Wall clock time and date at job start Tue Mar 31 2020 08:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48502 * 109.47082 * 240.00252 * 3 2 1 5 5 H 1.48503 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47171 * 120.00283 * 3 2 1 7 7 C 1.37877 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46992 * 54.99634 * 10 9 7 12 12 N 1.46897 * 109.46854 * 295.00145 * 10 9 7 13 13 C 1.46901 * 111.00090 * 155.00154 * 12 10 9 14 14 C 1.53779 * 113.61531 * 204.99731 * 13 12 10 15 15 C 1.53781 * 87.07930 * 220.02015 * 14 13 12 16 16 C 1.53006 * 113.61523 * 139.98386 * 15 14 13 17 17 C 1.50698 * 109.47184 * 174.99998 * 16 15 14 18 18 O 1.20825 * 119.99963 * 359.97438 * 17 16 15 19 19 O 1.34225 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.53776 * 87.08322 * 25.43292 * 15 14 13 21 21 C 1.50696 * 109.46813 * 174.99764 * 10 9 7 22 22 C 1.38239 * 119.99724 * 79.72824 * 21 10 9 23 23 C 1.38238 * 119.99437 * 179.80664 * 22 21 10 24 24 C 1.38233 * 120.00261 * 0.39795 * 23 22 21 25 25 C 1.38234 * 120.00150 * 359.85409 * 24 23 22 26 26 C 1.38233 * 119.99785 * 359.95782 * 25 24 23 27 27 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46882 * 59.99866 * 9 7 2 29 29 H 1.09001 * 109.46994 * 300.00279 * 9 7 2 30 30 H 1.00908 * 110.99869 * 278.95463 * 12 10 9 31 31 H 1.09001 * 112.84730 * 336.19766 * 13 12 10 32 32 H 1.08996 * 113.61570 * 105.47008 * 14 13 12 33 33 H 1.09000 * 113.61317 * 334.56008 * 14 13 12 34 34 H 1.09003 * 113.61520 * 270.79636 * 15 14 13 35 35 H 1.09001 * 109.47002 * 294.99402 * 16 15 14 36 36 H 1.08993 * 109.46955 * 54.99840 * 16 15 14 37 37 H 0.96708 * 116.99703 * 179.97438 * 19 17 16 38 38 H 1.09004 * 113.61654 * 89.12187 * 20 15 14 39 39 H 1.09005 * 113.61592 * 220.01700 * 20 15 14 40 40 H 1.07992 * 120.00254 * 359.97438 * 22 21 10 41 41 H 1.08003 * 119.99807 * 180.23063 * 23 22 21 42 42 H 1.08002 * 120.00216 * 179.83862 * 24 23 22 43 43 H 1.07996 * 119.99823 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.00218 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9293 -3.5552 0.8412 12 7 3.0082 -3.6539 -1.2557 13 6 4.3093 -4.3142 -1.0852 14 6 5.3758 -3.8419 -2.0874 15 6 5.8246 -5.3098 -2.1814 16 6 6.1866 -5.7503 -3.6012 17 6 6.7271 -7.1567 -3.5684 18 8 6.8143 -7.7459 -2.5172 19 8 7.1116 -7.7546 -4.7069 20 6 4.3948 -5.6916 -1.7636 21 6 1.4957 -4.9637 0.1234 22 6 0.8892 -5.5204 -0.9872 23 6 0.2051 -6.7163 -0.8743 24 6 0.1205 -7.3513 0.3507 25 6 0.7225 -6.7919 1.4622 26 6 1.4099 -5.5980 1.3486 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.4808 -4.0814 -2.0023 31 1 4.6518 -4.3136 -0.0504 32 1 6.1256 -3.1833 -1.6491 33 1 4.9598 -3.4523 -3.0164 34 1 6.5829 -5.5824 -1.4474 35 1 5.2966 -5.7178 -4.2297 36 1 6.9434 -5.0796 -4.0078 37 1 7.4521 -8.6569 -4.6356 38 1 3.7105 -5.8077 -2.6041 39 1 4.3525 -6.5264 -1.0639 40 1 0.9521 -5.0224 -1.9434 41 1 -0.2656 -7.1532 -1.7426 42 1 -0.4162 -8.2843 0.4394 43 1 0.6560 -7.2878 2.4193 44 1 1.8806 -5.1612 2.2169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:22 Heat of formation + Delta-G solvation = -55.666980 kcal Electronic energy + Delta-G solvation = -24574.641263 eV Core-core repulsion = 21070.845260 eV Total energy + Delta-G solvation = -3503.796002 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57366 -39.48088 -38.48596 -36.30341 -35.21313 -32.55874 -31.21126 -30.58618 -29.39841 -28.24263 -25.45224 -24.60014 -23.28244 -22.31211 -21.83785 -20.68261 -19.92422 -19.16979 -18.17328 -16.89352 -16.70395 -16.17107 -16.03050 -15.37455 -15.09913 -14.73728 -14.42899 -14.31396 -13.72743 -13.47610 -13.13509 -12.96382 -12.80946 -12.52815 -12.26111 -12.07590 -12.03216 -11.85489 -11.70370 -11.33835 -11.10169 -10.94295 -10.80909 -10.73182 -10.57726 -10.53998 -10.19209 -10.15872 -10.02965 -9.57740 -8.99676 -8.59535 -8.25078 -8.17457 -7.64336 -5.87050 -3.85394 1.72795 1.73971 2.04385 2.86839 3.41596 3.45542 3.48659 4.14507 4.52433 4.56901 4.57687 4.70442 4.98726 5.06179 5.18482 5.19312 5.24613 5.32034 5.37476 5.41420 5.44951 5.47763 5.51092 5.83838 5.86070 5.90057 5.91745 6.02900 6.12423 6.23370 6.27847 6.33205 6.38432 6.40574 6.55036 6.78374 6.79547 6.86471 7.01350 7.35432 7.56541 7.68104 7.70386 7.99649 8.04984 8.15718 8.57449 9.19519 9.75824 11.24792 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.004469 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.080675 B = 6263.426113 C = 8425.597969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.051 3.949 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.490 4.490 8 H 0.059 0.941 9 C 0.042 3.958 10 C 0.128 3.872 11 H 0.074 0.926 12 N -0.647 5.647 13 C 0.074 3.926 14 C -0.121 4.121 15 C -0.105 4.105 16 C -0.102 4.102 17 C 0.476 3.524 18 O -0.513 6.513 19 O -0.522 6.522 20 C -0.160 4.160 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.117 4.117 27 H 0.258 0.742 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.335 0.665 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.279 -15.714 -6.208 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.004 3.996 10 C 0.019 3.981 11 H 0.092 0.908 12 N -0.275 5.275 13 C -0.038 4.038 14 C -0.159 4.159 15 C -0.124 4.124 16 C -0.139 4.139 17 C 0.319 3.681 18 O -0.401 6.401 19 O -0.334 6.334 20 C -0.199 4.199 21 C -0.088 4.088 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.156 4.156 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.155 0.845 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.237 -14.674 -5.852 18.300 hybrid contribution 0.281 -0.717 0.056 0.773 sum 9.519 -15.392 -5.796 19.003 Atomic orbital electron populations 1.69961 1.05991 1.26354 1.52056 1.24992 0.94751 0.99021 0.96053 0.86686 0.79479 0.83465 0.78447 1.20350 1.21688 1.20557 1.21078 0.93158 0.90092 1.48499 0.92227 1.19094 0.92781 0.90490 0.97209 1.21045 0.95023 0.90755 0.91298 0.90761 1.60567 1.03373 1.56753 1.06835 1.22956 0.91648 0.90817 0.98347 1.23142 0.98150 0.93849 1.00754 1.22358 0.97995 0.97888 0.94111 1.21446 1.03065 0.88948 1.00463 1.23756 0.73825 0.89749 0.80771 1.90724 1.51197 1.65976 1.32208 1.84565 1.76238 1.34817 1.37814 1.23769 0.95715 0.99523 1.00903 1.21162 0.97310 0.97191 0.93181 1.20921 0.98312 0.95685 0.98715 1.21036 0.99536 0.95825 0.97355 1.20991 1.01188 1.00154 0.93245 1.21069 0.98350 0.96257 0.98199 1.21071 0.99901 0.95259 0.97380 0.93260 0.96341 0.96394 0.84465 0.89030 0.91252 0.89381 0.88425 0.87538 0.87553 0.73483 0.90347 0.91757 0.86365 0.86744 0.86897 0.86743 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.49 -13.49 8.84 -34.44 -0.30 -13.80 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.04 1.04 4.63 -27.88 -0.13 0.91 16 10 C 0.13 2.51 2.16 -68.87 -0.15 2.36 16 11 H 0.07 1.48 7.33 -51.93 -0.38 1.10 16 12 N -0.65 -11.32 6.07 -100.10 -0.61 -11.92 16 13 C 0.07 1.07 4.05 -66.90 -0.27 0.80 16 14 C -0.12 -1.50 7.44 -25.92 -0.19 -1.69 16 15 C -0.10 -1.16 3.15 -89.81 -0.28 -1.44 16 16 C -0.10 -0.91 5.65 -27.88 -0.16 -1.07 16 17 C 0.48 4.90 8.33 36.00 0.30 5.20 16 18 O -0.51 -7.01 16.51 -18.75 -0.31 -7.32 16 19 O -0.52 -4.12 13.42 -39.24 -0.53 -4.64 16 20 C -0.16 -2.02 7.25 -25.92 -0.19 -2.21 16 21 C -0.09 -1.51 4.82 -104.62 -0.50 -2.01 16 22 C -0.12 -1.89 9.11 -39.58 -0.36 -2.25 16 23 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 24 C -0.14 -1.89 10.05 -39.58 -0.40 -2.29 16 25 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 26 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.33 5.49 5.83 -39.29 -0.23 5.26 16 31 H 0.09 1.39 7.47 -51.93 -0.39 1.01 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.10 1.17 7.68 -51.93 -0.40 0.77 16 35 H 0.11 0.85 7.84 -51.93 -0.41 0.45 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 1.59 9.10 45.56 0.41 2.00 16 38 H 0.08 0.95 7.58 -51.93 -0.39 0.55 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.12 1.82 6.53 -52.49 -0.34 1.47 16 41 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.12 1.81 8.04 -52.49 -0.42 1.39 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -32.93 367.27 -10.00 -42.93 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.89 Total: 7.65 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -3.91 Total: -22.63 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.13 Total: -38.37 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.84 Total: -11.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.93 -10.00 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.738 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds