Wall clock time and date at job start Tue Mar 31 2020 07:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47367 * 269.99909 * 3 2 1 5 5 H 1.48496 * 109.46648 * 30.00363 * 3 2 1 6 6 H 1.48503 * 109.46788 * 149.99959 * 3 2 1 7 7 C 1.37885 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 177.09371 * 7 2 1 9 9 C 1.50697 * 120.00073 * 357.35997 * 7 2 1 10 10 C 1.53005 * 115.54742 * 35.26170 * 9 7 2 11 11 N 1.46896 * 109.47208 * 55.79544 * 10 9 7 12 12 C 1.46904 * 111.00327 * 197.72684 * 11 10 9 13 13 C 1.52994 * 109.47640 * 173.11356 * 12 11 10 14 14 C 1.50697 * 109.47215 * 185.75711 * 13 12 11 15 15 C 1.38236 * 119.99525 * 269.72014 * 14 13 12 16 16 C 1.38230 * 119.99751 * 179.76391 * 15 14 13 17 17 C 1.38232 * 120.00131 * 0.51245 * 16 15 14 18 18 C 1.38236 * 120.00068 * 359.74447 * 17 16 15 19 19 C 1.38231 * 119.99696 * 359.97438 * 18 17 16 20 20 C 1.46905 * 111.00152 * 73.76832 * 11 10 9 21 21 C 1.50699 * 109.46890 * 59.93141 * 20 11 10 22 22 O 1.20825 * 119.99901 * 3.46699 * 21 20 11 23 23 O 1.34226 * 119.99824 * 183.45793 * 21 20 11 24 24 C 1.53001 * 117.50119 * 249.59008 * 9 7 2 25 25 C 1.53000 * 117.49795 * 180.92749 * 9 7 2 26 26 H 0.96997 * 120.00264 * 4.99751 * 1 2 3 27 27 H 1.08996 * 109.46725 * 175.79207 * 10 9 7 28 28 H 1.08993 * 109.47008 * 295.79504 * 10 9 7 29 29 H 1.08999 * 109.46647 * 293.11545 * 12 11 10 30 30 H 1.09000 * 109.47083 * 53.10540 * 12 11 10 31 31 H 1.09005 * 109.46904 * 305.75746 * 13 12 11 32 32 H 1.09000 * 109.47172 * 65.74530 * 13 12 11 33 33 H 1.08003 * 120.00454 * 0.02562 * 15 14 13 34 34 H 1.08008 * 120.00141 * 180.23215 * 16 15 14 35 35 H 1.08006 * 120.00114 * 179.72416 * 17 16 15 36 36 H 1.07998 * 120.00534 * 179.97438 * 18 17 16 37 37 H 1.08004 * 120.00271 * 179.97438 * 19 18 17 38 38 H 1.08998 * 109.46832 * 179.97438 * 20 11 10 39 39 H 1.09002 * 109.47121 * 299.92815 * 20 11 10 40 40 H 0.96698 * 116.99891 * 179.97438 * 23 21 20 41 41 H 1.08996 * 117.49595 * 0.02562 * 24 9 7 42 42 H 1.09004 * 117.49819 * 145.02463 * 24 9 7 43 43 H 1.08997 * 117.49904 * 214.98211 * 25 9 7 44 44 H 1.08996 * 117.49692 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0835 -1.1947 -0.0480 9 6 1.2522 -2.4985 0.0590 10 6 -0.0846 -2.5238 -0.6848 11 7 0.1282 -2.1430 -2.0875 12 6 -1.1358 -1.7484 -2.7236 13 6 -0.8527 -1.1976 -4.1226 14 6 -2.1288 -0.6629 -4.7197 15 6 -2.9420 -1.4926 -5.4689 16 6 -4.1150 -1.0035 -6.0126 17 6 -4.4696 0.3180 -5.8160 18 6 -3.6538 1.1491 -5.0712 19 6 -2.4836 0.6585 -4.5227 20 6 0.7774 -3.2283 -2.8350 21 6 -0.0932 -4.4577 -2.7934 22 8 -1.1744 -4.4143 -2.2556 23 8 0.3323 -5.6007 -3.3538 24 6 1.3599 -3.3181 1.3465 25 6 2.0749 -3.7884 0.0773 26 1 -0.4850 0.8368 -0.0732 27 1 -0.5059 -3.5281 -0.6409 28 1 -0.7736 -1.8200 -0.2179 29 1 -1.7903 -2.6166 -2.8005 30 1 -1.6210 -0.9799 -2.1218 31 1 -0.1187 -0.3946 -4.0552 32 1 -0.4617 -1.9949 -4.7547 33 1 -2.6630 -2.5241 -5.6259 34 1 -4.7523 -1.6527 -6.5948 35 1 -5.3839 0.7014 -6.2445 36 1 -3.9305 2.1817 -4.9179 37 1 -1.8460 1.3078 -3.9412 38 1 0.9227 -2.9201 -3.8704 39 1 1.7442 -3.4523 -2.3842 40 1 -0.2609 -6.3626 -3.3016 41 1 1.9745 -2.9136 2.1506 42 1 0.4785 -3.8757 1.6634 43 1 1.6637 -4.6550 -0.4402 44 1 3.1603 -3.6934 0.0458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:57 Heat of formation + Delta-G solvation = -24.834383 kcal Electronic energy + Delta-G solvation = -25646.117057 eV Core-core repulsion = 22143.658056 eV Total energy + Delta-G solvation = -3502.459001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25162 -39.07934 -37.39809 -35.87057 -35.01899 -32.52848 -32.01629 -30.73366 -28.46210 -27.74678 -25.45873 -24.15340 -22.40904 -22.35507 -21.15303 -21.00380 -19.79943 -18.88489 -17.75468 -16.70107 -16.24991 -15.91866 -15.64112 -15.12670 -15.04430 -14.59136 -14.27046 -14.09445 -13.62465 -13.25436 -13.23107 -12.84487 -12.60563 -12.58255 -12.35079 -11.58636 -11.49616 -11.36027 -11.11359 -10.92833 -10.91050 -10.84583 -10.73811 -10.43257 -10.42808 -10.40369 -10.10335 -9.78443 -9.37658 -8.82225 -8.77163 -8.66536 -8.44832 -8.06316 -7.23457 -5.80348 -3.91739 1.52068 1.55176 2.59792 3.34945 3.41747 3.44878 3.52167 3.93745 4.47912 4.63196 5.00556 5.06102 5.13575 5.20993 5.32781 5.50194 5.62912 5.65132 5.66650 5.74354 5.82184 5.87174 6.06734 6.11193 6.13642 6.21984 6.27947 6.42934 6.51168 6.60874 6.63171 6.65011 6.68162 6.73083 6.86667 6.93693 6.95714 7.03089 7.17752 7.24369 7.34310 7.63393 7.96563 8.14318 8.17165 8.33405 8.58180 9.03497 9.69129 11.13962 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.005897 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.721661 B = 4747.020173 C = 6662.847750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.085 3.915 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.471 4.471 8 H 0.054 0.946 9 C 0.064 3.936 10 C 0.088 3.912 11 N -0.457 5.457 12 C 0.053 3.947 13 C -0.083 4.083 14 C -0.066 4.066 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.111 4.111 20 C 0.055 3.945 21 C 0.440 3.560 22 O -0.513 6.513 23 O -0.529 6.529 24 C -0.208 4.208 25 C -0.221 4.221 26 H 0.256 0.744 27 H 0.014 0.986 28 H 0.124 0.876 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.394 0.606 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -3.392 -10.974 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.117 4.117 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.063 3.937 10 C -0.038 4.038 11 N -0.178 5.178 12 C -0.075 4.075 13 C -0.120 4.120 14 C -0.067 4.067 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.076 4.076 21 C 0.282 3.718 22 O -0.401 6.401 23 O -0.339 6.339 24 C -0.247 4.247 25 C -0.258 4.258 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.142 0.858 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.251 0.749 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.031 -2.461 -10.770 12.140 hybrid contribution -0.458 -0.506 0.077 0.687 sum -5.489 -2.967 -10.694 12.381 Atomic orbital electron populations 1.69763 1.05763 1.25766 1.49817 1.24764 0.94628 0.98382 0.93971 0.86655 0.79772 0.83857 0.77954 1.20733 1.21560 1.20285 1.20315 0.91952 0.88599 1.49968 0.92809 1.19076 0.92937 0.89080 0.92566 1.22133 0.98328 0.97998 0.85371 1.62240 1.22924 1.29809 1.02813 1.22250 0.91805 1.00256 0.93184 1.20736 0.93971 1.00964 0.96372 1.19984 0.96677 0.93701 0.96291 1.21039 0.94921 0.99367 0.98423 1.21066 0.96919 0.95700 1.00383 1.21059 0.99753 0.94169 1.00141 1.21129 0.94983 0.99628 0.98060 1.21167 0.97007 0.95422 0.99356 1.22554 0.98933 0.84016 1.02143 1.26256 0.86936 0.85136 0.73498 1.90635 1.23555 1.84458 1.41454 1.84685 1.52914 1.22226 1.74073 1.22972 1.01289 1.07470 0.92950 1.22943 0.98249 1.00708 1.03939 0.93353 0.96781 0.85801 0.93510 0.89679 0.89806 0.92161 0.86611 0.86584 0.86629 0.86374 0.85702 0.87880 0.86222 0.74881 0.90443 0.92032 0.92369 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.74 10.21 55.43 0.57 -22.18 16 2 C 0.09 2.20 5.35 -17.82 -0.10 2.10 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.47 -12.26 8.77 -34.44 -0.30 -12.56 16 8 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.06 1.54 1.73 -155.66 -0.27 1.27 16 10 C 0.09 2.04 3.58 -3.82 -0.01 2.02 16 11 N -0.46 -9.35 4.25 -236.07 -1.00 -10.35 16 12 C 0.05 1.00 4.64 -3.83 -0.02 0.98 16 13 C -0.08 -1.32 5.03 -27.89 -0.14 -1.46 16 14 C -0.07 -0.99 5.13 -104.63 -0.54 -1.53 16 15 C -0.12 -1.64 9.70 -39.59 -0.38 -2.03 16 16 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 17 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 18 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 19 C -0.11 -1.62 9.70 -39.59 -0.38 -2.01 16 20 C 0.05 0.96 5.49 -4.97 -0.03 0.93 16 21 C 0.44 7.49 7.54 36.01 0.27 7.76 16 22 O -0.51 -10.08 12.49 -18.75 -0.23 -10.32 16 23 O -0.53 -7.25 13.42 -39.25 -0.53 -7.78 16 24 C -0.21 -4.73 9.96 -26.69 -0.27 -4.99 16 25 C -0.22 -4.73 8.43 -26.69 -0.23 -4.96 16 26 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 27 H 0.01 0.34 5.28 -51.93 -0.27 0.06 16 28 H 0.12 3.22 5.49 -51.93 -0.29 2.94 16 29 H 0.05 0.93 5.54 -51.93 -0.29 0.64 16 30 H 0.08 1.80 7.92 -51.93 -0.41 1.39 16 31 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 32 H 0.06 0.87 6.62 -51.93 -0.34 0.53 16 33 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.10 1.55 6.31 -51.93 -0.33 1.22 16 39 H 0.12 2.18 6.28 -51.93 -0.33 1.86 16 40 H 0.39 3.77 9.10 45.56 0.41 4.18 16 41 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 44 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -28.66 355.95 -10.05 -38.71 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.61 Total: 11.31 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.58 Total: -20.29 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: -0.44 Total: -32.52 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.76 Total: -18.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.66 -10.05 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.874 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds