Wall clock time and date at job start Tue Mar 31 2020 08:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47210 * 84.67936 * 3 2 1 5 5 H 1.48500 * 109.47157 * 324.67932 * 3 2 1 6 6 H 1.48504 * 109.46993 * 204.67768 * 3 2 1 7 7 C 1.39948 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99970 * 20.09886 * 7 2 1 9 9 C 1.41402 * 119.99923 * 200.09959 * 7 2 1 10 10 C 1.40711 * 120.24057 * 25.34816 * 9 7 2 11 11 C 1.37626 * 119.73773 * 179.71867 * 10 9 7 12 12 C 1.38627 * 120.24855 * 0.58320 * 11 10 9 13 13 C 1.50703 * 119.74982 * 179.69741 * 12 11 10 14 14 N 1.46904 * 109.46723 * 269.97559 * 13 12 11 15 15 C 1.46899 * 110.99744 * 179.97438 * 14 13 12 16 16 H 1.09006 * 109.47273 * 324.99786 * 15 14 13 17 17 C 1.53004 * 109.47470 * 85.00101 * 15 14 13 18 18 C 1.52992 * 109.46947 * 59.99623 * 17 15 14 19 19 C 1.52994 * 109.47407 * 60.00532 * 18 17 15 20 20 C 1.53006 * 109.46880 * 299.99947 * 19 18 17 21 21 C 1.52992 * 109.47057 * 59.99839 * 20 19 18 22 22 H 1.09000 * 109.47613 * 60.00395 * 21 20 19 23 23 C 1.50703 * 109.47275 * 179.97438 * 21 20 19 24 24 O 1.20824 * 119.99963 * 119.99382 * 23 21 20 25 25 O 1.34231 * 120.00079 * 300.00108 * 23 21 20 26 26 C 1.38635 * 120.50290 * 359.66652 * 12 11 10 27 27 C 1.37613 * 120.24630 * 0.05053 * 26 12 11 28 28 H 0.97006 * 120.00158 * 185.10977 * 1 2 3 29 29 H 1.07994 * 120.13347 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87342 * 180.27504 * 11 10 9 31 31 H 1.08997 * 109.47383 * 29.96998 * 13 12 11 32 32 H 1.09001 * 109.47345 * 149.97908 * 13 12 11 33 33 H 1.00903 * 110.99833 * 303.94726 * 14 13 12 34 34 H 1.08991 * 109.47216 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.46779 * 299.99990 * 17 15 14 36 36 H 1.09001 * 109.47259 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47613 * 299.99975 * 18 17 15 38 38 H 1.09004 * 109.47058 * 59.99651 * 19 18 17 39 39 H 1.08998 * 109.47864 * 180.02562 * 19 18 17 40 40 H 1.09005 * 109.46981 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47307 * 299.99601 * 20 19 18 42 42 H 0.96702 * 117.00256 * 179.97438 * 25 23 21 43 43 H 1.08005 * 119.87690 * 180.02562 * 26 12 11 44 44 H 1.08009 * 120.12700 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3772 2.1114 1.3940 5 1 1.5004 2.6176 -0.8095 6 1 3.5915 1.4103 -0.5846 7 6 2.0079 -1.2120 0.0005 8 1 1.5173 -2.1189 -0.3204 9 6 3.3573 -1.2490 0.4214 10 6 3.8498 -0.2749 1.3094 11 6 5.1634 -0.3242 1.7168 12 6 6.0035 -1.3215 1.2463 13 6 7.4418 -1.3608 1.6945 14 7 8.2646 -0.5698 0.7696 15 6 9.6761 -0.5849 1.1764 16 1 9.7406 -0.5976 2.2645 17 6 10.3567 -1.8329 0.6106 18 6 10.2662 -1.8150 -0.9166 19 6 10.9652 -0.5649 -1.4544 20 6 10.2847 0.6832 -0.8885 21 6 10.3752 0.6653 0.6386 22 1 11.4225 0.6542 0.9405 23 6 9.7055 1.8949 1.1960 24 8 8.7650 1.7830 1.9463 25 8 10.1536 3.1145 0.8589 26 6 5.5305 -2.2833 0.3671 27 6 4.2191 -2.2570 -0.0492 28 1 -0.4851 -0.8367 0.0748 29 1 3.1984 0.5060 1.6730 30 1 5.5425 0.4198 2.4018 31 1 7.5211 -0.9440 2.6985 32 1 7.7924 -2.3929 1.7007 33 1 8.1579 -0.8965 -0.1791 34 1 11.4038 -1.8443 0.9128 35 1 9.8587 -2.7236 0.9936 36 1 10.7507 -2.7044 -1.3197 37 1 9.2189 -1.8039 -1.2184 38 1 12.0126 -0.5761 -1.1525 39 1 10.9004 -0.5519 -2.5423 40 1 10.7824 1.5739 -1.2720 41 1 9.2374 0.6944 -1.1903 42 1 9.6917 3.8731 1.2412 43 1 6.1937 -3.0560 0.0072 44 1 3.8526 -3.0070 -0.7346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:53 Heat of formation + Delta-G solvation = -94.311303 kcal Electronic energy + Delta-G solvation = -25143.132329 eV Core-core repulsion = 21637.660583 eV Total energy + Delta-G solvation = -3505.471746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59812 -38.74775 -37.75302 -35.88595 -34.63537 -33.38292 -31.46782 -30.91467 -29.62427 -28.98381 -25.87146 -24.20020 -22.87790 -22.54753 -21.46758 -21.15805 -19.87817 -18.96300 -18.06950 -17.79541 -16.89363 -15.89789 -15.72954 -15.11080 -14.76021 -14.60717 -14.27527 -14.05302 -13.86469 -13.64328 -13.33941 -12.98104 -12.63389 -12.57420 -12.28213 -12.20254 -12.18662 -11.81973 -11.49707 -11.38343 -11.25029 -11.19182 -10.85818 -10.78672 -10.59721 -10.33406 -10.15992 -10.07185 -10.00591 -9.69556 -9.25468 -9.02681 -7.99730 -7.62296 -7.51936 -7.25249 -4.48360 2.45676 2.68376 2.78818 3.12753 3.28009 3.42181 3.63382 4.09440 4.30385 4.50256 4.56955 4.65036 4.80513 4.94305 4.99631 5.17048 5.25157 5.37740 5.44139 5.46127 5.51935 5.65356 5.73966 5.83859 5.87090 5.90461 5.95248 6.00475 6.10513 6.17877 6.21207 6.26597 6.36205 6.62414 6.66470 6.92932 7.10467 7.36946 7.41402 7.55359 7.66423 7.76456 7.85265 7.97353 8.06908 8.11435 8.46723 8.62820 8.82762 10.03790 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.004127 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.987453 B = 6783.252810 C = 7565.323739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.045 3.955 3 Si 1.073 2.927 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.249 4.249 11 C -0.045 4.045 12 C -0.217 4.217 13 C 0.131 3.869 14 N -0.668 5.668 15 C 0.099 3.901 16 H 0.082 0.918 17 C -0.148 4.148 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.062 4.062 22 H 0.100 0.900 23 C 0.477 3.523 24 O -0.479 6.479 25 O -0.529 6.529 26 C -0.073 4.073 27 C -0.221 4.221 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.017 0.983 33 H 0.338 0.662 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.405 0.595 43 H 0.086 0.914 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.317 1.179 -0.596 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.174 4.174 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.545 4.545 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.268 4.268 11 C -0.064 4.064 12 C -0.219 4.219 13 C 0.003 3.997 14 N -0.300 5.300 15 C -0.012 4.012 16 H 0.100 0.900 17 C -0.187 4.187 18 C -0.163 4.163 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.082 4.082 22 H 0.118 0.882 23 C 0.316 3.684 24 O -0.363 6.363 25 O -0.342 6.342 26 C -0.092 4.092 27 C -0.240 4.240 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.159 0.841 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.263 0.737 43 H 0.105 0.895 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 21.777 2.979 -0.317 21.982 hybrid contribution -0.089 -2.208 0.107 2.213 sum 21.688 0.771 -0.210 21.703 Atomic orbital electron populations 1.70546 1.08275 1.32662 1.32408 1.27273 0.95566 1.04558 0.90050 0.83577 0.75978 0.72943 0.77505 1.20608 1.22036 1.18477 1.20670 0.96199 0.97180 1.40480 0.90696 1.17739 0.92827 0.90766 0.89017 1.20998 0.96250 1.03944 1.05610 1.20447 0.93012 0.95653 0.97243 1.18907 0.94009 1.01099 1.07840 1.20504 0.90497 0.93202 0.95496 1.60688 1.04400 1.58748 1.06178 1.21361 0.89254 0.90989 0.99608 0.89988 1.22197 1.01366 0.98979 0.96206 1.21576 1.01370 0.97987 0.95361 1.21521 0.99368 0.94074 1.00340 1.21504 1.02788 0.98664 0.92034 1.21037 0.99759 0.89886 0.97544 0.88160 1.23271 0.82074 0.84123 0.78882 1.90773 1.25752 1.86667 1.33124 1.84511 1.61599 1.17174 1.70877 1.20458 0.95236 0.96809 0.96718 1.20909 0.93597 1.03465 1.06026 0.90322 0.88311 0.88649 0.91696 0.96454 0.84145 0.91529 0.91363 0.91741 0.91410 0.91888 0.91452 0.90918 0.90302 0.73699 0.89533 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.59 13.65 55.55 0.76 -21.83 16 2 C 0.05 1.23 5.40 -17.34 -0.09 1.13 16 3 Si 1.07 25.65 24.83 -169.99 -4.22 21.43 16 4 H -0.28 -6.42 6.64 56.52 0.38 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.28 6.83 56.52 0.39 -5.89 16 7 C -0.52 -14.39 9.44 -37.74 -0.36 -14.74 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.10 2.63 5.20 -106.83 -0.56 2.08 16 10 C -0.25 -6.31 7.21 -38.87 -0.28 -6.59 16 11 C -0.04 -1.03 9.67 -39.66 -0.38 -1.42 16 12 C -0.22 -4.53 5.41 -104.33 -0.56 -5.10 16 13 C 0.13 2.21 5.60 -4.97 -0.03 2.18 16 14 N -0.67 -9.99 4.55 -107.98 -0.49 -10.48 16 15 C 0.10 1.15 1.85 -67.71 -0.13 1.02 16 16 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 17 C -0.15 -1.38 5.52 -26.73 -0.15 -1.53 16 18 C -0.13 -1.11 5.67 -26.74 -0.15 -1.26 16 19 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 20 C -0.11 -1.08 4.90 -26.73 -0.13 -1.21 16 21 C -0.06 -0.65 2.45 -91.77 -0.23 -0.87 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 23 C 0.48 6.09 7.46 36.01 0.27 6.36 16 24 O -0.48 -8.04 15.96 -18.75 -0.30 -8.34 16 25 O -0.53 -5.40 13.33 -39.26 -0.52 -5.92 16 26 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 27 C -0.22 -5.31 9.80 -38.88 -0.38 -5.69 16 28 H 0.29 7.66 8.73 -40.82 -0.36 7.31 16 29 H 0.10 2.51 4.26 -52.49 -0.22 2.29 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.06 1.13 7.99 -51.93 -0.42 0.72 16 32 H 0.02 0.27 7.38 -51.93 -0.38 -0.11 16 33 H 0.34 5.00 5.56 -39.29 -0.22 4.78 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.70 6.26 -51.93 -0.32 0.38 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.08 0.93 7.21 -51.93 -0.37 0.55 16 42 H 0.40 2.75 9.10 45.56 0.41 3.17 16 43 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -30.72 346.82 -8.98 -39.70 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.73 Total: 8.88 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -3.70 Total: -28.67 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.27 Total: -32.31 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.82 Total: -14.26 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.22 Total: 21.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.72 -8.98 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.607 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds