47140 * 59.99947 * 21 20 18 37 37 H 1.09002 * 109.46975 * 300.00145 * 21 20 18 38 38 H 1.08999 * 109.47177 * 59.99959 * 22 21 20 39 39 H 1.09002 * 109.47317 * 299.99925 * 22 21 20 40 40 H 0.96702 * 114.00013 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.36801 * 37.06956 * 24 15 13 42 42 H 1.08993 * 110.36656 * 274.74266 * 24 15 13 43 43 H 1.08001 * 119.94969 * 179.72081 * 25 12 11 44 44 H 1.08000 * 120.05530 * 180.25710 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6527 0.7001 6 1 3.5381 1.4401 0.7000 7 6 2.0075 -1.2144 0.0005 8 1 3.0851 -1.2159 -0.0722 9 6 1.3052 -2.4345 0.0960 10 6 1.8659 -3.5195 0.7985 11 6 1.1839 -4.6964 0.8876 12 6 -0.0716 -4.8282 0.2820 13 6 -0.8060 -6.1052 0.3809 14 8 -0.3870 -6.9934 1.0977 15 7 -1.9406 -6.2864 -0.3233 16 6 -2.6203 -5.2632 -1.1312 17 6 -3.8853 -5.9159 -1.7285 18 6 -4.1481 -7.1059 -0.7682 19 1 -4.6880 -6.7789 0.1205 20 6 -4.9019 -8.2301 -1.4816 21 6 -5.1819 -9.3637 -0.4930 22 6 -5.9351 -10.4881 -1.2065 23 8 -6.1962 -11.5473 -0.2832 24 6 -2.7055 -7.5436 -0.4119 25 6 -0.6305 -3.7546 -0.4217 26 6 0.0414 -2.5718 -0.5113 27 1 -0.4850 0.8401 -0.0004 28 1 2.8343 -3.4188 1.2658 29 1 1.6127 -5.5285 1.4262 30 1 -2.9015 -4.4196 -0.5008 31 1 -1.9617 -4.9246 -1.9311 32 1 -3.6939 -6.2721 -2.7407 33 1 -4.7226 -5.2181 -1.7160 34 1 -4.2964 -8.6078 -2.3055 35 1 -5.8450 -7.8457 -1.8702 36 1 -5.7874 -8.9860 0.3309 37 1 -4.2389 -9.7481 -0.1044 38 1 -5.3293 -10.8657 -2.0301 39 1 -6.8782 -10.1041 -1.5954 40 1 -6.6719 -12.2961 -0.6680 41 1 -2.6926 -8.0638 0.5459 42 1 -2.2979 -8.1811 -1.1963 43 1 -1.5972 -3.8623 -0.8910 44 1 -0.3924 -1.7429 -1.0508 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451384351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:47 Heat of formation + Delta-G solvation = -62.814425 kcal Electronic energy + Delta-G solvation = -24044.453717 eV Core-core repulsion = 20540.347778 eV Total energy + Delta-G solvation = -3504.105939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.89236 -37.95852 -37.22863 -36.70808 -34.28609 -33.70977 -31.13711 -30.20408 -29.50457 -28.63702 -26.42080 -25.07372 -23.59091 -21.72001 -21.40194 -20.68409 -20.25316 -19.04945 -17.62793 -17.43406 -16.61500 -16.15166 -15.71803 -15.43032 -14.89388 -14.48406 -14.32210 -14.08167 -13.53211 -13.36626 -13.27214 -12.83899 -12.67160 -12.63400 -12.41074 -12.17132 -12.00383 -11.77802 -11.47984 -11.38195 -11.25366 -11.21544 -10.94377 -10.72510 -10.67004 -10.54183 -10.52299 -10.26494 -9.95763 -9.44105 -9.25702 -8.93545 -8.21286 -7.67699 -7.37441 -6.84045 -4.59775 2.23148 2.95044 2.98787 3.03060 3.05284 3.51791 3.79957 3.85307 3.89943 4.44877 4.58560 4.60925 4.68819 4.81418 4.94741 5.04741 5.21599 5.31110 5.36914 5.43727 5.53921 5.55237 5.66133 5.70057 5.75013 5.89908 5.94442 6.00812 6.02206 6.13494 6.18936 6.25325 6.33724 6.73799 6.81590 6.91991 7.07774 7.19431 7.30131 7.51885 7.66154 7.84931 7.92179 8.12730 8.17782 8.47929 8.70623 8.80221 9.01474 10.04681 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.002640 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.923520 B =10604.812796 C =11314.610742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.451 4.451 8 H 0.081 0.919 9 C 0.124 3.876 10 C -0.227 4.227 11 C -0.033 4.033 12 C -0.266 4.266 13 C 0.585 3.415 14 O -0.572 6.572 15 N -0.625 5.625 16 C 0.099 3.901 17 C -0.132 4.132 18 C -0.102 4.102 19 H 0.085 0.915 20 C -0.103 4.103 21 C -0.124 4.124 22 C 0.075 3.925 23 O -0.576 6.576 24 C 0.113 3.887 25 C -0.107 4.107 26 C -0.168 4.168 27 H 0.282 0.718 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.378 0.622 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.128 0.872 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 -10.067 -6.669 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.148 4.148 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.121 3.879 10 C -0.247 4.247 11 C -0.052 4.052 12 C -0.270 4.270 13 C 0.382 3.618 14 O -0.454 6.454 15 N -0.360 5.360 16 C -0.024 4.024 17 C -0.170 4.170 18 C -0.121 4.121 19 H 0.103 0.897 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.002 4.002 23 O -0.381 6.381 24 C -0.010 4.010 25 C -0.126 4.126 26 C -0.187 4.187 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.224 0.776 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.104 -9.932 -5.832 16.708 hybrid contribution 0.022 0.507 -0.341 0.611 sum -12.081 -9.425 -6.173 16.520 Atomic orbital electron populations 1.69681 1.07565 1.29345 1.35352 1.26032 0.95006 1.01586 0.92183 0.86120 0.80326 0.79885 0.79315 1.19242 1.20049 1.18470 1.19742 0.95083 0.90200 1.42964 0.90111 1.17898 0.92022 0.91634 0.86356 1.20857 1.01693 0.95114 1.07021 1.20386 0.92935 0.96381 0.95481 1.18943 0.99001 0.93795 1.15251 1.18401 0.78050 0.87937 0.77365 1.90644 1.68101 1.45827 1.40799 1.48269 1.25687 1.11737 1.50336 1.22483 0.93073 0.91691 0.95131 1.22830 0.97708 0.97371 0.99075 1.22381 0.95495 0.95226 0.99014 0.89665 1.21422 1.00385 0.94400 0.97859 1.21579 1.01251 0.94347 0.99020 1.22226 0.98371 0.88123 0.91528 1.86506 1.80286 1.31141 1.40203 1.22154 0.89659 0.87558 1.01593 1.21937 0.99700 0.93422 0.97493 1.21315 0.97552 0.96458 1.03391 0.90654 0.88311 0.88154 0.90398 0.90307 0.90601 0.90088 0.91384 0.91306 0.91110 0.90829 0.93688 0.93782 0.77561 0.90799 0.92157 0.85501 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.40 10.59 55.56 0.59 -18.81 16 2 C 0.07 1.67 5.42 -17.31 -0.09 1.57 16 3 Si 0.92 17.88 29.56 -169.99 -5.03 12.86 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.44 9.03 -37.75 -0.34 -11.78 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.12 3.21 5.55 -106.80 -0.59 2.62 16 10 C -0.23 -5.61 9.73 -39.27 -0.38 -5.99 16 11 C -0.03 -0.79 9.52 -39.61 -0.38 -1.17 16 12 C -0.27 -6.23 5.89 -104.73 -0.62 -6.85 16 13 C 0.59 13.04 7.80 -12.43 -0.10 12.94 16 14 O -0.57 -14.23 16.58 5.29 0.09 -14.14 16 15 N -0.63 -11.02 3.33 -177.65 -0.59 -11.61 16 16 C 0.10 1.42 4.87 -3.04 -0.01 1.40 16 17 C -0.13 -1.34 6.42 -24.87 -0.16 -1.50 16 18 C -0.10 -1.07 3.04 -88.47 -0.27 -1.33 16 19 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.10 -0.82 4.72 -26.73 -0.13 -0.95 16 21 C -0.12 -1.11 5.46 -26.74 -0.15 -1.26 16 22 C 0.08 0.58 7.05 37.15 0.26 0.84 16 23 O -0.58 -5.16 13.66 -35.23 -0.48 -5.64 16 24 C 0.11 1.61 5.74 -2.53 -0.01 1.60 16 25 C -0.11 -2.40 8.53 -39.61 -0.34 -2.74 16 26 C -0.17 -4.15 8.61 -39.27 -0.34 -4.49 16 27 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.10 2.35 7.65 -52.49 -0.40 1.95 16 30 H 0.08 1.16 6.72 -51.93 -0.35 0.81 16 31 H 0.08 1.16 6.73 -51.93 -0.35 0.81 16 32 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.38 1.56 9.12 45.56 0.42 1.97 16 41 H 0.07 1.15 7.95 -51.93 -0.41 0.73 16 42 H 0.06 0.82 7.96 -51.93 -0.41 0.40 16 43 H 0.13 2.39 2.69 -60.19 -0.16 2.23 16 44 H 0.13 3.27 6.13 -52.49 -0.32 2.95 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.16 354.10 -9.46 -40.62 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.73 Total: 8.47 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -3.65 Total: -17.09 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.00 Total: -30.42 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.39 Total: -19.77 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.16 -9.46 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451384351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.199 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds