Wall clock time and date at job start Tue Mar 31 2020 08:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47151 * 270.00550 * 3 2 1 5 5 H 1.48507 * 109.46730 * 30.00471 * 3 2 1 6 6 H 1.48497 * 109.47415 * 149.99993 * 3 2 1 7 7 C 1.37886 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99652 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46625 * 181.90117 * 9 7 2 11 11 H 1.08999 * 109.47330 * 54.29334 * 10 9 7 12 12 N 1.46903 * 109.46763 * 174.29170 * 10 9 7 13 13 C 1.46905 * 110.99790 * 274.00371 * 12 10 9 14 14 C 1.53780 * 113.61678 * 253.34698 * 13 12 10 15 15 C 1.53777 * 87.08300 * 220.02407 * 14 13 12 16 16 C 1.53005 * 113.60871 * 270.88462 * 15 14 13 17 17 C 1.50699 * 109.46939 * 272.49364 * 16 15 14 18 18 O 1.20828 * 120.00233 * 0.02562 * 17 16 15 19 19 O 1.34234 * 119.99743 * 180.02562 * 17 16 15 20 20 C 1.53779 * 113.61268 * 155.84998 * 13 12 10 21 21 C 1.50696 * 109.47041 * 294.28770 * 10 9 7 22 22 C 1.38230 * 120.00468 * 279.72417 * 21 10 9 23 23 C 1.38231 * 120.00170 * 179.79124 * 22 21 10 24 24 C 1.38231 * 120.00039 * 0.44408 * 23 22 21 25 25 C 1.38234 * 119.99970 * 359.80821 * 24 23 22 26 26 C 1.38231 * 120.00032 * 359.97438 * 25 24 23 27 27 H 0.97000 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47215 * 61.90587 * 9 7 2 29 29 H 1.08999 * 109.47523 * 301.90061 * 9 7 2 30 30 H 1.00899 * 110.99955 * 150.05332 * 12 10 9 31 31 H 1.09000 * 112.84939 * 24.65499 * 13 12 10 32 32 H 1.09004 * 113.61087 * 334.56675 * 14 13 12 33 33 H 1.08991 * 113.61748 * 105.46809 * 14 13 12 34 34 H 1.08998 * 113.62032 * 139.98367 * 15 14 13 35 35 H 1.08996 * 109.47097 * 32.49798 * 16 15 14 36 36 H 1.09005 * 109.46731 * 152.49747 * 16 15 14 37 37 H 0.96698 * 116.99577 * 180.02562 * 19 17 16 38 38 H 1.09003 * 113.61458 * 254.53406 * 20 13 12 39 39 H 1.09001 * 113.61795 * 25.43419 * 20 13 12 40 40 H 1.08005 * 119.99954 * 0.02562 * 22 21 10 41 41 H 1.08008 * 120.00212 * 180.28116 * 23 22 21 42 42 H 1.08009 * 120.00272 * 179.83972 * 24 23 22 43 43 H 1.08007 * 120.00139 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00298 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6358 -0.0495 11 1 3.5768 -3.1501 -0.9014 12 7 5.4840 -2.6334 -0.1878 13 6 5.8791 -2.5367 -1.5994 14 6 6.4269 -3.8522 -2.1774 15 6 7.4738 -3.0008 -2.9148 16 6 7.0147 -2.5242 -4.2943 17 6 7.3518 -3.5706 -5.3251 18 8 7.9024 -4.5928 -4.9907 19 8 7.0404 -3.3669 -6.6149 20 6 7.2859 -1.9514 -1.8066 21 6 3.6384 -3.3470 1.2226 22 6 4.3872 -3.1629 2.3699 23 6 4.0332 -3.8120 3.5379 24 6 2.9359 -4.6524 3.5563 25 6 2.1901 -4.8406 2.4077 26 6 2.5414 -4.1880 1.2408 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.7103 0.9054 29 1 3.8746 -0.6508 -0.8736 30 1 5.8895 -3.4491 0.2461 31 1 5.1158 -2.0693 -2.2215 32 1 6.8546 -4.5150 -1.4251 33 1 5.7297 -4.3604 -2.8434 34 1 8.4681 -3.4472 -2.9294 35 1 5.9372 -2.3602 -4.2820 36 1 7.5213 -1.5919 -4.5438 37 1 7.2763 -4.0667 -7.2391 38 1 7.2821 -0.9249 -2.1733 39 1 7.9485 -2.0944 -0.9530 40 1 5.2466 -2.5089 2.3547 41 1 4.6156 -3.6646 4.4355 42 1 2.6608 -5.1616 4.4682 43 1 1.3329 -5.4976 2.4219 44 1 1.9591 -4.3354 0.3433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:19 Heat of formation + Delta-G solvation = -54.857854 kcal Electronic energy + Delta-G solvation = -24510.024508 eV Core-core repulsion = 21006.263592 eV Total energy + Delta-G solvation = -3503.760916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65915 -39.38906 -38.58009 -36.30868 -35.25647 -32.61560 -31.16633 -30.35137 -29.31580 -28.80926 -25.60805 -24.66409 -23.15254 -22.11074 -21.93575 -21.34313 -19.39956 -18.70878 -18.19770 -16.96069 -16.86120 -16.33205 -16.20215 -15.33483 -15.23132 -14.57810 -14.45230 -14.00334 -13.64590 -13.43476 -13.31689 -13.08587 -12.80148 -12.59559 -12.43253 -12.35449 -12.12866 -11.87251 -11.69058 -11.52320 -11.28619 -11.15298 -10.80164 -10.72273 -10.52189 -10.41505 -10.18668 -10.06311 -9.85784 -9.72134 -9.14657 -8.50698 -8.33492 -8.10334 -7.88027 -6.01120 -3.98147 1.94033 1.97354 2.02958 2.84422 3.32427 3.40838 3.47070 4.32633 4.42819 4.48743 4.53437 4.59635 4.67947 5.04500 5.09824 5.30521 5.32072 5.36754 5.38362 5.42485 5.47873 5.51600 5.66152 5.76639 5.81764 5.95603 6.01240 6.08341 6.11254 6.19616 6.20116 6.28861 6.38266 6.45941 6.60613 6.70049 6.96017 7.02084 7.15057 7.20278 7.30741 7.57762 7.65880 7.69723 7.83002 7.90188 8.56007 9.04013 9.61842 11.12112 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.004399 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.558390 B = 6362.837984 C = 7993.443199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.008 3.992 10 C 0.135 3.865 11 H 0.047 0.953 12 N -0.675 5.675 13 C 0.069 3.931 14 C -0.159 4.159 15 C -0.105 4.105 16 C -0.099 4.099 17 C 0.479 3.521 18 O -0.515 6.515 19 O -0.520 6.520 20 C -0.120 4.120 21 C -0.052 4.052 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.097 4.097 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.014 0.986 30 H 0.335 0.665 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.408 0.592 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 -7.643 -4.924 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.030 4.030 10 C 0.027 3.973 11 H 0.065 0.935 12 N -0.305 5.305 13 C -0.042 4.042 14 C -0.199 4.199 15 C -0.124 4.124 16 C -0.136 4.136 17 C 0.322 3.678 18 O -0.403 6.403 19 O -0.331 6.331 20 C -0.159 4.159 21 C -0.052 4.052 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.228 -6.810 -4.416 16.380 hybrid contribution 0.078 -0.369 -0.728 0.820 sum 14.305 -7.179 -5.144 16.812 Atomic orbital electron populations 1.69909 1.06267 1.26729 1.51390 1.24953 0.94630 0.98938 0.94675 0.86849 0.80622 0.83898 0.78393 1.20466 1.21586 1.18785 1.21132 0.89327 0.94536 1.50470 0.90757 1.19533 0.96355 0.90161 0.96922 1.20590 0.85221 0.98552 0.92935 0.93474 1.60592 1.10368 1.46023 1.13485 1.23128 0.96361 0.95038 0.89652 1.23723 0.98244 0.97658 1.00236 1.22016 1.00268 0.98613 0.91462 1.21250 1.04959 0.96668 0.90727 1.23619 0.74506 0.87516 0.82176 1.90718 1.39532 1.28895 1.81157 1.84566 1.77414 1.51626 1.19542 1.23127 0.97553 0.97971 0.97208 1.19874 0.94969 0.94746 0.95647 1.20974 1.00269 0.99263 0.92196 1.21015 0.97760 0.98182 0.97742 1.20972 0.96495 1.00003 0.97792 1.21017 0.99476 1.00479 0.93257 1.21021 0.96251 0.96045 0.98283 0.92867 0.95925 0.96744 0.84608 0.88153 0.89806 0.91869 0.89455 0.87109 0.87209 0.73355 0.91148 0.89283 0.85827 0.86946 0.87084 0.86836 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.72 27.43 -169.99 -4.66 17.05 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.37 6.60 56.52 0.37 -6.00 16 7 C -0.52 -14.21 9.17 -34.44 -0.32 -14.52 16 8 H 0.07 2.18 6.75 -52.49 -0.35 1.82 16 9 C 0.01 0.19 3.74 -27.88 -0.10 0.09 16 10 C 0.14 2.56 2.10 -68.86 -0.14 2.42 16 11 H 0.05 0.92 7.68 -51.93 -0.40 0.52 16 12 N -0.68 -10.43 5.82 -100.10 -0.58 -11.02 16 13 C 0.07 0.93 3.49 -66.90 -0.23 0.69 16 14 C -0.16 -1.89 7.23 -25.92 -0.19 -2.08 16 15 C -0.10 -1.09 3.34 -89.81 -0.30 -1.39 16 16 C -0.10 -0.92 5.49 -27.88 -0.15 -1.07 16 17 C 0.48 5.00 8.33 36.01 0.30 5.30 16 18 O -0.52 -6.91 16.52 -18.75 -0.31 -7.22 16 19 O -0.52 -4.32 13.42 -39.27 -0.53 -4.85 16 20 C -0.12 -1.34 7.47 -25.92 -0.19 -1.54 16 21 C -0.05 -0.97 4.26 -104.63 -0.45 -1.41 16 22 C -0.11 -1.87 8.98 -39.59 -0.36 -2.22 16 23 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 24 C -0.13 -2.07 10.05 -39.59 -0.40 -2.47 16 25 C -0.12 -2.06 10.05 -39.59 -0.40 -2.46 16 26 C -0.10 -1.81 8.68 -39.58 -0.34 -2.15 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.55 7.33 -51.93 -0.38 0.17 16 29 H 0.01 0.33 7.07 -51.93 -0.37 -0.03 16 30 H 0.34 4.71 7.41 -39.29 -0.29 4.42 16 31 H 0.10 1.48 7.14 -51.93 -0.37 1.11 16 32 H 0.08 0.97 7.83 -51.93 -0.41 0.57 16 33 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 35 H 0.11 1.02 7.39 -51.93 -0.38 0.64 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.41 1.71 9.10 45.56 0.41 2.13 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.12 2.02 7.71 -52.48 -0.40 1.61 16 41 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 44 H 0.12 2.20 7.82 -52.49 -0.41 1.79 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -33.05 361.72 -9.50 -42.55 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.87 Total: 8.22 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -3.77 Total: -23.33 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.19 Total: -37.87 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.84 Total: -12.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.66 Total: 17.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.05 -9.50 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.307 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds