Wall clock time and date at job start Tue Mar 31 2020 08:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00289 * 2 1 4 4 H 1.48495 * 109.47452 * 240.00444 * 3 2 1 5 5 H 1.48507 * 109.46899 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47282 * 120.00333 * 3 2 1 7 7 C 1.38815 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00647 * 204.60877 * 7 2 1 9 9 N 1.36939 * 119.99929 * 24.60612 * 7 2 1 10 10 C 1.46506 * 119.99907 * 8.37003 * 9 7 2 11 11 C 1.50693 * 109.47393 * 270.41099 * 10 9 7 12 12 O 1.20826 * 120.00269 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00140 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00248 * 188.37666 * 9 7 2 15 15 C 1.52997 * 109.47086 * 89.99411 * 14 9 7 16 16 H 1.09002 * 110.43486 * 52.46870 * 15 14 9 17 17 C 1.54884 * 110.49011 * 289.77876 * 15 14 9 18 18 C 1.54898 * 102.75013 * 203.38150 * 17 15 14 19 19 C 1.54269 * 104.19340 * 37.93950 * 18 17 15 20 20 H 1.08994 * 110.07437 * 95.70085 * 19 18 17 21 21 C 1.50701 * 110.03210 * 217.10749 * 19 18 17 22 22 C 1.38233 * 119.99892 * 237.17237 * 21 19 18 23 23 C 1.38239 * 120.00053 * 179.97438 * 22 21 19 24 24 C 1.38235 * 119.99640 * 0.02562 * 23 22 21 25 25 C 1.38235 * 120.00245 * 359.97438 * 24 23 22 26 26 C 1.38237 * 119.99757 * 57.18700 * 21 19 18 27 27 C 1.53872 * 106.60014 * 336.39204 * 19 18 17 28 28 H 0.97000 * 120.00021 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46716 * 30.41533 * 10 9 7 30 30 H 1.08997 * 109.46749 * 150.41168 * 10 9 7 31 31 H 0.96699 * 116.99942 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.46717 * 329.99783 * 14 9 7 33 33 H 1.09001 * 109.47004 * 210.00196 * 14 9 7 34 34 H 1.09003 * 110.75361 * 321.69163 * 17 15 14 35 35 H 1.08998 * 110.75687 * 85.06814 * 17 15 14 36 36 H 1.09005 * 110.48259 * 279.26514 * 18 17 15 37 37 H 1.08996 * 110.48642 * 156.61912 * 18 17 15 38 38 H 1.08001 * 120.00129 * 359.97438 * 22 21 19 39 39 H 1.07998 * 120.00333 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99793 * 179.69881 * 24 23 22 41 41 H 1.08002 * 120.00239 * 179.97438 * 25 24 23 42 42 H 1.07992 * 120.00388 * 0.02562 * 26 21 19 43 43 H 1.08999 * 110.03466 * 119.28310 * 27 19 18 44 44 H 1.09002 * 110.03585 * 240.71734 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0167 -1.2449 0.3889 9 7 1.4189 -2.3340 -0.4948 10 6 0.1313 -2.2447 -1.1882 11 6 -0.9880 -2.3891 -0.1897 12 8 -0.7363 -2.5496 0.9811 13 8 -2.2648 -2.3394 -0.6009 14 6 2.0735 -3.6343 -0.3302 15 6 1.6132 -4.2747 0.9808 16 1 0.5246 -4.2983 1.0312 17 6 2.1983 -3.5086 2.1931 18 6 2.1673 -4.5734 3.3177 19 6 2.5432 -5.8884 2.6040 20 1 3.6104 -6.0813 2.7129 21 6 1.7507 -7.0334 3.1801 22 6 2.4053 -8.1283 3.7126 23 6 1.6782 -9.1783 4.2416 24 6 0.2966 -9.1336 4.2376 25 6 -0.3580 -8.0386 3.7052 26 6 0.3690 -6.9887 3.1759 27 6 2.1909 -5.6985 1.1182 28 1 -0.4850 0.8400 0.0004 29 1 0.0526 -1.2777 -1.6851 30 1 0.0619 -3.0408 -1.9294 31 1 -2.9482 -2.4365 0.0763 32 1 3.1545 -3.4964 -0.3073 33 1 1.8076 -4.2831 -1.1647 34 1 3.2209 -3.1896 1.9914 35 1 1.5702 -2.6560 2.4511 36 1 1.1682 -4.6450 3.7478 37 1 2.8996 -4.3351 4.0890 38 1 3.4847 -8.1634 3.7153 39 1 2.1896 -10.0339 4.6573 40 1 -0.2715 -9.9561 4.6465 41 1 -1.4374 -8.0039 3.7017 42 1 -0.1424 -6.1337 2.7593 43 1 3.0873 -5.7983 0.5062 44 1 1.4467 -6.4344 0.8139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:54 Heat of formation + Delta-G solvation = -55.264505 kcal Electronic energy + Delta-G solvation = -25549.191088 eV Core-core repulsion = 22045.412538 eV Total energy + Delta-G solvation = -3503.778550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.67223 -38.65687 -37.42881 -35.44389 -34.24702 -32.12606 -30.94005 -30.73858 -28.85991 -27.72013 -26.77146 -24.70601 -22.64609 -22.13158 -21.66415 -20.21123 -19.34530 -18.95512 -16.88433 -16.77902 -16.56724 -15.53555 -15.22801 -15.09697 -14.87826 -14.26538 -14.03336 -13.89043 -13.46729 -13.28037 -13.21069 -12.97284 -12.75865 -12.53810 -11.83994 -11.61287 -11.41390 -11.18122 -11.05987 -10.94037 -10.86688 -10.65517 -10.47639 -10.33356 -10.22210 -10.19199 -10.05772 -9.87755 -9.67980 -9.46766 -8.97074 -8.84742 -8.52640 -8.46055 -7.06755 -5.90357 -3.15017 1.44433 1.46788 3.38116 3.44910 3.45744 3.85760 4.00307 4.39182 4.63700 4.81165 4.89959 5.03762 5.14829 5.20461 5.23990 5.32367 5.49321 5.53843 5.60255 5.65926 5.92738 5.96677 6.06998 6.11326 6.17024 6.24419 6.27621 6.33453 6.37522 6.39462 6.52086 6.55144 6.58752 6.69052 6.80219 6.83450 6.93118 7.04171 7.10077 7.12206 7.25038 7.41001 7.72619 7.96951 8.20026 9.06461 9.53508 9.77355 10.17646 11.21513 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.004109 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.710396 B = 6812.532234 C = 7519.376006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.568 5.568 10 C 0.189 3.811 11 C 0.478 3.522 12 O -0.511 6.511 13 O -0.547 6.547 14 C 0.152 3.848 15 C -0.109 4.109 16 H 0.080 0.920 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.055 4.055 20 H 0.072 0.928 21 C -0.061 4.061 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.111 4.111 27 C -0.113 4.113 28 H 0.256 0.744 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.377 0.623 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.060 0.940 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -14.305 3.276 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.288 5.288 10 C 0.059 3.941 11 C 0.318 3.682 12 O -0.397 6.397 13 O -0.357 6.357 14 C 0.026 3.974 15 C -0.129 4.129 16 H 0.098 0.902 17 C -0.132 4.132 18 C -0.155 4.155 19 C -0.073 4.073 20 H 0.090 0.910 21 C -0.061 4.061 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.129 4.129 27 C -0.151 4.151 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.232 0.768 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.615 -14.147 3.291 14.614 hybrid contribution -0.253 0.868 0.893 1.271 sum 1.362 -13.279 4.185 13.989 Atomic orbital electron populations 1.69788 1.05182 1.25743 1.54534 1.24691 0.95158 0.98247 1.01817 0.86303 0.78918 0.83292 0.78006 1.21138 1.21838 1.21141 1.19220 0.96670 0.85031 1.36026 0.90178 1.44212 1.17691 1.02882 1.63974 1.20406 0.81277 1.02035 0.90337 1.25315 0.81680 0.69765 0.91440 1.90467 1.83609 1.45817 1.19838 1.84651 1.18689 1.86764 1.45598 1.21040 0.96384 0.86217 0.93771 1.22724 1.01120 0.91627 0.97461 0.90195 1.22274 1.00332 0.97376 0.93176 1.22540 1.00764 0.94003 0.98160 1.20854 0.98028 0.92727 0.95739 0.90989 1.20060 0.93924 0.95269 0.96877 1.21080 0.99631 0.93938 0.99597 1.21074 0.94234 0.98531 1.00276 1.21070 0.94599 0.98434 1.01074 1.21155 0.99774 0.94113 0.98758 1.21139 0.93804 0.98699 0.99240 1.22348 1.00348 0.98533 0.93900 0.93311 0.87038 0.93369 0.76766 0.92992 0.94345 0.92794 0.90113 0.91897 0.92671 0.86417 0.86541 0.86598 0.86361 0.85681 0.92172 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.96 8.91 55.49 0.49 -24.46 16 2 C 0.00 -0.06 4.91 -17.43 -0.09 -0.14 16 3 Si 0.90 21.24 29.62 -169.99 -5.03 16.21 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.15 8.84 -15.06 -0.13 -6.28 16 8 H 0.08 2.02 7.93 -52.49 -0.42 1.61 16 9 N -0.57 -13.15 2.05 -174.61 -0.36 -13.50 16 10 C 0.19 4.29 5.59 -5.19 -0.03 4.26 16 11 C 0.48 11.16 6.26 36.00 0.23 11.38 16 12 O -0.51 -13.15 14.37 -18.75 -0.27 -13.42 16 13 O -0.55 -11.10 13.42 -39.26 -0.53 -11.63 16 14 C 0.15 2.95 5.08 -4.04 -0.02 2.93 16 15 C -0.11 -2.00 2.61 -88.96 -0.23 -2.23 16 16 H 0.08 1.69 5.92 -51.93 -0.31 1.39 16 17 C -0.09 -1.80 5.46 -24.74 -0.14 -1.94 16 18 C -0.12 -1.89 6.26 -25.07 -0.16 -2.05 16 19 C -0.05 -0.79 3.13 -90.65 -0.28 -1.07 16 20 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 21 C -0.06 -0.85 4.69 -104.62 -0.49 -1.34 16 22 C -0.12 -1.53 9.68 -39.58 -0.38 -1.91 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 25 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.11 -1.57 8.13 -39.58 -0.32 -1.89 16 27 C -0.11 -1.71 5.82 -25.61 -0.15 -1.86 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.11 2.76 6.31 -51.93 -0.33 2.43 16 30 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 31 H 0.38 6.19 9.10 45.56 0.41 6.60 16 32 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 34 H 0.05 1.02 7.97 -51.93 -0.41 0.61 16 35 H 0.08 1.90 8.10 -51.93 -0.42 1.48 16 36 H 0.06 1.07 6.86 -51.93 -0.36 0.71 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.12 1.24 7.96 -52.49 -0.42 0.82 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.13 1.91 7.73 -52.49 -0.41 1.50 16 43 H 0.06 0.84 7.84 -51.93 -0.41 0.44 16 44 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -29.55 351.54 -9.69 -39.24 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.90 Total: 9.97 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.39 Total: -7.70 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.14 Total: -37.96 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.80 Total: -25.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.55 -9.69 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.022 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds