Wall clock time and date at job start Tue Mar 31 2020 08:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00656 * 2 1 4 4 H 1.48502 * 109.47205 * 240.00101 * 3 2 1 5 5 H 1.48503 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47524 * 119.99548 * 3 2 1 7 7 C 1.37882 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99738 * 359.72407 * 7 2 1 10 10 C 1.53000 * 109.47217 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47285 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46963 * 179.97438 * 11 10 9 13 13 C 1.48558 * 110.99937 * 69.87736 * 12 11 10 14 14 C 1.54378 * 104.59688 * 159.03960 * 13 12 11 15 15 H 1.09002 * 110.32819 * 95.03799 * 14 13 12 16 16 C 1.50697 * 110.32355 * 217.24878 * 14 13 12 17 17 O 1.20825 * 120.00255 * 21.33533 * 16 14 13 18 18 O 1.34223 * 119.99972 * 201.33675 * 16 14 13 19 19 C 1.54259 * 105.05939 * 336.14341 * 14 13 12 20 20 H 1.08996 * 110.32263 * 118.99723 * 19 14 13 21 21 C 1.50704 * 110.32545 * 241.10695 * 19 14 13 22 22 C 1.38230 * 120.00098 * 69.61754 * 21 19 14 23 23 C 1.38231 * 119.99840 * 179.76744 * 22 21 19 24 24 C 1.38231 * 120.00211 * 0.50744 * 23 22 21 25 25 C 1.38234 * 119.99842 * 359.75073 * 24 23 22 26 26 C 1.38233 * 119.99424 * 249.89537 * 21 19 14 27 27 C 1.48562 * 110.99708 * 185.29016 * 12 11 10 28 28 H 0.97004 * 119.99419 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47582 * 300.00316 * 9 7 2 30 30 H 1.09003 * 109.46875 * 60.00122 * 9 7 2 31 31 H 1.09007 * 109.47048 * 300.00427 * 10 9 7 32 32 H 1.09000 * 109.47042 * 59.99497 * 10 9 7 33 33 H 1.08994 * 109.47446 * 299.99726 * 11 10 9 34 34 H 1.08997 * 109.47153 * 60.00434 * 11 10 9 35 35 H 1.09008 * 110.40844 * 277.81753 * 13 12 11 36 36 H 1.09001 * 110.41485 * 40.13632 * 13 12 11 37 37 H 0.96702 * 117.00040 * 180.02562 * 18 16 14 38 38 H 1.08003 * 120.00232 * 0.02562 * 22 21 19 39 39 H 1.08007 * 120.00090 * 180.23020 * 23 22 21 40 40 H 1.08000 * 120.00123 * 179.72186 * 24 23 22 41 41 H 1.08001 * 120.00115 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00583 * 359.97438 * 26 21 19 43 43 H 1.08994 * 110.41327 * 319.74271 * 27 12 11 44 44 H 1.09000 * 110.40782 * 82.18318 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0074 10 6 2.2449 -3.6622 0.0059 11 6 1.4799 -4.9871 0.0123 12 7 2.4344 -6.1038 0.0102 13 6 3.1490 -6.1956 1.3094 14 6 3.6690 -7.6481 1.3656 15 1 4.6967 -7.6966 1.0053 16 6 3.5805 -8.1817 2.7721 17 8 2.8225 -7.6741 3.5643 18 8 4.3438 -9.2209 3.1449 19 6 2.7355 -8.4444 0.4307 20 1 3.3052 -8.8852 -0.3873 21 6 2.0134 -9.5185 1.2029 22 6 1.0440 -9.1731 2.1257 23 6 0.3783 -10.1585 2.8305 24 6 0.6894 -11.4888 2.6200 25 6 1.6626 -11.8339 1.7010 26 6 2.3247 -10.8487 0.9924 27 6 1.7300 -7.4061 -0.1117 28 1 -0.4849 0.8401 -0.0004 29 1 0.6278 -2.5544 0.9001 30 1 0.6205 -2.5594 -0.8798 31 1 2.8676 -3.6068 -0.8871 32 1 2.8757 -3.6021 0.8929 33 1 0.8570 -5.0428 0.9050 34 1 0.8495 -5.0469 -0.8749 35 1 3.9816 -5.4925 1.3358 36 1 2.4636 -6.0031 2.1348 37 1 4.2519 -9.5282 4.0572 38 1 0.8037 -8.1335 2.2931 39 1 -0.3818 -9.8888 3.5488 40 1 0.1724 -12.2584 3.1739 41 1 1.9060 -12.8733 1.5369 42 1 3.0850 -11.1184 0.2743 43 1 0.8221 -7.4050 0.4914 44 1 1.4941 -7.6144 -1.1552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:49 Heat of formation + Delta-G solvation = -91.247555 kcal Electronic energy + Delta-G solvation = -24784.474078 eV Core-core repulsion = 21279.135186 eV Total energy + Delta-G solvation = -3505.338892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16508 -40.09835 -39.25850 -37.05836 -36.27507 -34.70086 -32.82678 -31.82260 -31.50999 -29.38326 -27.95716 -25.58184 -24.55480 -23.59220 -22.99734 -22.09019 -21.67405 -20.52808 -19.10158 -18.55415 -18.20187 -17.40669 -17.14479 -16.55398 -16.34889 -16.12176 -16.03410 -15.69045 -15.32246 -14.90184 -14.40068 -14.23720 -14.10275 -14.03826 -13.82277 -13.73893 -13.32438 -12.96610 -12.83381 -12.68773 -12.57678 -12.48344 -12.41172 -12.27368 -12.11235 -11.95545 -11.70881 -11.46203 -11.40050 -11.36197 -11.10107 -10.55398 -9.82591 -9.70518 -9.51690 -8.20490 -6.31733 0.35182 0.48487 1.21638 1.39364 1.43016 1.50843 2.00588 2.40735 2.79085 3.02956 3.12551 3.29741 3.63120 3.68583 3.97453 4.10340 4.15808 4.17116 4.23024 4.26466 4.32117 4.39329 4.47350 4.57093 4.63344 4.69217 4.72130 4.80451 4.89250 4.93680 4.98576 5.05283 5.08916 5.15070 5.22655 5.50759 5.55131 5.60201 5.61805 5.65654 5.69032 5.80487 5.84896 5.92276 6.08774 6.25622 6.84877 6.99148 7.37428 8.91471 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.002845 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.709888 B = 9839.563635 C =10103.867722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.057 3.943 12 N -0.503 5.503 13 C 0.038 3.962 14 C -0.077 4.077 15 H 0.141 0.859 16 C 0.497 3.503 17 O -0.544 6.544 18 O -0.503 6.503 19 C -0.028 4.028 20 H 0.130 0.870 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.137 4.137 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.100 4.100 27 C 0.032 3.968 28 H 0.264 0.736 29 H -0.015 1.015 30 H -0.006 1.006 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.021 0.979 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.421 0.579 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.039 0.961 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 -28.069 3.353 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.071 4.071 12 N -0.227 5.227 13 C -0.090 4.090 14 C -0.097 4.097 15 H 0.159 0.841 16 C 0.341 3.659 17 O -0.434 6.434 18 O -0.316 6.316 19 C -0.046 4.046 20 H 0.148 0.852 21 C -0.105 4.105 22 C -0.139 4.139 23 C -0.155 4.155 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.095 4.095 28 H 0.072 0.928 29 H 0.004 0.996 30 H 0.012 0.988 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.282 0.718 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.057 0.943 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.624 -27.583 2.712 28.745 hybrid contribution -0.969 1.167 1.634 2.230 sum 6.655 -26.416 4.346 27.586 Atomic orbital electron populations 1.70098 1.07864 1.27851 1.51685 1.26013 0.95795 1.03466 0.94684 0.85484 0.78275 0.77945 0.79257 1.18916 1.20776 1.19255 1.21668 0.93573 0.92346 1.50577 0.92137 1.18969 0.94417 0.93200 0.94609 1.21340 0.97929 0.92413 1.00797 1.22194 0.93783 0.90946 1.00151 1.65477 1.24746 1.02323 1.30127 1.23132 0.99449 0.94903 0.91508 1.21884 1.04590 0.94594 0.88627 0.84121 1.23127 0.75685 0.76669 0.90458 1.90717 1.38441 1.59326 1.54944 1.84476 1.61733 1.46852 1.38508 1.20865 0.94527 0.92763 0.96480 0.85175 1.19833 0.97713 0.95122 0.97847 1.21108 0.96899 0.98986 0.96877 1.21283 1.00369 0.93734 1.00093 1.21454 0.98042 0.95786 0.98519 1.21482 0.95991 1.00576 0.95976 1.21316 0.99628 0.91099 0.99686 1.23396 0.95446 0.88160 1.02513 0.92758 0.99631 0.98773 0.92235 0.93581 0.96116 0.90657 0.89097 0.93952 0.71794 0.88536 0.86161 0.84107 0.83290 0.83437 0.94306 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.74 5.21 30.59 0.16 -3.59 16 11 C 0.06 2.08 4.81 86.30 0.41 2.50 16 12 N -0.50 -14.71 5.37 -881.49 -4.73 -19.44 16 13 C 0.04 1.07 5.21 86.45 0.45 1.52 16 14 C -0.08 -1.61 3.55 -10.65 -0.04 -1.65 16 15 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 16 C 0.50 11.20 5.06 71.24 0.36 11.56 16 17 O -0.54 -16.25 14.51 21.97 0.32 -15.93 16 18 O -0.50 -8.13 13.36 -51.35 -0.69 -8.82 16 19 C -0.03 -0.52 3.28 -10.64 -0.03 -0.55 16 20 H 0.13 1.74 7.97 -2.39 -0.02 1.72 16 21 C -0.10 -2.02 3.68 -19.87 -0.07 -2.09 16 22 C -0.12 -2.84 6.46 22.27 0.14 -2.69 16 23 C -0.14 -2.80 10.05 22.27 0.22 -2.58 16 24 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 25 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 26 C -0.10 -1.46 9.68 22.27 0.22 -1.25 16 27 C 0.03 0.77 5.90 86.45 0.51 1.28 16 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 29 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.06 2.52 8.14 -2.38 -0.02 2.51 16 32 H 0.05 1.96 7.26 -2.39 -0.02 1.95 16 33 H 0.02 0.80 7.88 -2.39 -0.02 0.78 16 34 H 0.07 2.68 8.13 -2.39 -0.02 2.66 16 35 H 0.09 2.54 7.77 -2.38 -0.02 2.52 16 36 H 0.04 1.42 6.49 -2.39 -0.02 1.40 16 37 H 0.42 3.99 9.10 -74.06 -0.67 3.31 16 38 H 0.10 2.79 6.43 -2.91 -0.02 2.77 16 39 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.15 1.43 8.00 -2.91 -0.02 1.41 16 43 H 0.04 1.04 5.99 -2.39 -0.01 1.03 16 44 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -73.14 355.84 1.15 -71.98 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.32 Total: 13.46 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.62 Total: -30.42 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -4.45 Total: -77.55 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.37 Total: -24.75 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.14 1.15 -71.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.263 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds