Wall clock time and date at job start Tue Mar 31 2020 08:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48500 * 109.47183 * 85.17524 * 3 2 1 5 5 H 1.48506 * 109.46879 * 325.18044 * 3 2 1 6 6 H 1.48501 * 109.47134 * 205.18097 * 3 2 1 7 7 C 1.39937 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99688 * 197.48929 * 7 2 1 9 9 C 1.41435 * 120.00197 * 17.49362 * 7 2 1 10 10 C 1.40791 * 120.17829 * 24.99275 * 9 7 2 11 11 C 1.37711 * 120.03842 * 179.70172 * 10 9 7 12 12 C 1.38372 * 120.41088 * 0.59863 * 11 10 9 13 13 C 1.39874 * 120.35890 * 359.67885 * 12 11 10 14 14 C 1.47882 * 120.02456 * 180.02562 * 13 12 11 15 15 O 1.21550 * 120.00097 * 352.15081 * 14 13 12 16 16 N 1.34779 * 120.00062 * 172.14668 * 14 13 12 17 17 C 1.47017 * 125.64572 * 5.05406 * 16 14 13 18 18 C 1.54319 * 107.27415 * 180.96508 * 17 16 14 19 19 C 1.55159 * 102.86336 * 22.52882 * 18 17 16 20 20 H 1.08997 * 111.00728 * 82.37372 * 19 18 17 21 21 C 1.53002 * 111.00204 * 206.22953 * 19 18 17 22 22 C 1.53008 * 109.46915 * 178.64552 * 21 19 18 23 23 C 1.53000 * 109.47214 * 179.97438 * 22 21 19 24 24 O 1.42894 * 109.47330 * 180.02562 * 23 22 21 25 25 C 1.47422 * 125.64610 * 185.35767 * 16 14 13 26 26 C 1.39028 * 119.95132 * 0.02562 * 13 12 11 27 27 H 0.97005 * 120.00401 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.97802 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.78995 * 180.28099 * 11 10 9 30 30 H 1.08000 * 119.81667 * 179.69673 * 12 11 10 31 31 H 1.08996 * 109.88384 * 300.50521 * 17 16 14 32 32 H 1.08999 * 109.88574 * 61.68083 * 17 16 14 33 33 H 1.09001 * 110.92858 * 264.11332 * 18 17 16 34 34 H 1.09005 * 110.59177 * 140.78245 * 18 17 16 35 35 H 1.08993 * 109.47170 * 298.64469 * 21 19 18 36 36 H 1.08997 * 109.47549 * 58.65005 * 21 19 18 37 37 H 1.08993 * 109.47134 * 299.99939 * 22 21 19 38 38 H 1.08997 * 109.46643 * 59.99898 * 22 21 19 39 39 H 1.09003 * 109.47275 * 300.00687 * 23 22 21 40 40 H 1.09004 * 109.46678 * 60.00071 * 23 22 21 41 41 H 0.96698 * 114.00153 * 180.02562 * 24 23 22 42 42 H 1.08994 * 110.37012 * 274.67092 * 25 16 14 43 43 H 1.08993 * 110.37114 * 36.89296 * 25 16 14 44 44 H 1.07999 * 120.20440 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3878 2.1053 1.3951 5 1 1.4943 2.6211 -0.7995 6 1 3.5870 1.4130 -0.5957 7 6 2.0080 -1.2119 0.0005 8 1 3.0506 -1.2333 0.2817 9 6 1.3499 -2.4086 -0.3671 10 6 0.2212 -2.3662 -1.2076 11 6 -0.4136 -3.5337 -1.5687 12 6 0.0430 -4.7530 -1.1005 13 6 1.1593 -4.8144 -0.2599 14 6 1.6414 -6.1216 0.2358 15 8 0.9890 -7.1269 0.0325 16 7 2.8042 -6.1984 0.9129 17 6 3.6365 -5.0565 1.3184 18 6 4.8744 -5.6260 2.0428 19 6 4.9546 -7.0775 1.5004 20 1 5.4531 -7.1055 0.5315 21 6 5.6542 -7.9991 2.5015 22 6 5.6841 -9.4250 1.9473 23 6 6.3841 -10.3465 2.9481 24 8 6.4126 -11.6781 2.4303 25 6 3.4551 -7.4418 1.3641 26 6 1.8153 -3.6455 0.1092 27 1 -0.4851 0.8401 0.0004 28 1 -0.1438 -1.4179 -1.5736 29 1 -1.2764 -3.4968 -2.2174 30 1 -0.4651 -5.6623 -1.3858 31 1 3.9465 -4.4927 0.4385 32 1 3.0769 -4.4119 1.9962 33 1 4.7279 -5.6255 3.1229 34 1 5.7686 -5.0638 1.7736 35 1 6.6742 -7.6512 2.6643 36 1 5.1112 -7.9880 3.4465 37 1 4.6641 -9.7729 1.7845 38 1 6.2270 -9.4361 1.0023 39 1 7.4042 -9.9984 3.1106 40 1 5.8415 -10.3354 3.8933 41 1 6.8426 -12.3180 3.0140 42 1 3.0514 -7.7534 2.3274 43 1 3.3205 -8.2307 0.6241 44 1 2.6779 -3.6882 0.7577 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468973641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:38 Heat of formation + Delta-G solvation = -62.782966 kcal Electronic energy + Delta-G solvation = -24239.589291 eV Core-core repulsion = 20735.484716 eV Total energy + Delta-G solvation = -3504.104575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.97729 -37.98440 -37.19658 -36.77815 -34.27685 -33.65813 -31.16079 -30.13732 -29.76712 -28.53798 -25.75422 -25.30853 -23.82381 -21.84214 -21.43264 -20.70707 -20.23570 -19.29049 -17.62435 -17.31212 -16.35631 -16.04697 -15.72160 -15.41211 -14.84252 -14.74897 -14.37136 -14.21113 -13.56521 -13.42680 -13.24240 -13.03237 -12.73784 -12.58036 -12.42754 -12.24597 -12.03896 -11.72925 -11.49775 -11.25507 -11.20857 -11.14776 -10.89628 -10.71167 -10.67405 -10.50560 -10.45709 -10.26424 -10.06338 -9.41197 -9.20660 -9.02757 -8.28669 -7.63113 -7.48978 -6.82889 -4.44281 2.20533 2.73459 3.03084 3.06092 3.12713 3.41235 3.82300 3.84977 3.88180 4.44259 4.59026 4.60318 4.67048 4.80989 4.95423 5.04768 5.23461 5.29164 5.37809 5.41608 5.52176 5.55811 5.60102 5.66508 5.76071 5.92962 5.94185 5.98153 6.01099 6.12519 6.20218 6.25854 6.45643 6.63499 6.80332 6.92021 7.02562 7.17873 7.30252 7.38724 7.66244 7.84807 7.89713 8.03382 8.11291 8.49937 8.78151 8.80422 8.85871 10.12829 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020337 B = 0.003117 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.467653 B = 8980.372001 C =10215.171922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.099 3.901 10 C -0.138 4.138 11 C -0.117 4.117 12 C -0.174 4.174 13 C -0.116 4.116 14 C 0.579 3.421 15 O -0.557 6.557 16 N -0.619 5.619 17 C 0.096 3.904 18 C -0.132 4.132 19 C -0.102 4.102 20 H 0.086 0.914 21 C -0.103 4.103 22 C -0.125 4.125 23 C 0.075 3.925 24 O -0.576 6.576 25 C 0.113 3.887 26 C -0.222 4.222 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.378 0.622 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.751 -9.902 6.463 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.157 4.157 11 C -0.136 4.136 12 C -0.195 4.195 13 C -0.119 4.119 14 C 0.373 3.627 15 O -0.437 6.437 16 N -0.354 5.354 17 C -0.026 4.026 18 C -0.170 4.170 19 C -0.121 4.121 20 H 0.104 0.896 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.003 4.003 24 O -0.381 6.381 25 C -0.010 4.010 26 C -0.241 4.241 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.798 -9.965 5.827 16.506 hybrid contribution 0.500 0.664 0.558 1.001 sum 12.298 -9.301 6.384 16.689 Atomic orbital electron populations 1.69807 1.07590 1.29303 1.35444 1.25890 0.94715 1.01317 0.92248 0.86322 0.80743 0.80768 0.79040 1.19598 1.20067 1.18413 1.19495 0.97937 0.90998 1.41018 0.90344 1.17580 0.91504 0.91983 0.89253 1.21577 0.98396 0.96941 0.98835 1.20690 0.99345 0.92925 1.00593 1.20471 0.98484 0.96892 1.03613 1.19249 0.99073 0.90922 1.02649 1.18630 0.78392 0.89764 0.75926 1.90662 1.55858 1.38245 1.58937 1.48311 1.22542 1.07409 1.57121 1.22566 0.91020 0.89332 0.99688 1.22835 0.98255 0.95380 1.00516 1.22384 0.95156 0.94851 0.99690 0.89575 1.21424 1.00921 0.93309 0.98427 1.21583 1.01918 0.93688 0.99030 1.22225 0.99075 0.82515 0.96443 1.86500 1.82934 1.19126 1.49577 1.22196 0.90946 0.88063 0.99795 1.22461 1.04149 0.92009 1.05464 0.90798 0.86117 0.88660 0.88140 0.89762 0.89952 0.90550 0.89956 0.91234 0.91358 0.90829 0.91099 0.93774 0.93680 0.77553 0.91929 0.90802 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.92 10.97 55.55 0.61 -19.31 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.59 9.05 -37.73 -0.34 -11.93 16 8 H 0.08 1.84 7.90 -52.48 -0.41 1.42 16 9 C 0.10 2.52 5.57 -106.87 -0.59 1.93 16 10 C -0.14 -3.50 8.69 -38.81 -0.34 -3.84 16 11 C -0.12 -2.77 10.01 -39.72 -0.40 -3.16 16 12 C -0.17 -4.16 9.60 -38.92 -0.37 -4.54 16 13 C -0.12 -2.72 5.86 -105.04 -0.62 -3.34 16 14 C 0.58 12.72 7.81 -12.31 -0.10 12.62 16 15 O -0.56 -13.55 16.66 5.32 0.09 -13.46 16 16 N -0.62 -10.84 3.33 -175.70 -0.58 -11.42 16 17 C 0.10 1.42 4.86 -3.07 -0.01 1.40 16 18 C -0.13 -1.38 6.42 -24.90 -0.16 -1.54 16 19 C -0.10 -1.05 3.07 -88.46 -0.27 -1.32 16 20 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.10 -0.82 4.73 -26.73 -0.13 -0.95 16 22 C -0.12 -1.10 5.43 -26.73 -0.15 -1.25 16 23 C 0.08 0.57 7.05 37.16 0.26 0.83 16 24 O -0.58 -5.13 13.66 -35.23 -0.48 -5.61 16 25 C 0.11 1.58 5.55 -2.53 -0.01 1.56 16 26 C -0.22 -5.13 8.34 -38.44 -0.32 -5.45 16 27 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 28 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 29 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 30 H 0.10 2.33 7.65 -52.49 -0.40 1.93 16 31 H 0.08 1.31 6.68 -51.93 -0.35 0.96 16 32 H 0.08 1.28 6.80 -51.93 -0.35 0.93 16 33 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.07 0.75 7.46 -51.93 -0.39 0.36 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 1.55 9.12 45.56 0.42 1.96 16 42 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 43 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 44 H 0.13 2.68 2.76 -57.76 -0.16 2.52 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -31.06 354.60 -9.43 -40.49 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.73 Total: 8.41 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.64 Total: -17.23 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.02 Total: -30.73 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.39 Total: -19.07 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.06 -9.43 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468973641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.294 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds