Wall clock time and date at job start Tue Mar 31 2020 07:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47291 * 299.99442 * 3 2 1 6 6 H 1.48500 * 109.47187 * 60.00004 * 3 2 1 7 7 C 1.38813 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 159.93764 * 7 2 1 9 9 N 1.36944 * 119.99540 * 339.94676 * 7 2 1 10 10 C 1.46496 * 120.00012 * 321.60508 * 9 7 2 11 11 C 1.53002 * 109.47384 * 270.00388 * 10 9 7 12 12 C 1.50695 * 109.46919 * 179.97438 * 11 10 9 13 13 C 1.37970 * 120.07497 * 100.61540 * 12 11 10 14 14 C 1.38337 * 120.15072 * 179.71736 * 13 12 11 15 15 C 1.38393 * 120.30264 * 0.27840 * 14 13 12 16 16 C 1.37923 * 120.15298 * 0.02562 * 15 14 13 17 17 C 1.39608 * 120.07853 * 280.90256 * 12 11 10 18 18 C 1.47725 * 120.15251 * 0.02562 * 17 12 11 19 19 O 1.21473 * 119.99717 * 358.00574 * 18 17 12 20 20 O 1.34708 * 120.00355 * 178.01470 * 18 17 12 21 21 C 1.46503 * 119.99651 * 141.61274 * 9 7 2 22 22 C 1.54262 * 110.03308 * 60.77395 * 21 9 7 23 23 C 1.54968 * 104.15872 * 217.13178 * 22 21 9 24 24 C 1.54889 * 102.77613 * 37.89245 * 23 22 21 25 25 C 1.53874 * 110.03181 * 303.55360 * 21 9 7 26 26 H 0.97003 * 120.00256 * 5.03225 * 1 2 3 27 27 H 1.09005 * 109.46694 * 150.00280 * 10 9 7 28 28 H 1.08994 * 109.46941 * 30.00659 * 10 9 7 29 29 H 1.09003 * 109.46567 * 60.00164 * 11 10 9 30 30 H 1.08997 * 109.46921 * 300.00391 * 11 10 9 31 31 H 1.07998 * 119.92355 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.85043 * 180.24831 * 14 13 12 33 33 H 1.08005 * 119.92168 * 179.97438 * 15 14 13 34 34 H 1.07996 * 120.07465 * 179.97438 * 16 15 14 35 35 H 0.96696 * 117.00222 * 180.02562 * 20 18 17 36 36 H 1.08998 * 110.01278 * 182.16667 * 21 9 7 37 37 H 1.08999 * 110.48791 * 335.78002 * 22 21 9 38 38 H 1.09006 * 110.48789 * 98.42665 * 22 21 9 39 39 H 1.08995 * 110.72175 * 279.57530 * 23 22 21 40 40 H 1.09001 * 110.91864 * 156.29694 * 23 22 21 41 41 H 1.08996 * 110.48395 * 203.40531 * 24 23 22 42 42 H 1.08998 * 110.60003 * 80.81326 * 24 23 22 43 43 H 1.08997 * 110.03353 * 238.57004 * 25 21 9 44 44 H 1.09001 * 110.03492 * 359.95632 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0411 -1.2306 -0.3203 9 7 1.3878 -2.3519 0.4077 10 6 0.4538 -2.3192 1.5359 11 6 1.2167 -2.5750 2.8372 12 6 0.2560 -2.5406 3.9977 13 6 -0.2033 -3.7185 4.5502 14 6 -1.0807 -3.6888 5.6193 15 6 -1.5084 -2.4793 6.1383 16 6 -1.0620 -1.2942 5.5916 17 6 -0.1761 -1.3169 4.5124 18 6 0.3060 -0.0517 3.9216 19 8 1.1080 -0.0740 3.0095 20 8 -0.1436 1.1269 4.3944 21 6 1.6561 -3.6148 -0.2848 22 6 3.1530 -3.9706 -0.1739 23 6 3.4956 -4.6009 -1.5476 24 6 2.6684 -3.7406 -2.5349 25 6 1.3478 -3.4689 -1.7853 26 1 -0.4851 0.8368 -0.0737 27 1 -0.3049 -3.0903 1.4019 28 1 -0.0259 -1.3416 1.5821 29 1 1.9754 -1.8038 2.9711 30 1 1.6965 -3.5526 2.7910 31 1 0.1262 -4.6658 4.1497 32 1 -1.4341 -4.6138 6.0506 33 1 -2.1938 -2.4633 6.9728 34 1 -1.3969 -0.3511 5.9974 35 1 0.2003 1.9278 3.9758 36 1 1.0499 -4.4121 0.1451 37 1 3.7474 -3.0722 -0.0076 38 1 3.3156 -4.6907 0.6282 39 1 3.1783 -5.6430 -1.5837 40 1 4.5613 -4.5155 -1.7600 41 1 2.4781 -4.2930 -3.4550 42 1 3.1832 -2.8048 -2.7524 43 1 0.5927 -4.1960 -2.0837 44 1 0.9978 -2.4588 -1.9981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:36 Heat of formation + Delta-G solvation = -48.022995 kcal Electronic energy + Delta-G solvation = -25971.844000 eV Core-core repulsion = 22468.379466 eV Total energy + Delta-G solvation = -3503.464534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.06028 -38.25085 -37.61104 -35.62473 -34.40404 -32.36174 -31.06080 -30.69970 -28.06530 -27.73742 -26.23645 -24.49036 -23.55302 -21.90660 -21.11794 -20.05149 -19.75354 -18.89685 -17.52697 -16.70085 -16.15862 -15.51915 -15.18973 -14.97545 -14.89709 -14.60452 -14.19361 -14.02267 -13.34543 -13.09404 -12.92949 -12.60250 -12.47209 -12.36237 -12.07315 -11.56044 -11.44341 -11.06810 -10.97552 -10.77886 -10.69084 -10.56736 -10.47569 -10.34196 -10.18449 -10.12350 -10.01279 -9.60975 -9.48148 -9.38291 -9.11167 -8.77448 -8.43604 -8.24858 -6.30031 -5.60413 -3.14248 1.07551 1.60538 3.12378 3.46075 3.51583 3.55362 3.57381 4.10220 4.63865 5.03776 5.07381 5.16125 5.37761 5.46673 5.51348 5.55748 5.58469 5.68402 5.81989 5.86766 6.05496 6.20924 6.23638 6.30994 6.31491 6.37727 6.49707 6.52562 6.60168 6.63173 6.66103 6.70764 6.74896 6.81567 6.88983 6.95525 7.05756 7.10586 7.11861 7.26954 7.49616 7.54207 7.93549 8.05123 8.56904 8.74842 9.40108 10.04314 10.60394 11.41913 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.006307 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.449733 B = 4438.556654 C = 6086.777866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.038 3.962 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.055 0.945 9 N -0.571 5.571 10 C 0.161 3.839 11 C -0.114 4.114 12 C 0.003 3.997 13 C -0.139 4.139 14 C -0.088 4.088 15 C -0.155 4.155 16 C -0.065 4.065 17 C -0.121 4.121 18 C 0.497 3.503 19 O -0.443 6.443 20 O -0.529 6.529 21 C 0.170 3.830 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.131 4.131 26 H 0.248 0.752 27 H 0.011 0.989 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.408 0.592 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.038 0.962 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -5.697 8.894 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.162 4.162 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.072 0.928 9 N -0.289 5.289 10 C 0.035 3.965 11 C -0.154 4.154 12 C 0.001 3.999 13 C -0.157 4.157 14 C -0.107 4.107 15 C -0.173 4.173 16 C -0.083 4.083 17 C -0.123 4.123 18 C 0.338 3.662 19 O -0.327 6.327 20 O -0.342 6.342 21 C 0.063 3.937 22 C -0.175 4.175 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.170 4.170 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.266 0.734 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.358 -5.918 8.837 10.723 hybrid contribution 0.567 1.380 -0.186 1.503 sum -0.791 -4.539 8.652 9.802 Atomic orbital electron populations 1.69882 1.05598 1.25096 1.52511 1.24954 0.94674 0.97899 0.98712 0.86362 0.79716 0.84785 0.76443 1.20627 1.22660 1.21703 1.18755 0.93393 0.84841 1.40464 0.92775 1.43869 1.51081 1.03325 1.30617 1.20915 0.90183 1.02561 0.82862 1.21785 0.98115 1.01757 0.93715 1.20395 0.94400 0.90810 0.94274 1.21032 0.99406 0.97796 0.97443 1.21313 0.95936 0.97870 0.95533 1.20985 1.02388 0.92315 1.01646 1.21390 0.94229 0.98770 0.93910 1.18950 1.03118 0.90570 0.99628 1.20930 0.80298 0.83738 0.81236 1.91115 1.30011 1.86772 1.24809 1.84461 1.69110 1.17036 1.63547 1.21034 0.92628 0.88801 0.91269 1.22857 1.00005 0.99777 0.94822 1.22434 0.98545 0.98294 0.96775 1.22246 0.97396 0.98998 0.96838 1.22555 0.95301 1.02404 0.96725 0.94146 0.97051 0.87532 0.88275 0.93504 0.85576 0.86066 0.85961 0.85150 0.73434 0.93785 0.90775 0.93730 0.92839 0.93070 0.93601 0.92017 0.94357 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.44 55.49 0.63 -24.54 16 2 C 0.04 1.03 3.97 -17.43 -0.07 0.97 16 3 Si 0.90 22.40 29.60 -169.99 -5.03 17.37 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.55 7.84 -15.06 -0.12 -6.67 16 8 H 0.05 1.50 6.82 -52.49 -0.36 1.14 16 9 N -0.57 -13.91 2.37 -164.39 -0.39 -14.30 16 10 C 0.16 3.81 4.77 -4.04 -0.02 3.79 16 11 C -0.11 -2.34 4.94 -27.88 -0.14 -2.48 16 12 C 0.00 0.05 5.17 -104.21 -0.54 -0.49 16 13 C -0.14 -2.04 9.66 -39.64 -0.38 -2.42 16 14 C -0.09 -1.10 10.04 -39.49 -0.40 -1.49 16 15 C -0.16 -1.92 10.03 -39.64 -0.40 -2.31 16 16 C -0.06 -0.93 9.62 -39.17 -0.38 -1.31 16 17 C -0.12 -2.13 5.87 -104.98 -0.62 -2.75 16 18 C 0.50 9.55 7.95 34.61 0.28 9.82 16 19 O -0.44 -10.12 11.46 -19.25 -0.22 -10.34 16 20 O -0.53 -8.44 12.68 -40.51 -0.51 -8.95 16 21 C 0.17 3.61 3.42 -66.81 -0.23 3.38 16 22 C -0.14 -2.57 6.42 -25.03 -0.16 -2.73 16 23 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 24 C -0.12 -2.08 6.83 -25.07 -0.17 -2.25 16 25 C -0.13 -2.69 6.26 -25.61 -0.16 -2.85 16 26 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 27 H 0.01 0.26 7.92 -51.93 -0.41 -0.15 16 28 H 0.11 2.83 3.85 -51.93 -0.20 2.63 16 29 H 0.10 2.28 5.93 -51.93 -0.31 1.97 16 30 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 31 H 0.13 1.65 8.03 -52.49 -0.42 1.23 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.13 1.67 7.61 -52.49 -0.40 1.27 16 35 H 0.41 5.31 9.11 45.56 0.42 5.73 16 36 H 0.04 0.90 7.82 -51.93 -0.41 0.49 16 37 H 0.07 1.58 6.52 -51.93 -0.34 1.24 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.09 7.24 -51.93 -0.38 1.72 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -30.17 350.71 -9.64 -39.81 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.74 Total: 7.65 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.67 Total: -11.99 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.24 Total: -38.84 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.73 Total: -19.29 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.17 -9.64 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.209 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds