Wall clock time and date at job start Tue Mar 31 2020 08:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48502 * 109.46970 * 239.99698 * 3 2 1 5 5 H 1.48502 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47268 * 119.99658 * 3 2 1 7 7 C 1.37876 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47598 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47907 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47786 * 180.02562 * 11 10 9 13 13 C 1.47844 * 110.99995 * 75.86521 * 12 11 10 14 14 H 1.09003 * 110.37563 * 27.54108 * 13 12 11 15 15 C 1.50701 * 110.37807 * 265.19929 * 13 12 11 16 16 O 1.20827 * 119.99903 * 3.16897 * 15 13 12 17 17 O 1.34228 * 120.00213 * 183.17413 * 15 13 12 18 18 C 1.54912 * 104.79532 * 146.36851 * 13 12 11 19 19 C 1.55145 * 101.65018 * 322.93188 * 18 13 12 20 20 C 1.47442 * 111.00213 * 196.71361 * 12 11 10 21 21 H 1.08999 * 109.88361 * 117.33590 * 20 12 11 22 22 C 1.50694 * 110.02076 * 356.22378 * 20 12 11 23 23 C 1.38239 * 120.00221 * 296.24069 * 22 20 12 24 24 C 1.38226 * 120.00284 * 179.79381 * 23 22 20 25 25 C 1.38234 * 120.00045 * 0.46308 * 24 23 22 26 26 C 1.38236 * 120.00090 * 359.76841 * 25 24 23 27 27 C 1.38235 * 120.00009 * 116.52185 * 22 20 12 28 28 H 0.96995 * 120.00310 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47352 * 59.99975 * 9 7 2 30 30 H 1.09000 * 109.47529 * 300.00491 * 9 7 2 31 31 H 1.09007 * 109.47164 * 59.99974 * 10 9 7 32 32 H 1.09000 * 109.47146 * 300.00805 * 10 9 7 33 33 H 1.08997 * 109.46902 * 59.99502 * 11 10 9 34 34 H 1.09005 * 109.46519 * 300.00473 * 11 10 9 35 35 H 0.96692 * 116.99884 * 179.97438 * 17 15 13 36 36 H 1.08990 * 110.98913 * 81.02381 * 18 13 12 37 37 H 1.08998 * 110.98774 * 204.84563 * 18 13 12 38 38 H 1.08996 * 110.70467 * 154.04041 * 19 18 13 39 39 H 1.08997 * 110.70543 * 277.09505 * 19 18 13 40 40 H 1.08008 * 119.99847 * 0.02562 * 23 22 20 41 41 H 1.08004 * 120.00290 * 180.24913 * 24 23 22 42 42 H 1.07999 * 120.00654 * 179.79321 * 25 24 23 43 43 H 1.07996 * 120.00472 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00099 * 359.96976 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4805 -4.9871 0.0020 12 7 2.4350 -6.1036 0.0024 13 6 3.0356 -6.2868 1.3409 14 1 2.3521 -5.9370 2.1146 15 6 4.3502 -5.5555 1.4307 16 8 4.7354 -4.8887 0.4997 17 8 5.0932 -5.6450 2.5450 18 6 3.2584 -7.8145 1.4688 19 6 2.0041 -8.3755 0.7484 20 6 1.7764 -7.3621 -0.3930 21 1 2.2181 -7.7377 -1.3159 22 6 0.2998 -7.1325 -0.5878 23 6 -0.4876 -6.7513 0.4825 24 6 -1.8412 -6.5365 0.3029 25 6 -2.4093 -6.7124 -0.9450 26 6 -1.6229 -7.0983 -2.0143 27 6 -0.2684 -7.3089 -1.8356 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 2.8727 -3.6039 0.8910 32 1 2.8714 -3.6046 -0.8890 33 1 0.8534 -5.0450 -0.8876 34 1 0.8542 -5.0446 0.8923 35 1 5.9288 -5.1587 2.5557 36 1 4.1714 -8.1200 0.9579 37 1 3.2771 -8.1200 2.5149 38 1 2.2023 -9.3695 0.3475 39 1 1.1492 -8.3974 1.4241 40 1 -0.0444 -6.6175 1.4584 41 1 -2.4557 -6.2347 1.1382 42 1 -3.4675 -6.5479 -1.0847 43 1 -2.0667 -7.2361 -2.9892 44 1 0.3460 -7.6107 -2.6709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:58 Heat of formation + Delta-G solvation = -60.268374 kcal Electronic energy + Delta-G solvation = -25475.463349 eV Core-core repulsion = 21971.467815 eV Total energy + Delta-G solvation = -3503.995534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89302 -39.57233 -37.76438 -35.78523 -34.29294 -32.46657 -32.08438 -30.87496 -30.06623 -28.42713 -26.22382 -24.10151 -22.90230 -22.49576 -22.07099 -20.95880 -19.96993 -19.41389 -17.83366 -16.94193 -16.68449 -16.21592 -15.79461 -15.47180 -15.09466 -14.85716 -14.44039 -14.32918 -14.05265 -13.53944 -13.34537 -13.04021 -12.92148 -12.68106 -12.25588 -12.03721 -11.88388 -11.86654 -11.45140 -11.26163 -11.23716 -11.06879 -10.89705 -10.84685 -10.67862 -10.47035 -10.41908 -10.04757 -9.51359 -9.19646 -8.99440 -8.87154 -8.59819 -8.25554 -8.15406 -5.91285 -3.92299 1.36435 1.47559 2.52025 3.00982 3.39195 3.42338 3.46407 3.79660 4.21783 4.42340 4.47239 4.53897 4.63032 4.91774 4.96817 5.05292 5.14324 5.20636 5.27704 5.44155 5.50655 5.52276 5.55615 5.60590 5.72524 5.73794 5.83303 5.96029 6.00525 6.02557 6.13439 6.42381 6.50268 6.58126 6.62931 6.71078 6.76711 6.86074 7.03273 7.08108 7.32865 7.37714 7.80050 7.94677 8.10461 8.21015 8.55557 9.14851 9.70916 11.20215 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.005306 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.500930 B = 5275.926823 C = 7374.887855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.098 4.098 11 C 0.050 3.950 12 N -0.500 5.500 13 C 0.082 3.918 14 H 0.091 0.909 15 C 0.478 3.522 16 O -0.474 6.474 17 O -0.526 6.526 18 C -0.114 4.114 19 C -0.134 4.134 20 C 0.113 3.887 21 H 0.095 0.905 22 C -0.093 4.093 23 C -0.107 4.107 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.010 0.990 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.407 0.593 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -20.903 2.797 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.136 4.136 11 C -0.077 4.077 12 N -0.224 5.224 13 C -0.028 4.028 14 H 0.109 0.891 15 C 0.317 3.683 16 O -0.357 6.357 17 O -0.338 6.338 18 C -0.152 4.152 19 C -0.172 4.172 20 C 0.006 3.994 21 H 0.113 0.887 22 C -0.094 4.094 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.128 4.128 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.822 -20.665 2.144 20.793 hybrid contribution 0.303 1.384 0.544 1.517 sum 1.125 -19.282 2.688 19.500 Atomic orbital electron populations 1.69961 1.05997 1.26484 1.51341 1.25012 0.94826 0.99115 0.95524 0.86682 0.79592 0.83244 0.78631 1.20231 1.21333 1.20341 1.21232 0.93042 0.91051 1.49907 0.92802 1.19058 0.93957 0.91561 0.96778 1.21630 0.98548 0.92236 1.01151 1.22839 0.93395 0.90617 1.00823 1.63430 1.32352 1.03767 1.22831 1.22045 0.91779 0.95418 0.93594 0.89103 1.23075 0.86149 0.79446 0.79589 1.90776 1.70336 1.36585 1.38048 1.84477 1.36689 1.70582 1.42091 1.22668 0.99124 0.91580 1.01873 1.22956 0.97914 0.99216 0.97158 1.21483 0.88875 0.89769 0.99287 0.88668 1.20058 0.95262 1.00083 0.93979 1.20979 0.93830 0.99266 0.98471 1.21098 0.94953 0.99775 0.97586 1.21134 0.99881 0.99642 0.93084 1.21106 0.93967 0.99942 0.98769 1.21003 0.95086 1.00314 0.96386 0.93115 0.96779 0.97152 0.94182 0.92251 0.90266 0.94291 0.73430 0.90123 0.89476 0.90070 0.90460 0.86486 0.86081 0.86251 0.86201 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -15.49 9.11 -34.44 -0.31 -15.80 16 8 H 0.05 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.66 4.97 -27.89 -0.14 0.52 16 10 C -0.10 -2.25 4.08 -26.73 -0.11 -2.36 16 11 C 0.05 0.91 3.42 -3.83 -0.01 0.90 16 12 N -0.50 -7.72 4.38 -218.27 -0.96 -8.68 16 13 C 0.08 1.11 2.73 -67.34 -0.18 0.93 16 14 H 0.09 1.22 7.51 -51.93 -0.39 0.83 16 15 C 0.48 7.33 6.69 36.01 0.24 7.57 16 16 O -0.47 -9.19 15.17 -18.75 -0.28 -9.48 16 17 O -0.53 -6.25 13.40 -39.25 -0.53 -6.77 16 18 C -0.11 -1.12 6.47 -24.59 -0.16 -1.28 16 19 C -0.13 -1.25 6.33 -24.91 -0.16 -1.40 16 20 C 0.11 1.38 3.63 -67.88 -0.25 1.13 16 21 H 0.10 1.12 7.91 -51.93 -0.41 0.71 16 22 C -0.09 -1.18 2.98 -104.63 -0.31 -1.49 16 23 C -0.11 -1.37 6.32 -39.59 -0.25 -1.62 16 24 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 25 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.11 -1.33 9.59 -39.58 -0.38 -1.71 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.93 6.08 -51.93 -0.32 0.62 16 32 H 0.06 1.47 8.10 -51.93 -0.42 1.05 16 33 H 0.08 1.54 6.43 -51.93 -0.33 1.20 16 34 H 0.04 0.70 5.34 -51.93 -0.28 0.42 16 35 H 0.41 3.31 9.10 45.56 0.41 3.73 16 36 H 0.08 0.78 8.05 -51.93 -0.42 0.37 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.69 6.68 -51.93 -0.35 0.34 16 40 H 0.12 1.42 6.76 -52.48 -0.35 1.07 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.28 7.96 -52.49 -0.42 0.86 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -35.31 351.71 -9.84 -45.14 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.77 Total: 2.56 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.31 Total: -18.52 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.22 Total: -35.87 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.81 Total: -16.25 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.31 -9.84 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.124 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds