Wall clock time and date at job start Tue Mar 31 2020 08:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48500 * 109.47167 * 239.99757 * 3 2 1 5 5 H 1.48494 * 109.47466 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46970 * 120.00427 * 3 2 1 7 7 C 1.38815 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99471 * 157.87369 * 7 2 1 9 9 N 1.36931 * 119.99857 * 337.87622 * 7 2 1 10 10 C 1.46505 * 119.99799 * 145.85947 * 9 7 2 11 11 C 1.53003 * 109.46810 * 269.99438 * 10 9 7 12 12 C 1.50699 * 109.46725 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00317 * 0.02562 * 12 11 10 14 14 O 1.34231 * 119.99502 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00222 * 325.85190 * 9 7 2 16 16 C 1.50709 * 109.47325 * 266.22038 * 15 9 7 17 17 C 1.38233 * 119.99787 * 267.86292 * 16 15 9 18 18 C 1.38240 * 119.99611 * 179.78581 * 17 16 15 19 19 C 1.38230 * 120.00003 * 0.44733 * 18 17 16 20 20 C 1.50700 * 120.00026 * 179.83473 * 19 18 17 21 21 C 1.53788 * 113.61380 * 37.47293 * 20 19 18 22 22 C 1.53781 * 87.07810 * 220.02318 * 21 20 19 23 23 C 1.53780 * 87.08653 * 25.42907 * 22 21 20 24 24 C 1.38241 * 120.00023 * 359.80590 * 19 18 17 25 25 C 1.38227 * 119.99857 * 88.13910 * 16 15 9 26 26 H 0.96997 * 119.99569 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47215 * 29.99488 * 10 9 7 28 28 H 1.09004 * 109.47145 * 149.99604 * 10 9 7 29 29 H 1.09003 * 109.47272 * 300.00015 * 11 10 9 30 30 H 1.08995 * 109.46954 * 59.99989 * 11 10 9 31 31 H 0.96703 * 116.99769 * 179.97438 * 14 12 11 32 32 H 1.08999 * 109.47259 * 26.21641 * 15 9 7 33 33 H 1.09002 * 109.47465 * 146.22215 * 15 9 7 34 34 H 1.08001 * 120.00015 * 0.02562 * 17 16 15 35 35 H 1.07998 * 119.99578 * 180.28169 * 18 17 16 36 36 H 1.09001 * 112.85022 * 168.78008 * 20 19 18 37 37 H 1.08997 * 113.61230 * 334.56804 * 21 20 19 38 38 H 1.08995 * 113.61302 * 105.47246 * 21 20 19 39 39 H 1.09001 * 113.61177 * 270.88381 * 22 21 20 40 40 H 1.08993 * 113.61858 * 139.98298 * 22 21 20 41 41 H 1.08992 * 113.62195 * 220.02021 * 23 22 21 42 42 H 1.09002 * 113.68863 * 89.12641 * 23 22 21 43 43 H 1.07997 * 119.99917 * 180.02562 * 24 19 18 44 44 H 1.08004 * 120.00093 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0305 -1.2365 -0.3528 9 7 1.4011 -2.3446 0.4456 10 6 1.7189 -3.6338 -0.1735 11 6 0.7647 -3.8872 -1.3424 12 6 1.0913 -5.2137 -1.9788 13 8 1.9941 -5.8874 -1.5420 14 8 0.3783 -5.6471 -3.0303 15 6 0.4317 -2.2776 1.5419 16 6 1.1335 -2.5395 2.8497 17 6 1.2013 -3.8254 3.3523 18 6 1.8488 -4.0662 4.5497 19 6 2.4205 -3.0198 5.2489 20 6 3.1232 -3.2818 6.5561 21 6 3.9145 -4.6003 6.5766 22 6 3.4090 -4.7898 8.0166 23 6 2.2143 -3.9018 7.6306 24 6 2.3481 -1.7330 4.7489 25 6 1.7044 -1.4929 3.5494 26 1 -0.4849 0.8401 0.0004 27 1 2.7456 -3.6179 -0.5394 28 1 1.6084 -4.4283 0.5645 29 1 -0.2619 -3.9031 -0.9765 30 1 0.8752 -3.0927 -2.0803 31 1 0.6251 -6.5037 -3.4049 32 1 -0.0224 -1.2870 1.5654 33 1 -0.3429 -3.0290 1.3885 34 1 0.7517 -4.6425 2.8076 35 1 1.9057 -5.0716 4.9400 36 1 3.6938 -2.4230 6.9095 37 1 3.5361 -5.3475 5.8792 38 1 4.9935 -4.4630 6.5072 39 1 4.0589 -4.3441 8.7697 40 1 3.1316 -5.8176 8.2503 41 1 1.9208 -3.2007 8.4118 42 1 1.3703 -4.4569 7.2212 43 1 2.7951 -0.9156 5.2950 44 1 1.6478 -0.4876 3.1587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:38 Heat of formation + Delta-G solvation = -39.951576 kcal Electronic energy + Delta-G solvation = -24532.709638 eV Core-core repulsion = 21029.595106 eV Total energy + Delta-G solvation = -3503.114531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.81728 -39.66392 -37.71462 -36.02351 -35.49177 -32.09361 -31.50178 -30.26550 -29.36827 -26.58370 -25.58355 -24.84885 -23.91049 -22.19715 -21.69226 -20.52121 -19.75595 -18.92084 -17.74011 -16.95883 -16.27366 -15.97738 -15.57371 -15.39971 -14.89416 -14.48768 -14.22681 -13.75755 -13.70268 -13.37524 -12.89338 -12.83875 -12.81856 -12.44118 -12.38793 -12.19766 -11.77649 -11.49702 -11.29814 -11.16031 -11.01060 -10.81733 -10.79119 -10.52815 -10.41836 -10.31607 -10.19006 -10.11251 -10.03454 -9.94291 -9.83363 -8.60539 -8.25766 -7.81133 -6.78742 -5.92370 -3.44795 1.99460 2.07205 2.63715 3.31459 3.38251 3.40312 3.51918 4.30629 4.44126 4.66283 4.74436 4.74943 5.10178 5.21938 5.34478 5.46384 5.51774 5.56010 5.67101 5.69927 5.71657 5.78827 5.82236 5.85925 5.92142 5.95729 6.08581 6.13111 6.22718 6.30524 6.36966 6.47790 6.51977 6.66787 6.72643 6.77827 6.80412 6.95787 7.14219 7.19362 7.41368 7.62156 7.72517 7.74237 8.27072 8.39016 9.05067 9.67386 10.23471 11.08948 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004647 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.729827 B = 6024.549569 C = 8138.655232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.570 5.570 10 C 0.161 3.839 11 C -0.131 4.131 12 C 0.478 3.522 13 O -0.528 6.528 14 O -0.525 6.525 15 C 0.170 3.830 16 C -0.074 4.074 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.067 4.067 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.095 4.095 26 H 0.258 0.742 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.398 0.602 32 H 0.111 0.889 33 H 0.032 0.968 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -8.076 8.356 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.187 4.187 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.081 0.919 9 N -0.288 5.288 10 C 0.034 3.966 11 C -0.172 4.172 12 C 0.322 3.678 13 O -0.417 6.417 14 O -0.336 6.336 15 C 0.045 3.955 16 C -0.077 4.077 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.096 4.096 20 C -0.085 4.085 21 C -0.172 4.172 22 C -0.182 4.182 23 C -0.169 4.169 24 C -0.140 4.140 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.487 -7.704 8.612 11.651 hybrid contribution 0.623 0.316 -0.384 0.797 sum 2.110 -7.388 8.229 11.258 Atomic orbital electron populations 1.69951 1.05476 1.26145 1.51098 1.25072 0.94995 0.98622 0.99986 0.86488 0.79318 0.83244 0.78538 1.20628 1.21511 1.20725 1.19076 0.94658 0.85668 1.39400 0.91869 1.43822 1.49587 1.02455 1.32981 1.20770 0.95899 0.88652 0.91256 1.22408 1.04398 0.89450 1.00930 1.24400 0.78265 0.88724 0.76442 1.90658 1.30740 1.57916 1.62336 1.84662 1.60689 1.41625 1.46592 1.20122 0.89752 1.03844 0.81790 1.21169 0.97202 0.92286 0.97017 1.21022 1.00398 0.96682 0.95870 1.20775 0.99650 0.97790 0.95820 1.19452 1.00513 0.93540 0.96057 1.21418 0.96760 0.97393 0.92919 1.23037 0.99834 0.97624 0.96739 1.22838 0.98259 0.99972 0.97088 1.22979 0.96979 0.98813 0.98101 1.20959 1.00561 0.95763 0.96758 1.21069 0.97009 0.99594 0.93743 0.93235 0.92842 0.93578 0.88574 0.87446 0.74506 0.87185 0.94943 0.87191 0.87324 0.89183 0.89705 0.91686 0.90472 0.91699 0.91758 0.89944 0.87325 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.45 11.32 55.49 0.63 -22.82 16 2 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 3 Si 0.90 20.53 29.61 -169.99 -5.03 15.50 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.61 9.49 -15.06 -0.14 -6.75 16 8 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 9 N -0.57 -13.25 2.43 -174.60 -0.43 -13.67 16 10 C 0.16 3.34 4.98 -4.04 -0.02 3.32 16 11 C -0.13 -2.42 6.14 -27.88 -0.17 -2.59 16 12 C 0.48 8.07 8.33 36.01 0.30 8.37 16 13 O -0.53 -10.11 16.74 -18.75 -0.31 -10.43 16 14 O -0.52 -7.19 13.42 -39.26 -0.53 -7.72 16 15 C 0.17 3.77 5.38 -5.19 -0.03 3.74 16 16 C -0.07 -1.49 5.46 -104.62 -0.57 -2.06 16 17 C -0.12 -2.17 9.61 -39.58 -0.38 -2.55 16 18 C -0.12 -1.96 8.61 -39.58 -0.34 -2.30 16 19 C -0.10 -1.49 5.29 -104.62 -0.55 -2.05 16 20 C -0.07 -0.83 3.98 -90.95 -0.36 -1.20 16 21 C -0.14 -1.51 7.46 -25.92 -0.19 -1.71 16 22 C -0.14 -1.38 8.08 -25.92 -0.21 -1.59 16 23 C -0.13 -1.43 7.55 -25.92 -0.20 -1.62 16 24 C -0.12 -2.11 9.71 -39.58 -0.38 -2.49 16 25 C -0.10 -1.89 9.71 -39.59 -0.38 -2.28 16 26 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.05 1.15 8.00 -51.93 -0.42 0.74 16 28 H 0.05 0.92 7.95 -51.93 -0.41 0.51 16 29 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 31 H 0.40 3.51 9.10 45.56 0.41 3.92 16 32 H 0.11 2.73 5.29 -51.93 -0.27 2.46 16 33 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 34 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.11 1.50 6.66 -52.49 -0.35 1.15 16 36 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.08 0.98 6.31 -51.93 -0.33 0.66 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 43 H 0.11 1.65 8.05 -52.49 -0.42 1.23 16 44 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -28.56 365.95 -9.84 -38.39 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.96 Total: 8.71 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.72 Total: -13.48 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.20 Total: -36.49 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.84 Total: -18.14 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.56 -9.84 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.558 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds