Wall clock time and date at job start Tue Mar 31 2020 08:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99839 * 2 1 4 4 H 1.48494 * 109.47409 * 240.00085 * 3 2 1 5 5 H 1.48498 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 120.00174 * 3 2 1 7 7 C 1.37877 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47284 * 55.00642 * 11 10 9 13 13 N 1.46901 * 109.47187 * 295.00073 * 11 10 9 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 11 10 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 11 16 16 C 1.50698 * 115.55221 * 34.41421 * 15 14 13 17 17 O 1.20829 * 119.99823 * 145.58007 * 16 15 14 18 18 O 1.34227 * 120.00096 * 325.58896 * 16 15 14 19 19 C 1.53003 * 117.50089 * 248.74705 * 15 14 13 20 20 C 1.52999 * 117.50120 * 180.08894 * 15 14 13 21 21 C 1.50703 * 109.47106 * 175.00508 * 11 10 9 22 22 C 1.38228 * 120.00340 * 79.72833 * 21 11 10 23 23 C 1.38234 * 120.00076 * 179.81084 * 22 21 11 24 24 C 1.38238 * 119.99922 * 0.40009 * 23 22 21 25 25 C 1.38234 * 119.99847 * 359.85084 * 24 23 22 26 26 C 1.38226 * 120.00031 * 359.95933 * 25 24 23 27 27 H 0.96986 * 119.99916 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 60.00270 * 9 7 2 29 29 H 1.08999 * 109.46946 * 299.99891 * 9 7 2 30 30 H 1.09000 * 109.46809 * 60.00394 * 10 9 7 31 31 H 1.08999 * 109.47359 * 299.99878 * 10 9 7 32 32 H 1.00901 * 111.00067 * 278.95167 * 13 11 10 33 33 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 34 34 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 35 35 H 0.96699 * 117.00157 * 179.97438 * 18 16 15 36 36 H 1.09005 * 117.49773 * 359.97438 * 19 15 14 37 37 H 1.08993 * 117.50268 * 145.01747 * 19 15 14 38 38 H 1.08994 * 117.50245 * 214.97818 * 20 15 14 39 39 H 1.09007 * 117.49453 * 359.97292 * 20 15 14 40 40 H 1.08007 * 119.99903 * 359.97438 * 22 21 11 41 41 H 1.08000 * 120.00064 * 180.22150 * 23 22 21 42 42 H 1.07997 * 119.99595 * 179.83475 * 24 23 22 43 43 H 1.08001 * 119.99782 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00207 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 1 0.7874 -5.0070 -0.8423 13 7 0.7301 -5.1187 1.2549 14 6 -0.4287 -6.0056 1.0853 15 6 -1.1838 -6.1171 2.4113 16 6 -1.1952 -4.8716 3.2596 17 8 -2.1654 -4.6053 3.9288 18 8 -0.1277 -4.0580 3.2717 19 6 -1.1451 -7.4645 3.1352 20 6 -2.4300 -7.0043 2.4422 21 6 2.4550 -6.1298 -0.1262 22 6 3.1540 -6.5665 0.9835 23 6 4.0450 -7.6173 0.8696 24 6 4.2430 -8.2259 -0.3557 25 6 3.5477 -7.7857 -1.4664 26 6 2.6539 -6.7376 -1.3517 27 1 -0.4849 0.8399 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 2.8727 -3.6047 0.8877 31 1 2.8714 -3.6039 -0.8923 32 1 1.3274 -5.4428 2.0007 33 1 -1.0916 -5.5955 0.3234 34 1 -0.0878 -6.9938 0.7767 35 1 -0.1818 -3.2710 3.8309 36 1 -0.5819 -8.2716 2.6666 37 1 -1.1281 -7.4500 4.2249 38 1 -3.2579 -6.6873 3.0763 39 1 -2.7121 -7.5081 1.5177 40 1 3.0022 -6.0885 1.9400 41 1 4.5886 -7.9609 1.7373 42 1 4.9411 -9.0451 -0.4452 43 1 3.7027 -8.2610 -2.4238 44 1 2.1110 -6.3934 -2.2196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:23 Heat of formation + Delta-G solvation = -41.547088 kcal Electronic energy + Delta-G solvation = -25032.071589 eV Core-core repulsion = 21528.887871 eV Total energy + Delta-G solvation = -3503.183718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29688 -39.43632 -37.39328 -36.16110 -35.34156 -33.12060 -31.39247 -30.78465 -30.23226 -27.00483 -25.28329 -23.91569 -23.35770 -22.65501 -22.33849 -20.91154 -19.78373 -19.47019 -17.63498 -17.05462 -16.55762 -16.08709 -15.35419 -15.22527 -15.15647 -14.63030 -14.37487 -14.11576 -14.00193 -13.73693 -13.27665 -13.17880 -12.89722 -12.70112 -12.29067 -12.02526 -11.75707 -11.64977 -11.51929 -11.16811 -11.00809 -10.96979 -10.87700 -10.65682 -10.53084 -10.33079 -10.30376 -10.09686 -9.61707 -9.32762 -8.96236 -8.85697 -8.45650 -8.21816 -7.89996 -5.86911 -3.87795 1.44610 1.46594 2.39224 3.30433 3.39187 3.43825 3.46177 3.65149 3.86383 4.19824 4.55368 4.64238 4.78588 4.90667 4.93671 4.98101 5.05399 5.19910 5.25150 5.40512 5.48555 5.54494 5.60256 5.61738 5.68787 5.71309 5.87428 5.94370 6.01172 6.06465 6.10759 6.24621 6.52282 6.54921 6.62506 6.69741 6.90331 6.94447 7.07549 7.30618 7.47029 7.81879 7.86577 8.09798 8.27369 8.36617 8.59316 9.21155 9.74546 11.23868 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.005487 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.597881 B = 5101.605362 C = 7528.061171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.049 0.951 9 C 0.032 3.968 10 C -0.088 4.088 11 C 0.125 3.875 12 H 0.080 0.920 13 N -0.647 5.647 14 C 0.099 3.901 15 C -0.135 4.135 16 C 0.526 3.474 17 O -0.536 6.536 18 O -0.468 6.468 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.120 4.120 26 C -0.116 4.116 27 H 0.258 0.742 28 H 0.005 0.995 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.341 0.659 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.405 0.595 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -19.364 2.967 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.068 0.932 9 C -0.005 4.005 10 C -0.126 4.126 11 C 0.015 3.985 12 H 0.098 0.902 13 N -0.278 5.278 14 C -0.031 4.031 15 C -0.137 4.137 16 C 0.369 3.631 17 O -0.427 6.427 18 O -0.276 6.276 19 C -0.189 4.189 20 C -0.177 4.177 21 C -0.099 4.099 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.151 4.151 25 C -0.138 4.138 26 C -0.134 4.134 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.262 0.738 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.287 -18.915 2.809 19.165 hybrid contribution 0.966 0.660 0.213 1.189 sum 2.252 -18.255 3.022 18.640 Atomic orbital electron populations 1.69966 1.05884 1.26274 1.51320 1.24968 0.94739 0.98833 0.95745 0.86775 0.79636 0.83757 0.78462 1.20474 1.21459 1.20411 1.21293 0.92795 0.91527 1.49915 0.93247 1.18998 0.93741 0.89967 0.97838 1.21599 0.98499 0.92615 0.99903 1.20884 0.92441 0.92815 0.92342 0.90180 1.60582 1.10021 1.51134 1.06089 1.21472 0.93277 0.95419 0.92922 1.21093 1.05322 0.89031 0.98216 1.21784 0.79953 0.83267 0.78141 1.90674 1.35445 1.73953 1.42665 1.84749 1.41022 1.36418 1.65390 1.23187 1.01200 0.94392 1.00100 1.23106 0.91527 0.99847 1.03261 1.21068 0.98317 0.97110 0.93435 1.20977 0.96866 0.97079 0.98730 1.21083 0.98521 0.96586 0.97476 1.21064 1.00352 1.00531 0.93173 1.21113 0.96958 0.97375 0.98380 1.21107 0.98841 0.96174 0.97310 0.93238 0.97679 0.94309 0.93216 0.93591 0.83778 0.90105 0.94608 0.73761 0.87534 0.88213 0.87180 0.87428 0.86027 0.86467 0.86643 0.86496 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 10 C -0.09 -1.78 4.81 -26.73 -0.13 -1.91 16 11 C 0.12 2.01 2.22 -68.86 -0.15 1.86 16 12 H 0.08 1.33 7.66 -51.93 -0.40 0.93 16 13 N -0.65 -9.75 3.49 -107.95 -0.38 -10.12 16 14 C 0.10 1.30 5.61 -3.82 -0.02 1.27 16 15 C -0.14 -1.70 2.46 -155.66 -0.38 -2.09 16 16 C 0.53 8.20 7.85 36.00 0.28 8.48 16 17 O -0.54 -9.73 17.02 -18.75 -0.32 -10.05 16 18 O -0.47 -7.15 10.69 -39.25 -0.42 -7.57 16 19 C -0.15 -1.47 9.88 -26.69 -0.26 -1.73 16 20 C -0.14 -1.46 9.77 -26.70 -0.26 -1.73 16 21 C -0.10 -1.36 4.71 -104.62 -0.49 -1.85 16 22 C -0.12 -1.51 9.11 -39.59 -0.36 -1.88 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 24 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 25 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 26 C -0.12 -1.50 9.67 -39.58 -0.38 -1.88 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.04 1.05 7.75 -51.93 -0.40 0.65 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.34 4.82 5.83 -39.29 -0.23 4.59 16 33 H 0.08 1.14 8.06 -51.93 -0.42 0.73 16 34 H 0.04 0.42 7.76 -51.93 -0.40 0.02 16 35 H 0.40 5.17 9.10 45.56 0.41 5.58 16 36 H 0.11 0.86 8.05 -51.93 -0.42 0.45 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.11 1.25 7.67 -51.93 -0.40 0.85 16 39 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.12 1.49 6.53 -52.48 -0.34 1.15 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.46 8.04 -52.48 -0.42 1.04 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -33.23 368.37 -9.69 -42.92 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.94 Total: 8.30 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.90 Total: -19.55 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.36 Total: -36.52 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.74 Total: -17.62 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.23 -9.69 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.373 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds