Wall clock time and date at job start Tue Mar 31 2020 08:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00656 * 2 1 4 4 H 1.48502 * 109.47205 * 240.00101 * 3 2 1 5 5 H 1.48503 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47524 * 119.99548 * 3 2 1 7 7 C 1.37882 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99738 * 359.72407 * 7 2 1 10 10 C 1.53000 * 109.47217 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47285 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46963 * 179.97438 * 11 10 9 13 13 C 1.48558 * 110.99937 * 69.87736 * 12 11 10 14 14 C 1.54378 * 104.59688 * 159.03960 * 13 12 11 15 15 H 1.09002 * 110.32819 * 95.03799 * 14 13 12 16 16 C 1.50697 * 110.32355 * 217.24878 * 14 13 12 17 17 O 1.20825 * 120.00255 * 21.33533 * 16 14 13 18 18 O 1.34223 * 119.99972 * 201.33675 * 16 14 13 19 19 C 1.54259 * 105.05939 * 336.14341 * 14 13 12 20 20 H 1.08996 * 110.32263 * 118.99723 * 19 14 13 21 21 C 1.50704 * 110.32545 * 241.10695 * 19 14 13 22 22 C 1.38230 * 120.00098 * 69.61754 * 21 19 14 23 23 C 1.38231 * 119.99840 * 179.76744 * 22 21 19 24 24 C 1.38231 * 120.00211 * 0.50744 * 23 22 21 25 25 C 1.38234 * 119.99842 * 359.75073 * 24 23 22 26 26 C 1.38233 * 119.99424 * 249.89537 * 21 19 14 27 27 C 1.48562 * 110.99708 * 185.29016 * 12 11 10 28 28 H 0.97004 * 119.99419 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47582 * 300.00316 * 9 7 2 30 30 H 1.09003 * 109.46875 * 60.00122 * 9 7 2 31 31 H 1.09007 * 109.47048 * 300.00427 * 10 9 7 32 32 H 1.09000 * 109.47042 * 59.99497 * 10 9 7 33 33 H 1.08994 * 109.47446 * 299.99726 * 11 10 9 34 34 H 1.08997 * 109.47153 * 60.00434 * 11 10 9 35 35 H 1.09008 * 110.40844 * 277.81753 * 13 12 11 36 36 H 1.09001 * 110.41485 * 40.13632 * 13 12 11 37 37 H 0.96702 * 117.00040 * 180.02562 * 18 16 14 38 38 H 1.08003 * 120.00232 * 0.02562 * 22 21 19 39 39 H 1.08007 * 120.00090 * 180.23020 * 23 22 21 40 40 H 1.08000 * 120.00123 * 179.72186 * 24 23 22 41 41 H 1.08001 * 120.00115 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00583 * 359.97438 * 26 21 19 43 43 H 1.08994 * 110.41327 * 319.74271 * 27 12 11 44 44 H 1.09000 * 110.40782 * 82.18318 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0074 10 6 2.2449 -3.6622 0.0059 11 6 1.4799 -4.9871 0.0123 12 7 2.4344 -6.1038 0.0102 13 6 3.1490 -6.1956 1.3094 14 6 3.6690 -7.6481 1.3656 15 1 4.6967 -7.6966 1.0053 16 6 3.5805 -8.1817 2.7721 17 8 2.8225 -7.6741 3.5643 18 8 4.3438 -9.2209 3.1449 19 6 2.7355 -8.4444 0.4307 20 1 3.3052 -8.8852 -0.3873 21 6 2.0134 -9.5185 1.2029 22 6 1.0440 -9.1731 2.1257 23 6 0.3783 -10.1585 2.8305 24 6 0.6894 -11.4888 2.6200 25 6 1.6626 -11.8339 1.7010 26 6 2.3247 -10.8487 0.9924 27 6 1.7300 -7.4061 -0.1117 28 1 -0.4849 0.8401 -0.0004 29 1 0.6278 -2.5544 0.9001 30 1 0.6205 -2.5594 -0.8798 31 1 2.8676 -3.6068 -0.8871 32 1 2.8757 -3.6021 0.8929 33 1 0.8570 -5.0428 0.9050 34 1 0.8495 -5.0469 -0.8749 35 1 3.9816 -5.4925 1.3358 36 1 2.4636 -6.0031 2.1348 37 1 4.2519 -9.5282 4.0572 38 1 0.8037 -8.1335 2.2931 39 1 -0.3818 -9.8888 3.5488 40 1 0.1724 -12.2584 3.1739 41 1 1.9060 -12.8733 1.5369 42 1 3.0850 -11.1184 0.2743 43 1 0.8221 -7.4050 0.4914 44 1 1.4941 -7.6144 -1.1552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:50 Heat of formation + Delta-G solvation = -70.399631 kcal Electronic energy + Delta-G solvation = -24783.570044 eV Core-core repulsion = 21279.135186 eV Total energy + Delta-G solvation = -3504.434858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26405 -39.27222 -38.27101 -36.17269 -34.67385 -33.00711 -31.37368 -31.10698 -30.32935 -28.26208 -26.31814 -24.23406 -23.41634 -22.71111 -21.86824 -20.88981 -20.28196 -19.46088 -18.22911 -17.44244 -16.54937 -16.39424 -16.08572 -15.43058 -15.21996 -14.91734 -14.80006 -14.39262 -14.09976 -13.80859 -13.48258 -13.10709 -12.99362 -12.94502 -12.60579 -12.19337 -11.88599 -11.81950 -11.55264 -11.52807 -11.45625 -11.20267 -11.05635 -10.89095 -10.74876 -10.51790 -10.50108 -10.46370 -9.62098 -9.30906 -9.10024 -9.04935 -8.92935 -8.32289 -8.29818 -5.96377 -3.98333 1.07455 1.20646 2.10829 2.83954 3.36130 3.40086 3.42863 3.52396 4.09893 4.27794 4.48084 4.52814 4.56061 4.71830 4.79066 4.92236 5.02820 5.14139 5.19452 5.28236 5.29449 5.39400 5.41763 5.60776 5.71321 5.72767 5.76701 5.85667 5.91751 5.96144 5.99075 6.24581 6.31098 6.32265 6.38049 6.39922 6.64859 6.74495 6.77824 6.95192 7.20007 7.28942 7.71617 7.78016 7.86764 8.04092 8.47303 9.08627 9.65399 11.15124 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.002845 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.709888 B = 9839.563635 C =10103.867722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.045 3.955 12 N -0.506 5.506 13 C 0.041 3.959 14 C -0.081 4.081 15 H 0.115 0.885 16 C 0.491 3.509 17 O -0.508 6.508 18 O -0.513 6.513 19 C -0.036 4.036 20 H 0.102 0.898 21 C -0.097 4.097 22 C -0.102 4.102 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.101 4.101 27 C 0.034 3.966 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.406 0.594 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.052 0.948 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -26.003 4.047 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.082 4.082 12 N -0.229 5.229 13 C -0.088 4.088 14 C -0.101 4.101 15 H 0.133 0.867 16 C 0.333 3.667 17 O -0.395 6.395 18 O -0.325 6.325 19 C -0.055 4.055 20 H 0.120 0.880 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.119 4.119 27 C -0.094 4.094 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.264 0.736 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.070 0.930 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.444 -25.481 3.399 26.277 hybrid contribution -0.255 0.612 1.371 1.523 sum 5.189 -24.869 4.771 25.849 Atomic orbital electron populations 1.69958 1.06060 1.26640 1.50971 1.25026 0.94845 0.99234 0.95401 0.86660 0.79579 0.83158 0.78614 1.20218 1.21332 1.20278 1.21215 0.93013 0.91053 1.50418 0.92723 1.19070 0.94030 0.91379 0.97093 1.21612 0.99150 0.92531 1.00842 1.22490 0.93854 0.91185 1.00666 1.65533 1.25472 1.02127 1.29794 1.23179 1.00176 0.92551 0.92845 1.21893 1.03180 0.96619 0.88434 0.86712 1.23094 0.76305 0.76686 0.90607 1.90714 1.36868 1.58048 1.53890 1.84531 1.62790 1.48012 1.37124 1.20851 0.95198 0.93449 0.96045 0.88011 1.19826 0.97728 0.94274 0.97872 1.21234 0.95339 1.00125 0.95292 1.21145 0.99981 0.92888 0.99744 1.21172 0.97980 0.96230 0.98434 1.21108 0.96941 0.99217 0.97000 1.21017 0.99377 0.91945 0.99526 1.23311 0.95357 0.88928 1.01763 0.92999 0.96839 0.96582 0.92480 0.93527 0.94769 0.90822 0.88883 0.91343 0.73642 0.85595 0.86108 0.86257 0.86119 0.85907 0.92978 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.16 5.21 -26.73 -0.14 -2.30 16 11 C 0.05 0.79 4.81 -3.82 -0.02 0.77 16 12 N -0.51 -7.39 5.37 -229.97 -1.24 -8.62 16 13 C 0.04 0.56 5.21 -2.18 -0.01 0.55 16 14 C -0.08 -0.90 3.55 -90.39 -0.32 -1.22 16 15 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.49 5.73 5.06 36.00 0.18 5.91 16 17 O -0.51 -7.36 14.51 -18.75 -0.27 -7.63 16 18 O -0.51 -4.71 13.36 -39.24 -0.52 -5.23 16 19 C -0.04 -0.38 3.28 -90.39 -0.30 -0.67 16 20 H 0.10 0.88 7.97 -51.93 -0.41 0.47 16 21 C -0.10 -1.01 3.68 -104.62 -0.39 -1.39 16 22 C -0.10 -1.18 6.46 -39.59 -0.26 -1.43 16 23 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 24 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.10 -0.91 9.68 -39.58 -0.38 -1.29 16 27 C 0.03 0.42 5.90 -2.18 -0.01 0.41 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.97 7.26 -51.93 -0.38 0.59 16 33 H 0.03 0.61 7.88 -51.93 -0.41 0.20 16 34 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.09 1.29 7.77 -51.92 -0.40 0.89 16 36 H 0.07 1.07 6.49 -51.93 -0.34 0.74 16 37 H 0.41 2.31 9.10 45.56 0.41 2.73 16 38 H 0.13 1.66 6.43 -52.48 -0.34 1.32 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.89 8.00 -52.49 -0.42 0.47 16 43 H 0.05 0.67 5.99 -51.93 -0.31 0.36 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -32.94 355.84 -10.28 -43.22 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.94 Total: 1.06 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.38 Total: -18.50 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.50 Total: -35.25 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.80 Total: -12.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.94 -10.28 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.178 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds