Wall clock time and date at job start Tue Mar 31 2020 08:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48501 * 109.46981 * 93.16842 * 3 2 1 5 5 H 1.48499 * 109.47057 * 213.16570 * 3 2 1 6 6 H 1.48494 * 109.46871 * 333.16808 * 3 2 1 7 7 C 1.39937 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00385 * 4.05302 * 7 2 1 9 9 C 1.41442 * 119.99948 * 184.05122 * 7 2 1 10 10 C 1.40782 * 120.17320 * 39.27411 * 9 7 2 11 11 C 1.37711 * 120.03833 * 179.74216 * 10 9 7 12 12 C 1.38370 * 120.41165 * 0.50509 * 11 10 9 13 13 C 1.39884 * 120.35719 * 359.76591 * 12 11 10 14 14 C 1.47883 * 120.02482 * 179.97438 * 13 12 11 15 15 O 1.21550 * 120.00307 * 353.53119 * 14 13 12 16 16 N 1.34774 * 120.00051 * 173.52595 * 14 13 12 17 17 C 1.47020 * 125.64617 * 5.08573 * 16 14 13 18 18 C 1.54343 * 107.26598 * 178.85199 * 17 16 14 19 19 C 1.55161 * 103.01606 * 338.14105 * 18 17 16 20 20 H 1.08995 * 111.03689 * 277.21524 * 19 18 17 21 21 C 1.52999 * 110.99779 * 153.38155 * 19 18 17 22 22 C 1.53003 * 109.46863 * 181.34545 * 21 19 18 23 23 C 1.53003 * 109.47305 * 179.97438 * 22 21 19 24 24 O 1.42902 * 109.47137 * 180.02562 * 23 22 21 25 25 C 1.47429 * 125.65151 * 185.39651 * 16 14 13 26 26 C 1.39025 * 119.94869 * 359.97438 * 13 12 11 27 27 H 0.96999 * 119.99522 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.98423 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.79875 * 180.23354 * 11 10 9 30 30 H 1.08008 * 119.82232 * 179.74130 * 12 11 10 31 31 H 1.08997 * 109.88520 * 298.39474 * 17 16 14 32 32 H 1.09001 * 109.88384 * 59.56255 * 17 16 14 33 33 H 1.09000 * 110.84828 * 219.67649 * 18 17 16 34 34 H 1.08999 * 110.66319 * 96.52268 * 18 17 16 35 35 H 1.08992 * 109.47602 * 301.34991 * 21 19 18 36 36 H 1.09007 * 109.47111 * 61.35443 * 21 19 18 37 37 H 1.08992 * 109.47376 * 300.00585 * 22 21 19 38 38 H 1.09005 * 109.46794 * 60.00082 * 22 21 19 39 39 H 1.08992 * 109.47128 * 300.00973 * 23 22 21 40 40 H 1.09004 * 109.46452 * 60.00157 * 23 22 21 41 41 H 0.96697 * 113.99645 * 180.02562 * 24 23 22 42 42 H 1.09000 * 110.36356 * 322.93236 * 25 16 14 43 43 H 1.08999 * 110.36604 * 85.14155 * 25 16 14 44 44 H 1.07998 * 120.20465 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.5569 2.0076 1.3979 5 1 3.5048 1.4603 -0.7659 6 1 1.4079 2.6710 -0.6319 7 6 2.0079 -1.2119 0.0005 8 1 1.4699 -2.1461 -0.0651 9 6 3.4197 -1.2135 0.0871 10 6 4.0778 -0.2996 0.9318 11 6 5.4522 -0.3071 1.0179 12 6 6.1960 -1.2026 0.2700 13 6 5.5598 -2.1143 -0.5790 14 6 6.3620 -3.0677 -1.3755 15 8 7.5746 -2.9833 -1.3838 16 7 5.7487 -4.0304 -2.0921 17 6 4.2955 -4.1819 -2.2562 18 6 4.0629 -5.3981 -3.1776 19 6 5.4123 -5.5279 -3.9324 20 1 5.4526 -4.8460 -4.7818 21 6 5.6539 -6.9710 -4.3795 22 6 7.0062 -7.0655 -5.0890 23 6 7.2481 -8.5088 -5.5355 24 8 8.5114 -8.5971 -6.1976 25 6 6.4235 -5.1096 -2.8361 26 6 4.1728 -2.1234 -0.6735 27 1 -0.4849 0.8401 -0.0004 28 1 3.5044 0.4053 1.5154 29 1 5.9530 0.3933 1.6700 30 1 7.2737 -1.1974 0.3417 31 1 3.8289 -4.3545 -1.2864 32 1 3.8789 -3.2858 -2.7161 33 1 3.2477 -5.2061 -3.8751 34 1 3.8624 -6.2935 -2.5892 35 1 5.6540 -7.6261 -3.5084 36 1 4.8624 -7.2767 -5.0639 37 1 7.0060 -6.4104 -5.9600 38 1 7.7976 -6.7598 -4.4046 39 1 7.2483 -9.1635 -4.6642 40 1 6.4566 -8.8148 -6.2197 41 1 8.7309 -9.4859 -6.5089 42 1 7.3433 -4.7401 -3.2893 43 1 6.6379 -5.9494 -2.1751 44 1 3.6773 -2.8257 -1.3273 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468973634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:34 Heat of formation + Delta-G solvation = -59.272840 kcal Electronic energy + Delta-G solvation = -24342.216023 eV Core-core repulsion = 20838.263659 eV Total energy + Delta-G solvation = -3503.952364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12067 -38.14198 -37.34805 -36.95044 -34.34672 -33.54723 -31.33064 -30.54555 -30.28187 -28.67293 -25.86593 -25.23697 -23.96527 -22.09424 -21.56105 -20.84926 -20.27141 -19.34446 -17.64539 -17.53595 -16.40112 -16.17349 -15.92201 -15.71536 -15.04899 -14.61855 -14.43702 -14.36335 -13.67637 -13.60755 -13.48606 -13.02836 -12.83130 -12.69440 -12.47718 -12.44859 -12.23631 -12.00882 -11.66896 -11.46428 -11.30781 -11.19181 -10.87448 -10.76226 -10.72597 -10.60993 -10.28467 -10.25322 -9.95819 -9.59272 -9.45073 -9.06291 -8.40189 -7.92331 -7.67403 -6.88523 -4.57217 1.86248 2.49877 3.07213 3.17465 3.25746 3.28397 3.57304 3.82468 3.95934 4.38681 4.52275 4.54321 4.64286 4.77616 4.91783 5.02567 5.14738 5.22987 5.24681 5.31012 5.36127 5.45301 5.49826 5.62100 5.72176 5.86449 5.89119 5.89662 5.91872 5.96988 6.07698 6.15967 6.20833 6.31911 6.45849 6.55188 6.72200 7.01141 7.21848 7.28420 7.35774 7.45828 7.71047 7.84718 7.89645 8.28351 8.49207 8.65183 8.75852 10.14609 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.003191 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.262788 B = 8772.876429 C = 9689.659982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.083 3.917 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.246 1.246 6 H -0.291 1.291 7 C -0.458 4.458 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.205 4.205 11 C -0.095 4.095 12 C -0.169 4.169 13 C -0.109 4.109 14 C 0.579 3.421 15 O -0.554 6.554 16 N -0.618 5.618 17 C 0.093 3.907 18 C -0.131 4.131 19 C -0.102 4.102 20 H 0.086 0.914 21 C -0.103 4.103 22 C -0.125 4.125 23 C 0.075 3.925 24 O -0.576 6.576 25 C 0.112 3.888 26 C -0.196 4.196 27 H 0.284 0.716 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.378 0.622 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -13.515 -9.028 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.169 1.169 6 H -0.219 1.219 7 C -0.488 4.488 8 H 0.110 0.890 9 C 0.080 3.920 10 C -0.224 4.224 11 C -0.114 4.114 12 C -0.189 4.189 13 C -0.112 4.112 14 C 0.372 3.628 15 O -0.433 6.433 16 N -0.352 5.352 17 C -0.029 4.029 18 C -0.169 4.169 19 C -0.121 4.121 20 H 0.105 0.895 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.003 4.003 24 O -0.382 6.382 25 C -0.011 4.011 26 C -0.215 4.215 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.869 -12.663 -8.849 16.907 hybrid contribution 0.084 0.264 0.039 0.279 sum 6.953 -12.399 -8.810 16.724 Atomic orbital electron populations 1.69601 1.07677 1.29898 1.37903 1.25994 0.94849 1.01079 0.91359 0.86430 0.80563 0.80191 0.79536 1.19545 1.16943 1.21880 1.19348 0.89400 0.95186 1.44833 0.88994 1.17781 0.94011 0.90865 0.89343 1.21456 0.94137 1.04365 1.02486 1.20634 0.94033 0.97989 0.98720 1.20553 0.98509 0.98711 1.01095 1.19429 0.93748 0.98040 1.00024 1.18496 0.87015 0.79389 0.77948 1.90679 1.14329 1.73203 1.65070 1.48308 1.07321 1.28745 1.50841 1.22606 0.81623 0.98390 1.00311 1.22824 0.97303 0.98389 0.98405 1.22379 0.95120 0.96846 0.97731 0.89524 1.21425 0.96545 0.95737 1.00395 1.21583 0.97907 0.95511 1.01213 1.22225 0.84927 0.97731 0.95390 1.86500 1.38059 1.35089 1.78502 1.22229 0.96317 0.89827 0.92729 1.22733 0.91888 1.04546 1.02294 0.90588 0.87596 0.87937 0.87334 0.89704 0.89673 0.89779 0.90475 0.91331 0.91163 0.91082 0.90865 0.93679 0.93740 0.77533 0.90568 0.91758 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.59 13.93 55.55 0.77 -20.82 16 2 C 0.08 2.13 5.51 -17.34 -0.10 2.04 16 3 Si 0.91 20.44 24.47 -169.99 -4.16 16.28 16 4 H -0.27 -5.89 6.61 56.52 0.37 -5.51 16 5 H -0.25 -5.71 6.74 56.52 0.38 -5.33 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.46 -11.75 9.60 -37.73 -0.36 -12.12 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.08 1.99 5.02 -106.87 -0.54 1.46 16 10 C -0.21 -4.78 6.96 -38.81 -0.27 -5.05 16 11 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 12 C -0.17 -3.68 9.60 -38.92 -0.37 -4.06 16 13 C -0.11 -2.38 5.87 -105.04 -0.62 -3.00 16 14 C 0.58 11.88 7.81 -12.31 -0.10 11.78 16 15 O -0.55 -12.64 16.58 5.32 0.09 -12.55 16 16 N -0.62 -10.17 3.33 -176.69 -0.59 -10.76 16 17 C 0.09 1.31 4.87 -3.05 -0.01 1.29 16 18 C -0.13 -1.32 6.42 -24.88 -0.16 -1.48 16 19 C -0.10 -1.00 3.08 -88.47 -0.27 -1.28 16 20 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.10 -0.78 4.73 -26.73 -0.13 -0.91 16 22 C -0.12 -1.06 5.43 -26.73 -0.15 -1.20 16 23 C 0.07 0.55 7.05 37.16 0.26 0.81 16 24 O -0.58 -4.99 13.66 -35.23 -0.48 -5.47 16 25 C 0.11 1.47 5.59 -2.53 -0.01 1.45 16 26 C -0.20 -4.27 8.36 -38.45 -0.32 -4.59 16 27 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 28 H 0.11 2.44 4.79 -52.49 -0.25 2.19 16 29 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 30 H 0.11 2.28 7.65 -52.48 -0.40 1.88 16 31 H 0.09 1.25 6.76 -51.93 -0.35 0.90 16 32 H 0.09 1.27 6.73 -51.93 -0.35 0.92 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.69 8.04 -51.93 -0.42 0.28 16 35 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.71 7.46 -51.93 -0.39 0.33 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.38 1.47 9.12 45.56 0.42 1.89 16 42 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 43 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 44 H 0.14 2.75 2.72 -59.06 -0.16 2.59 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -31.04 348.85 -8.36 -39.41 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.72 Total: 5.95 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.54 Total: -17.29 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.19 Total: -31.58 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.39 Total: -18.02 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.16 Total: 16.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.04 -8.36 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468973634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.865 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds