Wall clock time and date at job start Tue Mar 31 2020 08:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99867 * 2 1 4 4 H 1.48504 * 109.46735 * 269.99763 * 3 2 1 5 5 H 1.48496 * 109.47011 * 29.99295 * 3 2 1 6 6 H 1.48493 * 109.47107 * 149.99666 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00935 * 0.02562 * 7 2 1 9 9 C 1.50711 * 119.99765 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.49722 * 60.06417 * 9 7 2 11 11 C 1.53036 * 109.52283 * 180.14840 * 9 7 2 12 12 C 1.53042 * 109.53440 * 181.33294 * 11 9 7 13 13 C 1.53625 * 109.24250 * 298.50886 * 12 11 9 14 14 N 1.46921 * 108.54089 * 54.85792 * 13 12 11 15 15 C 1.34784 * 120.62912 * 126.36802 * 14 13 12 16 16 O 1.21283 * 119.99910 * 179.71866 * 15 14 13 17 17 C 1.50694 * 119.99962 * 359.72121 * 15 14 13 18 18 C 1.53001 * 109.47054 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47051 * 179.97438 * 18 17 15 20 20 C 1.38292 * 119.97182 * 269.97486 * 19 18 17 21 21 C 1.38241 * 120.10853 * 180.02562 * 20 19 18 22 22 C 1.38163 * 120.05692 * 359.67667 * 21 20 19 23 23 C 1.38712 * 119.94410 * 0.62515 * 22 21 20 24 24 O 1.35896 * 120.05761 * 179.67345 * 23 22 21 25 25 C 1.38119 * 119.97279 * 90.00269 * 19 18 17 26 26 C 1.46927 * 118.74184 * 306.09070 * 14 13 12 27 27 H 0.96992 * 120.00410 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46194 * 301.35272 * 11 9 7 29 29 H 1.08998 * 109.46502 * 61.31304 * 11 9 7 30 30 H 1.09004 * 109.49586 * 58.58949 * 12 11 9 31 31 H 1.09000 * 109.49908 * 178.68144 * 12 11 9 32 32 H 1.08997 * 109.73957 * 295.12091 * 13 12 11 33 33 H 1.08996 * 109.66055 * 174.54748 * 13 12 11 34 34 H 1.08999 * 109.47398 * 59.99553 * 17 15 14 35 35 H 1.09001 * 109.47211 * 299.99531 * 17 15 14 36 36 H 1.08999 * 109.47029 * 60.00218 * 18 17 15 37 37 H 1.08994 * 109.46999 * 299.99558 * 18 17 15 38 38 H 1.08000 * 119.94141 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.96799 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.02720 * 180.29920 * 22 21 20 41 41 H 0.96700 * 114.00170 * 269.72567 * 24 23 22 42 42 H 1.08004 * 120.02777 * 359.96815 * 25 19 18 43 43 H 1.08998 * 109.58644 * 173.64697 * 26 14 13 44 44 H 1.08990 * 109.58742 * 294.08051 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8750 -0.6811 0.8916 11 6 4.0230 -2.6364 -0.0021 12 6 5.5530 -2.6370 0.0320 13 6 6.0877 -1.9320 -1.2238 14 7 5.4867 -0.5935 -1.2998 15 6 6.2628 0.5020 -1.4191 16 8 5.7543 1.6011 -1.4860 17 6 7.7623 0.3612 -1.4694 18 6 8.4002 1.7452 -1.6055 19 6 9.8998 1.6045 -1.6551 20 6 10.6358 1.6354 -0.4847 21 6 12.0116 1.5071 -0.5271 22 6 12.6541 1.3408 -1.7389 23 6 11.9188 1.3158 -2.9148 24 8 12.5491 1.1591 -4.1085 25 6 10.5381 1.4452 -2.8696 26 6 4.0233 -0.4722 -1.2495 27 1 -0.4850 0.8399 -0.0004 28 1 3.6400 -3.1595 0.8742 29 1 3.6798 -3.1415 -0.9050 30 1 5.8972 -2.1105 0.9223 31 1 5.9161 -3.6645 0.0534 32 1 5.8174 -2.5048 -2.1108 33 1 7.1721 -1.8425 -1.1605 34 1 8.0410 -0.2535 -2.3253 35 1 8.1138 -0.1119 -0.5525 36 1 8.1215 2.3595 -0.7492 37 1 8.0488 2.2187 -2.5222 38 1 10.1348 1.7600 0.4639 39 1 12.5842 1.5320 0.3883 40 1 13.7286 1.2358 -1.7710 41 1 12.8113 1.9904 -4.5270 42 1 9.9628 1.4211 -3.7834 43 1 3.7453 0.5807 -1.2031 44 1 3.5881 -0.9285 -2.1385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548727252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:58 Heat of formation + Delta-G solvation = -65.017976 kcal Electronic energy + Delta-G solvation = -24532.243152 eV Core-core repulsion = 21028.041660 eV Total energy + Delta-G solvation = -3504.201492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19929 -39.66310 -37.38122 -36.89532 -33.96089 -33.35068 -31.94121 -30.75964 -30.27416 -29.48431 -25.76696 -25.19356 -23.68324 -22.85120 -22.03965 -21.37321 -19.65212 -18.44920 -18.32157 -16.96230 -16.73293 -16.56574 -16.19940 -15.49556 -15.37498 -15.20306 -14.34527 -14.15498 -13.94080 -13.78608 -13.49847 -13.12305 -13.09594 -12.78588 -12.69367 -12.44815 -12.13872 -12.04992 -11.98023 -11.71950 -11.27350 -11.08842 -11.03748 -10.72596 -10.61715 -10.40194 -10.10802 -9.78266 -9.57102 -9.20951 -9.13693 -9.05032 -8.83156 -8.60125 -8.06163 -6.10746 -4.12347 0.95791 1.04176 2.97228 3.28114 3.37902 3.42953 3.50973 3.56862 3.90262 4.42103 4.46821 4.60501 4.80655 4.92720 4.97903 5.01190 5.09209 5.19158 5.21955 5.25806 5.32366 5.46987 5.50354 5.52576 5.69411 5.81335 5.82101 5.99978 6.05567 6.09191 6.12677 6.13221 6.17992 6.37322 6.38991 6.52599 6.54122 6.63985 6.74643 6.87164 7.14151 7.33503 7.43119 7.71528 7.87440 8.45642 8.58033 8.92316 9.50915 11.01282 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.003240 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.085652 B = 8638.993355 C = 9170.521164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.005 3.995 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.108 3.892 14 N -0.608 5.608 15 C 0.505 3.495 16 O -0.548 6.548 17 C -0.132 4.132 18 C -0.068 4.068 19 C -0.060 4.060 20 C -0.125 4.125 21 C -0.102 4.102 22 C -0.153 4.153 23 C 0.104 3.896 24 O -0.501 6.501 25 C -0.142 4.142 26 C 0.102 3.898 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.389 0.611 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.474 0.600 -3.907 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.015 4.015 14 N -0.341 5.341 15 C 0.292 3.708 16 O -0.427 6.427 17 C -0.172 4.172 18 C -0.106 4.106 19 C -0.060 4.060 20 C -0.143 4.143 21 C -0.120 4.120 22 C -0.171 4.171 23 C 0.060 3.940 24 O -0.311 6.311 25 C -0.160 4.160 26 C -0.019 4.019 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.245 0.755 42 H 0.147 0.853 43 H 0.097 0.903 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.932 0.684 -3.841 25.236 hybrid contribution 0.486 1.304 -0.182 1.403 sum 25.418 1.988 -4.023 25.811 Atomic orbital electron populations 1.69888 1.06278 1.27153 1.50071 1.25048 0.94761 0.99124 0.94084 0.86959 0.79589 0.83385 0.78944 1.19968 1.22348 1.18893 1.20963 0.88242 0.94612 1.51652 0.90479 1.19484 0.96813 0.92200 0.92983 0.95225 1.21440 0.92039 0.98832 1.01536 1.22063 0.98574 0.99506 0.97322 1.21804 0.97277 0.83536 0.98876 1.48455 1.08385 1.05886 1.71380 1.20604 0.89114 0.84379 0.76676 1.90689 1.75593 1.25726 1.50647 1.21657 0.92489 0.98844 1.04232 1.20389 0.88894 0.96519 1.04771 1.19864 0.95918 0.97639 0.92576 1.21166 0.93934 1.00990 0.98192 1.21036 0.94536 0.98956 0.97446 1.21399 1.00362 1.03038 0.92330 1.18466 0.90413 0.99907 0.85238 1.84825 1.78074 1.35079 1.33112 1.21369 0.93877 1.02252 0.98525 1.22586 0.75849 1.02443 1.01019 0.92511 0.92224 0.92510 0.92003 0.91651 0.91470 0.90591 0.89037 0.88933 0.89833 0.89978 0.85559 0.85577 0.85635 0.75477 0.85345 0.90333 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 3 Si 0.88 23.42 24.32 -169.99 -4.13 19.29 16 4 H -0.27 -7.34 6.92 56.52 0.39 -6.95 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.26 -7.01 6.53 56.52 0.37 -6.64 16 7 C -0.52 -14.36 9.15 -34.44 -0.31 -14.68 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 10 H 0.03 0.73 7.21 -51.93 -0.37 0.36 16 11 C -0.10 -1.88 5.11 -26.69 -0.14 -2.01 16 12 C -0.14 -1.96 6.10 -26.39 -0.16 -2.12 16 13 C 0.11 1.48 6.37 -3.49 -0.02 1.46 16 14 N -0.61 -11.09 2.97 -172.51 -0.51 -11.60 16 15 C 0.50 9.03 7.70 -10.98 -0.08 8.94 16 16 O -0.55 -12.14 15.40 5.56 0.09 -12.06 16 17 C -0.13 -1.64 4.03 -27.88 -0.11 -1.75 16 18 C -0.07 -0.81 4.63 -27.88 -0.13 -0.94 16 19 C -0.06 -0.62 5.13 -104.64 -0.54 -1.16 16 20 C -0.12 -1.17 9.70 -39.56 -0.38 -1.55 16 21 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.15 -1.32 9.99 -39.43 -0.39 -1.72 16 23 C 0.10 0.99 6.70 -39.22 -0.26 0.73 16 24 O -0.50 -4.25 13.50 -19.41 -0.26 -4.52 16 25 C -0.14 -1.42 9.64 -39.44 -0.38 -1.80 16 26 C 0.10 2.28 5.11 -3.71 -0.02 2.26 16 27 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 34 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 35 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16 36 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 37 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.39 1.43 9.06 45.56 0.41 1.84 16 42 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 43 H 0.08 1.99 2.32 -51.93 -0.12 1.87 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -34.80 350.98 -8.22 -43.02 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.86 Total: 1.00 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.60 Total: -13.62 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.26 Total: -38.40 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.18 Total: -16.57 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.13 Total: 19.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.80 -8.22 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548727252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.000 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds