Wall clock time and date at job start Tue Mar 31 2020 10:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 C 1.52999 * 109.46962 * 59.99953 * 3 2 1 5 5 C 1.53004 * 109.47059 * 300.00267 * 3 2 1 6 6 N 1.46500 * 109.47274 * 180.02562 * 3 2 1 7 7 C 1.34776 * 119.99786 * 180.02562 * 6 3 2 8 8 O 1.21722 * 120.00523 * 359.97438 * 7 6 3 9 9 C 1.46261 * 119.99810 * 180.27920 * 7 6 3 10 10 C 1.35019 * 120.00169 * 179.72391 * 9 7 6 11 11 C 1.46959 * 120.00209 * 179.97438 * 10 9 7 12 12 C 1.40017 * 120.10027 * 359.71653 * 11 10 9 13 13 C 1.37600 * 119.89871 * 179.76963 * 12 11 10 14 14 C 1.39173 * 120.09945 * 0.50997 * 13 12 11 15 15 O 1.35570 * 119.89967 * 179.76472 * 14 13 12 16 16 C 1.34788 * 117.00091 * 174.42353 * 15 14 13 17 17 H 1.07991 * 119.99907 * 5.05912 * 16 15 14 18 18 C 1.38714 * 119.99689 * 185.05654 * 16 15 14 19 19 N 1.31507 * 120.00463 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47342 * 59.99861 * 20 18 16 22 22 H 1.48499 * 109.47262 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46907 * 299.99985 * 20 18 16 24 24 C 1.39180 * 120.20294 * 359.74773 * 14 13 12 25 25 C 1.37600 * 120.10236 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47139 * 300.00004 * 1 2 3 28 28 H 1.08995 * 109.47040 * 59.99831 * 1 2 3 29 29 H 1.09007 * 109.46980 * 240.00270 * 2 1 3 30 30 H 1.09001 * 109.47683 * 120.00358 * 2 1 3 31 31 H 1.08994 * 109.47179 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47523 * 300.00510 * 4 3 2 33 33 H 1.09009 * 109.46895 * 60.00538 * 4 3 2 34 34 H 1.08999 * 109.46924 * 299.99713 * 5 3 2 35 35 H 1.08994 * 109.46793 * 59.99878 * 5 3 2 36 36 H 1.09008 * 109.46843 * 179.97438 * 5 3 2 37 37 H 0.96999 * 120.00112 * 359.97438 * 6 3 2 38 38 H 1.08000 * 119.99984 * 359.71397 * 9 7 6 39 39 H 1.08000 * 119.99847 * 359.97438 * 10 9 7 40 40 H 1.08005 * 120.04922 * 0.02969 * 12 11 10 41 41 H 1.08005 * 119.95289 * 180.23375 * 13 12 11 42 42 H 0.96998 * 120.00154 * 179.97438 * 19 18 16 43 43 H 1.08007 * 119.94868 * 179.97438 * 24 14 13 44 44 H 1.07997 * 120.05056 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1638 -1.2492 6 7 3.5050 1.4425 -0.0006 7 6 4.1789 2.6097 -0.0002 8 8 3.5703 3.6639 0.0002 9 6 5.6415 2.6097 -0.0070 10 6 6.3166 3.7790 -0.0122 11 6 7.7861 3.7790 -0.0185 12 6 8.4884 2.5677 -0.0130 13 6 9.8644 2.5725 -0.0237 14 6 10.5581 3.7790 -0.0292 15 8 11.9137 3.7790 -0.0349 16 6 12.5252 4.9740 -0.1567 17 1 11.9402 5.8818 -0.1619 18 6 13.9058 5.0378 -0.2753 19 7 14.6182 3.9324 -0.2683 20 14 14.7532 6.6941 -0.4434 21 1 14.4569 7.5252 0.7510 22 1 16.2200 6.4906 -0.5540 23 1 14.2563 7.3830 -1.6615 24 6 9.8643 4.9855 -0.0292 25 6 8.4883 4.9904 -0.0243 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8937 3.1912 1.2495 32 1 0.4401 2.1637 1.2493 33 1 1.8935 1.6498 2.1393 34 1 1.8933 1.6499 -2.1392 35 1 0.4400 2.1638 -1.2491 36 1 1.8930 3.1916 -1.2490 37 1 3.9900 0.6024 -0.0006 38 1 6.1815 1.6744 -0.0077 39 1 5.7766 4.7143 -0.0118 40 1 7.9509 1.6309 -0.0047 41 1 10.4069 1.6386 -0.0233 42 1 15.5835 3.9771 -0.3516 43 1 10.4068 5.9195 -0.0330 44 1 7.9508 5.9272 -0.0247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036718949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:40 Heat of formation + Delta-G solvation = -54.943567 kcal Electronic energy + Delta-G solvation = -23304.191055 eV Core-core repulsion = 19800.426422 eV Total energy + Delta-G solvation = -3503.764633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15044 -40.78297 -38.63205 -37.90678 -34.72394 -34.07949 -33.63032 -31.96637 -30.65576 -29.43461 -28.22775 -27.50944 -25.77711 -24.33574 -23.66142 -22.08931 -20.59793 -20.28363 -19.68178 -18.82012 -18.23395 -17.10521 -16.46138 -16.41010 -15.95209 -15.85767 -15.62208 -15.54061 -15.50240 -14.90706 -14.70159 -14.56470 -14.10331 -14.03361 -13.60106 -13.31860 -13.28450 -13.16910 -12.97727 -12.75338 -12.70715 -12.61943 -12.53256 -12.21380 -12.19409 -12.13673 -11.60708 -11.57786 -11.21626 -11.08815 -10.56870 -10.55313 -9.99504 -9.89312 -8.67143 -8.51972 -6.18278 -0.22065 0.58327 1.16288 1.35593 1.47431 1.51368 2.15465 2.32164 2.42893 2.86911 3.18084 3.42622 3.72211 3.88634 3.95363 3.98790 4.08666 4.14523 4.31544 4.36487 4.47056 4.47848 4.53780 4.65786 4.71394 4.82387 4.83700 4.94876 4.99633 5.03368 5.04042 5.14696 5.15246 5.19673 5.23386 5.31946 5.34981 5.48624 5.53345 5.59548 5.63825 5.72269 5.82763 5.97272 6.10741 6.72964 6.92181 7.39556 7.69300 8.69821 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.047049 B = 0.002078 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.978504 B =13471.385965 C =13861.850953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.168 3.832 4 C -0.162 4.162 5 C -0.162 4.162 6 N -0.713 5.713 7 C 0.550 3.450 8 O -0.582 6.582 9 C -0.245 4.245 10 C 0.012 3.988 11 C -0.169 4.169 12 C -0.038 4.038 13 C -0.207 4.207 14 C 0.129 3.871 15 O -0.220 6.220 16 C -0.418 4.418 17 H 0.105 0.895 18 C -0.019 4.019 19 N -0.914 5.914 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.249 4.249 25 C -0.042 4.042 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.413 0.587 38 H 0.149 0.851 39 H 0.124 0.876 40 H 0.160 0.840 41 H 0.123 0.877 42 H 0.275 0.725 43 H 0.125 0.875 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.943 -6.920 0.283 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.083 3.917 4 C -0.220 4.220 5 C -0.220 4.220 6 N -0.364 5.364 7 C 0.341 3.659 8 O -0.465 6.465 9 C -0.266 4.266 10 C -0.008 4.008 11 C -0.170 4.170 12 C -0.056 4.056 13 C -0.226 4.226 14 C 0.077 3.923 15 O -0.125 6.125 16 C -0.493 4.493 17 H 0.122 0.878 18 C -0.217 4.217 19 N -0.550 5.550 20 Si 0.837 3.163 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.182 1.182 24 C -0.268 4.268 25 C -0.060 4.060 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.249 0.751 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.177 0.823 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.998 -6.473 0.289 25.825 hybrid contribution 1.204 0.398 -0.047 1.269 sum -23.794 -6.076 0.243 24.559 Atomic orbital electron populations 1.21863 0.93967 1.02683 1.02517 1.21735 0.97564 0.93006 1.03370 1.20443 0.78851 0.96990 0.95426 1.22225 1.01963 1.00939 0.96824 1.22227 1.01961 1.00933 0.96834 1.45979 1.07124 1.08430 1.74853 1.18457 0.88365 0.83728 0.75322 1.90724 1.70907 1.32735 1.52129 1.22843 0.92412 0.99959 1.11390 1.22145 0.91069 0.98752 0.88821 1.18796 0.92678 0.93253 1.12299 1.21279 0.91686 0.98476 0.94168 1.20425 0.94778 0.95496 1.11921 1.20186 0.84027 0.95398 0.92719 1.83885 1.15129 1.33839 1.79621 1.21853 0.91056 0.83634 1.52790 0.87751 1.26611 0.95833 1.03757 0.95543 1.70140 1.07440 1.29937 1.47512 0.84650 0.76997 0.74706 0.79929 1.18113 1.19570 1.18165 1.21205 0.95467 0.97617 1.12521 1.21316 0.92435 0.98358 0.93861 0.91347 0.92114 0.92128 0.90532 0.90522 0.93352 0.90283 0.92538 0.92542 0.90291 0.93357 0.75077 0.83357 0.85827 0.82303 0.85923 0.91590 0.85757 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.21 71.98 0.66 -0.59 16 2 C -0.12 -1.15 5.10 30.59 0.16 -1.00 16 3 C 0.17 2.63 0.83 3.60 0.00 2.64 16 4 C -0.16 -2.85 8.05 71.98 0.58 -2.27 16 5 C -0.16 -2.86 8.05 71.98 0.58 -2.28 16 6 N -0.71 -12.14 5.10 -427.23 -2.18 -14.32 16 7 C 0.55 13.28 7.15 86.33 0.62 13.90 16 8 O -0.58 -18.08 12.43 -4.42 -0.05 -18.14 16 9 C -0.25 -5.61 9.41 23.62 0.22 -5.39 16 10 C 0.01 0.32 9.45 23.82 0.23 0.55 16 11 C -0.17 -5.32 5.87 -20.13 -0.12 -5.44 16 12 C -0.04 -1.21 9.40 22.55 0.21 -0.99 16 13 C -0.21 -8.30 9.97 22.34 0.22 -8.07 16 14 C 0.13 6.17 6.66 22.72 0.15 6.32 16 15 O -0.22 -12.77 9.74 -20.34 -0.20 -12.97 16 16 C -0.42 -23.59 9.48 67.93 0.64 -22.94 16 17 H 0.11 5.38 5.18 -2.92 -0.02 5.37 16 18 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 19 N -0.91 -54.50 13.67 21.62 0.30 -54.20 16 20 Si 1.02 41.61 29.55 68.60 2.03 43.63 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 C -0.25 -10.52 9.14 22.35 0.20 -10.31 16 25 C -0.04 -1.43 9.78 22.55 0.22 -1.21 16 26 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 28 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 29 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 1.18 6.16 -2.39 -0.01 1.17 16 32 H 0.08 1.11 6.43 -2.39 -0.02 1.09 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.11 6.43 -2.39 -0.02 1.10 16 36 H 0.05 1.18 6.16 -2.38 -0.01 1.17 16 37 H 0.41 4.65 8.45 -92.71 -0.78 3.87 16 38 H 0.15 2.59 6.07 -2.91 -0.02 2.57 16 39 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 40 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16 41 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.12 5.30 5.62 -2.91 -0.02 5.29 16 44 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -71.11 357.05 5.18 -65.93 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.24 Total: 27.73 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 5.05 Total: -37.66 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.88 Total: -68.52 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.25 Total: -31.11 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -71.11 5.18 -65.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036718949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.982 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds