Wall clock time and date at job start Tue Mar 31 2020 08:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35040 * 120.00094 * 2 1 4 4 C 1.41267 * 119.99813 * 184.71170 * 3 2 1 5 5 O 1.21696 * 120.00411 * 5.51883 * 4 3 2 6 6 O 1.34977 * 119.99699 * 185.51958 * 4 3 2 7 7 C 1.42900 * 116.99961 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46944 * 89.99629 * 7 6 4 9 9 C 1.52994 * 109.47211 * 209.99888 * 7 6 4 10 10 N 1.36707 * 119.99926 * 179.97438 * 2 1 3 11 11 C 1.38971 * 119.99592 * 58.85718 * 10 2 1 12 12 C 1.39575 * 119.84029 * 9.77697 * 11 10 2 13 13 C 1.36318 * 120.16308 * 180.02562 * 12 11 10 14 14 C 1.40917 * 119.82995 * 0.02562 * 13 12 11 15 15 C 1.41111 * 120.15031 * 179.72420 * 14 13 12 16 16 H 1.07997 * 119.99867 * 147.82967 * 15 14 13 17 17 C 1.39893 * 120.00249 * 327.82083 * 15 14 13 18 18 N 1.30880 * 119.99493 * 168.14933 * 17 15 14 19 19 Si 1.86796 * 120.00115 * 348.15338 * 17 15 14 20 20 H 1.48502 * 109.47271 * 88.26502 * 19 17 15 21 21 H 1.48500 * 109.46934 * 208.26199 * 19 17 15 22 22 H 1.48500 * 109.47218 * 328.26119 * 19 17 15 23 23 C 1.40873 * 119.68722 * 0.02562 * 14 13 12 24 24 C 1.50705 * 120.08219 * 179.97438 * 23 14 13 25 25 C 1.36348 * 119.83678 * 359.97438 * 23 14 13 26 26 H 1.08996 * 109.47293 * 266.80963 * 1 2 3 27 27 H 1.09005 * 109.46874 * 26.80426 * 1 2 3 28 28 H 1.08998 * 109.47155 * 146.80890 * 1 2 3 29 29 H 1.08003 * 120.00140 * 4.70719 * 3 2 1 30 30 H 1.09004 * 109.47304 * 330.00544 * 7 6 4 31 31 H 1.08997 * 109.47010 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47436 * 300.00587 * 8 7 6 33 33 H 1.09001 * 109.47080 * 60.00180 * 8 7 6 34 34 H 1.09002 * 109.47246 * 60.00640 * 9 7 6 35 35 H 1.09003 * 109.46737 * 179.97438 * 9 7 6 36 36 H 1.08996 * 109.47398 * 300.00240 * 9 7 6 37 37 H 0.96999 * 120.00210 * 238.85770 * 10 2 1 38 38 H 1.08002 * 119.91892 * 0.02562 * 12 11 10 39 39 H 1.07995 * 120.08243 * 179.97438 * 13 12 11 40 40 H 0.97008 * 119.99734 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.46394 * 90.00231 * 24 23 14 42 42 H 1.08990 * 109.47172 * 209.99829 * 24 23 14 43 43 H 1.08997 * 109.47010 * 330.00294 * 24 23 14 44 44 H 1.07996 * 119.92032 * 179.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1823 1.1695 0.0000 4 6 3.5914 1.1715 -0.1005 5 8 4.1896 0.1284 -0.2879 6 8 4.2742 2.3304 0.0113 7 6 5.6971 2.2583 -0.0998 8 6 6.1035 2.4298 -1.5649 9 6 6.3311 3.3698 0.7388 10 7 2.1906 -1.1839 0.0005 11 6 1.9989 -2.0973 -1.0292 12 6 1.2717 -1.7254 -2.1610 13 6 1.0792 -2.6162 -3.1747 14 6 1.6161 -3.9155 -3.0775 15 6 1.4160 -4.8449 -4.1203 16 1 2.1721 -5.5853 -4.3361 17 6 0.2383 -4.8074 -4.8743 18 7 0.1459 -5.5041 -5.9784 19 14 -1.2021 -3.7630 -4.3055 20 1 -1.0613 -2.3879 -4.8481 21 1 -2.4705 -4.3607 -4.7946 22 1 -1.2197 -3.7102 -2.8215 23 6 2.3481 -4.2840 -1.9317 24 6 2.9257 -5.6713 -1.8181 25 6 2.5326 -3.3824 -0.9256 26 1 -0.3634 -0.0572 1.0260 27 1 -0.3633 0.9173 -0.4634 28 1 -0.3633 -0.8600 -0.5626 29 1 1.6450 2.1033 0.0768 30 1 6.0412 1.2892 0.2615 31 1 7.1887 2.3743 -1.6497 32 1 5.6517 1.6379 -2.1624 33 1 5.7594 3.3988 -1.9263 34 1 6.0417 3.2475 1.7825 35 1 7.4165 3.3145 0.6543 36 1 5.9871 4.3388 0.3774 37 1 2.8093 -1.3864 0.7196 38 1 0.8604 -0.7294 -2.2338 39 1 0.5160 -2.3272 -4.0497 40 1 -0.6707 -5.4778 -6.5016 41 1 3.9309 -5.6818 -2.2397 42 1 2.9689 -5.9621 -0.7686 43 1 2.2953 -6.3731 -2.3641 44 1 3.0931 -3.6637 -0.0463 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166763521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:33 Heat of formation + Delta-G solvation = -51.374879 kcal Electronic energy + Delta-G solvation = -24715.150010 eV Core-core repulsion = 21211.540127 eV Total energy + Delta-G solvation = -3503.609883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.49351 -39.00456 -37.32399 -35.92168 -33.53331 -33.08071 -32.00669 -31.35848 -29.10815 -28.45056 -27.39721 -26.30535 -24.35855 -22.95828 -21.58284 -20.90004 -20.27601 -18.65294 -17.67267 -17.48288 -16.72498 -16.32456 -15.73136 -15.08475 -14.67344 -14.46852 -14.13027 -13.89878 -13.59049 -13.24369 -12.99455 -12.92342 -12.82372 -12.64990 -12.53463 -12.42705 -12.20927 -12.02172 -11.87885 -11.77563 -11.58864 -11.26295 -11.00244 -10.92011 -10.76504 -10.43805 -10.35328 -10.06453 -9.89395 -9.65674 -9.43663 -9.06505 -8.53436 -7.69091 -6.86449 -6.75568 -4.30964 1.21556 2.57729 2.68854 3.10514 3.12038 3.22155 3.30793 3.36566 3.95381 4.00738 4.52413 4.72975 4.86440 4.93742 5.09135 5.35136 5.39177 5.41951 5.44361 5.55944 5.58729 5.68047 5.75464 5.84901 5.90845 5.91339 5.98541 6.04441 6.11041 6.24717 6.39656 6.44460 6.58533 6.61433 6.78899 6.82882 6.86557 7.09680 7.18538 7.33560 7.53796 7.80120 7.97427 8.18497 8.23817 8.27227 8.40134 8.70292 8.86240 10.17936 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.003720 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.695762 B = 7525.163153 C = 7857.784798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 C -0.310 4.310 4 C 0.500 3.500 5 O -0.513 6.513 6 O -0.358 6.358 7 C 0.080 3.920 8 C -0.170 4.170 9 C -0.147 4.147 10 N -0.664 5.664 11 C 0.066 3.934 12 C -0.125 4.125 13 C -0.208 4.208 14 C 0.073 3.927 15 C -0.443 4.443 16 H 0.092 0.908 17 C 0.080 3.920 18 N -0.820 5.820 19 Si 0.914 3.086 20 H -0.271 1.271 21 H -0.295 1.295 22 H -0.247 1.247 23 C -0.146 4.146 24 C -0.090 4.090 25 C -0.117 4.117 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.404 0.596 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.283 0.717 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 13.222 11.760 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 C -0.335 4.335 4 C 0.350 3.650 5 O -0.404 6.404 6 O -0.276 6.276 7 C 0.025 3.975 8 C -0.228 4.228 9 C -0.204 4.204 10 N -0.288 5.288 11 C -0.028 4.028 12 C -0.146 4.146 13 C -0.228 4.228 14 C 0.070 3.930 15 C -0.472 4.472 16 H 0.109 0.891 17 C -0.137 4.137 18 N -0.446 5.446 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.171 1.171 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.138 4.138 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.154 0.846 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.242 0.758 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.600 12.763 11.358 17.461 hybrid contribution -0.268 0.520 0.285 0.651 sum 3.332 13.283 11.643 17.975 Atomic orbital electron populations 1.21438 0.90982 1.04600 1.03480 1.20057 0.93117 0.85584 0.85148 1.20808 0.91285 0.98604 1.22840 1.19766 0.89431 0.81403 0.74444 1.90903 1.70916 1.32327 1.46275 1.86265 1.21119 1.36252 1.83946 1.22161 0.78416 1.00524 0.96430 1.22229 1.01848 1.02855 0.95842 1.21873 1.00276 0.98378 0.99888 1.41195 1.45937 1.15824 1.25865 1.17139 1.06404 0.89886 0.89371 1.20069 1.02293 0.98538 0.93707 1.20726 1.08455 0.94385 0.99244 1.17589 0.91856 0.91751 0.91829 1.19353 1.03443 1.14046 1.10359 0.89050 1.26117 1.00400 0.94277 0.92886 1.69680 1.28444 1.35342 1.11144 0.86335 0.78754 0.79126 0.81607 1.19757 1.22276 1.17068 1.19377 1.05754 0.95319 0.94293 1.20470 0.99738 0.94786 0.99651 1.19857 1.02911 0.91822 0.99197 0.89781 0.90169 0.89474 0.84631 0.90250 0.91247 0.91786 0.91897 0.91991 0.90812 0.91651 0.75784 0.88547 0.87631 0.90675 0.93401 0.94048 0.91275 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.35 36.01 0.34 -1.43 16 2 C 0.27 3.94 5.15 -81.55 -0.42 3.52 16 3 C -0.31 -4.43 9.58 -39.57 -0.38 -4.81 16 4 C 0.50 8.12 7.62 31.88 0.24 8.36 16 5 O -0.51 -9.73 13.55 -19.42 -0.26 -9.99 16 6 O -0.36 -5.19 9.75 -41.25 -0.40 -5.59 16 7 C 0.08 0.99 3.14 -26.73 -0.08 0.91 16 8 C -0.17 -1.99 9.53 37.16 0.35 -1.64 16 9 C -0.15 -1.32 9.56 37.15 0.36 -0.96 16 10 N -0.66 -11.34 3.45 -6.67 -0.02 -11.36 16 11 C 0.07 1.35 6.40 -83.64 -0.54 0.82 16 12 C -0.13 -2.70 8.03 -39.77 -0.32 -3.02 16 13 C -0.21 -4.99 7.05 -39.26 -0.28 -5.27 16 14 C 0.07 1.83 5.11 -106.80 -0.55 1.28 16 15 C -0.44 -11.82 8.49 -37.87 -0.32 -12.14 16 16 H 0.09 2.55 7.31 -52.49 -0.38 2.17 16 17 C 0.08 2.09 5.47 -17.34 -0.09 2.00 16 18 N -0.82 -22.02 13.93 55.54 0.77 -21.25 16 19 Si 0.91 20.80 24.44 -169.99 -4.15 16.64 16 20 H -0.27 -6.00 6.46 56.52 0.37 -5.63 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.25 -5.68 6.90 56.52 0.39 -5.29 16 23 C -0.15 -3.32 5.90 -104.30 -0.62 -3.93 16 24 C -0.09 -1.80 9.42 36.01 0.34 -1.46 16 25 C -0.12 -2.45 9.47 -39.78 -0.38 -2.83 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.09 1.24 6.36 -51.93 -0.33 0.91 16 29 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.08 1.08 7.11 -51.93 -0.37 0.71 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 6.59 8.05 -40.82 -0.33 6.26 16 38 H 0.10 1.88 6.19 -52.49 -0.33 1.56 16 39 H 0.11 2.54 4.39 -52.49 -0.23 2.31 16 40 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.71 8.08 -51.93 -0.42 0.30 16 43 H 0.07 1.44 6.88 -51.93 -0.36 1.09 16 44 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -29.18 356.83 -7.60 -36.78 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.57 Total: 9.99 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.34 Total: -20.60 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.75 Total: -32.61 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.67 Total: -15.58 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.15 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.18 -7.60 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166763521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.595 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds