Wall clock time and date at job start Tue Mar 31 2020 08:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99468 * 3 2 1 5 5 H 1.48497 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47232 * 119.99858 * 3 2 1 7 7 C 1.37882 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47004 * 55.00223 * 11 10 9 13 13 N 1.46899 * 109.47071 * 294.99960 * 11 10 9 14 14 C 1.46900 * 110.99797 * 155.00161 * 13 11 10 15 15 C 1.53775 * 113.61354 * 205.00258 * 14 13 11 16 16 C 1.53781 * 87.08182 * 220.01859 * 15 14 13 17 17 C 1.50702 * 113.61709 * 139.98083 * 16 15 14 18 18 O 1.20822 * 119.99854 * 1.25213 * 17 16 15 19 19 O 1.34234 * 119.99997 * 181.53048 * 17 16 15 20 20 C 1.53776 * 87.17280 * 25.38545 * 16 15 14 21 21 C 1.50704 * 109.47057 * 174.99976 * 11 10 9 22 22 C 1.38235 * 119.99936 * 79.72738 * 21 11 10 23 23 C 1.38235 * 119.99930 * 179.78557 * 22 21 11 24 24 C 1.38231 * 119.99882 * 0.44653 * 23 22 21 25 25 C 1.38233 * 120.00466 * 359.80659 * 24 23 22 26 26 C 1.38235 * 119.99924 * 259.99802 * 21 11 10 27 27 H 0.97000 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47015 * 60.00171 * 9 7 2 29 29 H 1.08994 * 109.47530 * 300.00364 * 9 7 2 30 30 H 1.09001 * 109.47148 * 59.99862 * 10 9 7 31 31 H 1.09002 * 109.47102 * 300.00379 * 10 9 7 32 32 H 1.00898 * 110.99835 * 31.04867 * 13 11 10 33 33 H 1.09005 * 112.90716 * 336.25153 * 14 13 11 34 34 H 1.09002 * 113.61877 * 105.46911 * 15 14 13 35 35 H 1.09002 * 113.61785 * 334.56363 * 15 14 13 36 36 H 1.09005 * 113.61515 * 270.80123 * 16 15 14 37 37 H 0.96695 * 116.99910 * 179.72143 * 19 17 16 38 38 H 1.09008 * 113.60760 * 89.16238 * 20 16 15 39 39 H 1.09003 * 113.61809 * 220.05863 * 20 16 15 40 40 H 1.08004 * 119.99832 * 0.02562 * 22 21 11 41 41 H 1.08003 * 120.00049 * 180.27091 * 23 22 21 42 42 H 1.08007 * 119.99803 * 179.83332 * 24 23 22 43 43 H 1.08000 * 120.00469 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.00075 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 1 0.7878 -5.0071 -0.8396 13 7 0.7291 -5.1183 1.2576 14 6 -0.4295 -6.0052 1.0876 15 6 -1.5640 -5.7356 2.0901 16 6 -1.7370 -7.2607 2.1844 17 6 -2.0077 -7.7522 3.5831 18 8 -2.0924 -6.9638 4.4946 19 8 -2.1491 -9.0665 3.8170 20 6 -0.2621 -7.3775 1.7650 21 6 2.4549 -6.1298 -0.1221 22 6 3.1533 -6.5662 0.9882 23 6 4.0440 -7.6173 0.8753 24 6 4.2431 -8.2260 -0.3498 25 6 3.5486 -7.7863 -1.4611 26 6 2.6546 -6.7380 -1.3473 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8726 -3.6040 0.8909 31 1 2.8713 -3.6047 -0.8890 32 1 0.4449 -4.2146 1.6050 33 1 -0.7670 -6.0688 0.0530 34 1 -2.4217 -5.2251 1.6521 35 1 -1.2259 -5.2763 3.0190 36 1 -2.4330 -7.6674 1.4507 37 1 -2.3176 -9.3341 4.7308 38 1 0.4327 -7.3679 2.6049 39 1 -0.0702 -8.1906 1.0649 40 1 3.0002 -6.0885 1.9446 41 1 4.5864 -7.9612 1.7436 42 1 4.9410 -9.0455 -0.4385 43 1 3.7038 -8.2621 -2.4181 44 1 2.1118 -6.3945 -2.2155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:16 Heat of formation + Delta-G solvation = -60.340146 kcal Electronic energy + Delta-G solvation = -24500.893696 eV Core-core repulsion = 20996.895049 eV Total energy + Delta-G solvation = -3503.998646 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72925 -39.35173 -38.25190 -36.21622 -35.65255 -33.01696 -30.79794 -30.51614 -30.30216 -26.81875 -25.72401 -25.44241 -23.48445 -22.32951 -21.45718 -20.92104 -19.78175 -19.22238 -18.23141 -17.08424 -16.65394 -16.25497 -15.88992 -15.27284 -15.24410 -14.80277 -14.63813 -14.46862 -13.91747 -13.39733 -13.23225 -13.08519 -12.54905 -12.52700 -12.44218 -12.28433 -12.01666 -11.74713 -11.61430 -11.33586 -11.15532 -10.92756 -10.89230 -10.77268 -10.63722 -10.49774 -10.44188 -10.23114 -9.80256 -9.42214 -9.18158 -8.65919 -8.38881 -8.32804 -8.15709 -6.03253 -4.05420 1.62088 1.68242 2.10432 2.93801 3.32500 3.36971 3.39687 4.05094 4.33233 4.43992 4.49603 4.51894 4.77954 4.90130 5.11427 5.16932 5.21632 5.29089 5.33068 5.39496 5.48384 5.69163 5.76493 5.79532 5.82217 5.86812 5.95116 5.98849 6.08298 6.18571 6.26554 6.31890 6.37123 6.49559 6.66529 6.74389 6.82540 6.94690 6.99902 7.27590 7.46025 7.56787 7.73096 7.79396 7.80998 7.95422 8.38608 9.00634 9.59088 11.07789 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.004352 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.424407 B = 6432.819698 C = 8745.829737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.109 4.109 11 C 0.123 3.877 12 H 0.050 0.950 13 N -0.670 5.670 14 C 0.067 3.933 15 C -0.123 4.123 16 C -0.113 4.113 17 C 0.489 3.511 18 O -0.513 6.513 19 O -0.518 6.518 20 C -0.103 4.103 21 C -0.057 4.057 22 C -0.087 4.087 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.122 4.122 27 H 0.261 0.739 28 H 0.013 0.987 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.360 0.640 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.406 0.594 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -19.636 1.926 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.147 4.147 11 C 0.013 3.987 12 H 0.068 0.932 13 N -0.305 5.305 14 C -0.044 4.044 15 C -0.161 4.161 16 C -0.133 4.133 17 C 0.332 3.668 18 O -0.400 6.400 19 O -0.330 6.330 20 C -0.141 4.141 21 C -0.058 4.058 22 C -0.105 4.105 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.140 4.140 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.247 -19.621 2.026 19.727 hybrid contribution -0.308 1.238 0.064 1.277 sum -0.555 -18.383 2.090 18.510 Atomic orbital electron populations 1.69937 1.06025 1.26756 1.50711 1.24999 0.94831 0.99218 0.95216 0.86668 0.79611 0.83145 0.78657 1.20275 1.21309 1.20197 1.21168 0.93034 0.90928 1.50750 0.92714 1.19126 0.93937 0.91566 0.96844 1.21845 0.99260 0.92165 1.01426 1.20674 0.93690 0.93630 0.90707 0.93179 1.60555 1.22698 1.18561 1.28652 1.22944 0.90138 0.93844 0.97425 1.23268 0.99132 0.92356 1.01334 1.22410 1.01225 0.98900 0.90762 1.23428 0.71644 0.79546 0.92209 1.90725 1.46460 1.56413 1.46424 1.84567 1.83730 1.27269 1.37433 1.23053 0.91777 0.98236 1.01069 1.20024 0.96928 0.95926 0.92939 1.21034 0.94632 0.95741 0.99108 1.21143 0.99102 0.97210 0.97272 1.21022 1.00375 1.00453 0.93272 1.21001 0.97512 0.97649 0.98256 1.21046 0.99202 0.96496 0.97291 0.92944 0.96855 0.96506 0.92210 0.92550 0.81544 0.90505 0.90316 0.87749 0.86037 0.73586 0.88913 0.90770 0.85410 0.86773 0.86952 0.86776 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.54 4.80 -27.89 -0.13 0.41 16 10 C -0.11 -2.15 4.72 -26.73 -0.13 -2.28 16 11 C 0.12 1.98 2.24 -68.86 -0.15 1.83 16 12 H 0.05 0.83 7.33 -51.93 -0.38 0.45 16 13 N -0.67 -10.13 5.62 -100.01 -0.56 -10.69 16 14 C 0.07 0.86 4.01 -66.81 -0.27 0.59 16 15 C -0.12 -1.53 6.97 -25.92 -0.18 -1.71 16 16 C -0.11 -1.20 4.25 -90.96 -0.39 -1.59 16 17 C 0.49 5.72 7.85 36.01 0.28 6.00 16 18 O -0.51 -7.69 16.67 -18.75 -0.31 -8.01 16 19 O -0.52 -4.66 13.42 -39.27 -0.53 -5.18 16 20 C -0.10 -1.16 7.44 -25.83 -0.19 -1.35 16 21 C -0.06 -0.85 4.82 -104.62 -0.50 -1.35 16 22 C -0.09 -1.23 9.32 -39.58 -0.37 -1.60 16 23 C -0.13 -1.62 10.05 -39.59 -0.40 -2.02 16 24 C -0.13 -1.58 10.05 -39.59 -0.40 -1.97 16 25 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 26 C -0.12 -1.66 9.67 -39.58 -0.38 -2.05 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.36 6.15 6.29 -39.29 -0.25 5.90 16 33 H 0.08 0.97 7.48 -51.93 -0.39 0.58 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.48 7.45 -51.93 -0.39 1.10 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.41 1.96 9.10 45.56 0.41 2.37 16 38 H 0.09 1.15 8.09 -51.92 -0.42 0.73 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.13 1.86 7.73 -52.48 -0.41 1.46 16 41 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -31.47 367.68 -10.08 -41.55 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.92 Total: 8.00 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -4.02 Total: -22.15 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.17 Total: -36.21 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.84 Total: -13.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.47 -10.08 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.785 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds