Wall clock time and date at job start Tue Mar 31 2020 08:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47110 * 2 1 4 4 C 1.38544 * 119.85238 * 274.98957 * 3 2 1 5 5 C 1.38055 * 120.38609 * 179.76552 * 4 3 2 6 6 C 1.38707 * 120.08890 * 0.46723 * 5 4 3 7 7 O 1.35648 * 120.15103 * 179.78503 * 6 5 4 8 8 C 1.40142 * 119.69532 * 359.51611 * 6 5 4 9 9 C 1.47532 * 120.18885 * 180.27176 * 8 6 5 10 10 O 1.21590 * 120.00376 * 325.94012 * 9 8 6 11 11 N 1.34780 * 119.99872 * 145.93695 * 9 8 6 12 12 C 1.46502 * 120.00190 * 6.77348 * 11 9 8 13 13 C 1.50692 * 109.46974 * 103.69834 * 12 11 9 14 14 H 1.07999 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00092 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00060 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46922 * 90.00049 * 17 15 13 19 19 H 1.48501 * 109.47235 * 209.99643 * 17 15 13 20 20 H 1.48498 * 109.47425 * 330.00217 * 17 15 13 21 21 C 1.46499 * 119.99903 * 186.77770 * 11 9 8 22 22 C 1.53001 * 109.47520 * 85.10353 * 21 11 9 23 23 C 1.53006 * 117.49485 * 247.07196 * 22 21 11 24 24 C 1.52995 * 117.50028 * 178.41362 * 22 21 11 25 25 C 1.37785 * 119.84227 * 94.96838 * 3 2 1 26 26 H 1.09001 * 109.47169 * 299.99811 * 1 2 3 27 27 H 1.09005 * 109.46969 * 59.99867 * 1 2 3 28 28 H 1.09000 * 109.46670 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47169 * 240.00189 * 2 1 3 30 30 H 1.08996 * 109.47481 * 120.00453 * 2 1 3 31 31 H 1.08002 * 119.80669 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.95609 * 180.25428 * 5 4 3 33 33 H 0.96692 * 114.00907 * 269.72366 * 7 6 5 34 34 H 1.09000 * 109.47324 * 223.70600 * 12 11 9 35 35 H 1.09005 * 109.46756 * 343.69942 * 12 11 9 36 36 H 0.97001 * 120.00005 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.46802 * 205.09770 * 21 11 9 38 38 H 1.08994 * 109.47363 * 325.09559 * 21 11 9 39 39 H 1.09002 * 115.54672 * 32.73598 * 22 21 11 40 40 H 1.08996 * 117.50218 * 359.97438 * 23 22 21 41 41 H 1.08997 * 117.49550 * 145.02063 * 23 22 21 42 42 H 1.09003 * 117.50029 * 214.97842 * 24 22 21 43 43 H 1.08998 * 117.49969 * 359.97438 * 24 22 21 44 44 H 1.07995 * 120.05183 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1637 2.1059 -1.1971 5 6 2.6182 3.4094 -1.2094 6 6 2.9562 4.0394 -0.0208 7 8 3.4070 5.3187 -0.0319 8 6 2.8243 3.3500 1.1922 9 6 3.1749 4.0115 2.4634 10 8 4.0890 4.8125 2.5001 11 7 2.4820 3.7280 3.5841 12 6 1.4814 2.6579 3.5758 13 6 2.0413 1.4414 4.2667 14 1 3.0421 1.4631 4.6719 15 6 1.2757 0.3003 4.3815 16 7 0.0571 0.2736 3.8876 17 14 1.9695 -1.2075 5.2385 18 1 1.6482 -1.1452 6.6871 19 1 1.3686 -2.4315 4.6505 20 1 3.4432 -1.2445 5.0596 21 6 2.7293 4.4900 4.8107 22 6 1.8905 5.7695 4.7942 23 6 2.6362 7.1017 4.6929 24 6 1.9809 6.6893 6.0134 25 6 2.3585 2.0328 1.1907 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9050 1.6187 -2.1256 32 1 2.7141 3.9382 -2.1462 33 1 4.3675 5.3966 -0.1114 34 1 0.5862 2.9934 4.0993 35 1 1.2272 2.4063 2.5461 36 1 -0.4815 -0.5290 3.9687 37 1 2.4537 3.8861 5.6753 38 1 3.7863 4.7492 4.8706 39 1 0.9262 5.6929 4.2918 40 1 3.7242 7.0666 4.6385 41 1 2.1621 7.9017 4.1243 42 1 1.0762 7.2182 6.3131 43 1 2.6377 6.3827 6.8275 44 1 2.2546 1.4949 2.1214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094107408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:57 Heat of formation + Delta-G solvation = -20.420811 kcal Electronic energy + Delta-G solvation = -25780.343978 eV Core-core repulsion = 22278.076364 eV Total energy + Delta-G solvation = -3502.267614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.11263 -38.33016 -36.85883 -36.63643 -34.78696 -32.91885 -32.54148 -30.96677 -28.23353 -27.73481 -26.35771 -23.48565 -23.27193 -22.44110 -21.99079 -21.21568 -20.14127 -18.78040 -17.57117 -16.62872 -16.48925 -15.89788 -15.37083 -15.17318 -14.68122 -14.49198 -14.37191 -14.09543 -13.55962 -13.28094 -13.20427 -12.91661 -12.70411 -12.40769 -12.16442 -11.92363 -11.78970 -11.32926 -11.20700 -11.12954 -11.05253 -10.97123 -10.68185 -10.54283 -10.45185 -10.30922 -10.11282 -9.90603 -9.72216 -9.53258 -8.99654 -8.74493 -8.27193 -7.99279 -7.68952 -6.27849 -4.36662 1.38217 1.73797 3.16488 3.24740 3.27983 3.48479 3.81227 4.16270 4.22470 4.31699 4.65685 5.02378 5.11727 5.16367 5.21015 5.29520 5.32939 5.42903 5.60108 5.70946 5.84111 5.87551 5.90364 5.93322 6.03383 6.15574 6.21281 6.23633 6.30168 6.31429 6.42777 6.43994 6.60555 6.62709 6.66822 6.77795 6.81782 6.87270 7.08093 7.19584 7.32422 7.52683 7.66859 7.94343 8.06502 8.36037 8.71509 9.02223 9.31367 10.76657 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.007782 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.338638 B = 3597.191689 C = 5981.881457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.087 4.087 5 C -0.169 4.169 6 C 0.146 3.854 7 O -0.490 6.490 8 C -0.158 4.158 9 C 0.564 3.436 10 O -0.562 6.562 11 N -0.587 5.587 12 C 0.208 3.792 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.071 3.929 16 N -0.878 5.878 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.154 3.846 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.069 4.069 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.391 0.609 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 3.387 -5.781 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.106 4.106 4 C -0.105 4.105 5 C -0.188 4.188 6 C 0.100 3.900 7 O -0.300 6.300 8 C -0.161 4.161 9 C 0.353 3.647 10 O -0.444 6.444 11 N -0.316 5.316 12 C 0.088 3.912 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.134 4.134 16 N -0.515 5.515 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.030 3.970 22 C -0.179 4.179 23 C -0.209 4.209 24 C -0.218 4.218 25 C -0.087 4.087 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.248 0.752 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.764 3.811 -5.703 7.082 hybrid contribution 0.551 -0.931 0.412 1.158 sum 2.315 2.880 -5.291 6.454 Atomic orbital electron populations 1.21727 0.94593 1.01365 1.02537 1.20446 0.96498 0.92196 1.02312 1.19918 1.00987 0.96990 0.92674 1.20979 0.98042 0.93775 0.97709 1.21159 1.05151 0.95379 0.97100 1.18416 0.96947 0.83639 0.90966 1.84657 1.27483 1.21988 1.95896 1.20413 1.06467 0.95670 0.93563 1.18005 0.81915 0.81211 0.83534 1.90633 1.30524 1.36997 1.86207 1.47992 1.39654 1.35055 1.08865 1.20279 0.86828 0.83941 1.00107 1.21445 1.01397 0.97061 1.38297 0.91846 1.24932 0.94669 0.98680 0.95078 1.69923 1.08394 1.29144 1.44005 0.86578 0.79505 0.82061 0.79951 1.20436 1.20869 1.19660 1.20811 0.98391 0.90035 0.87751 1.22765 1.01269 0.92090 1.01802 1.22938 0.99892 0.98354 0.99708 1.22904 1.02832 1.04208 0.91906 1.22793 0.91147 0.93551 1.01166 0.90631 0.93685 0.93090 0.92063 0.90501 0.86163 0.85732 0.75249 0.95194 0.91376 0.92309 0.89581 0.91072 0.88064 0.88718 0.89598 0.89245 0.88961 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.88 16 2 C -0.08 -1.21 6.06 -27.88 -0.17 -1.38 16 3 C -0.11 -1.82 5.13 -104.67 -0.54 -2.36 16 4 C -0.09 -1.31 9.70 -39.54 -0.38 -1.69 16 5 C -0.17 -2.63 9.98 -39.48 -0.39 -3.02 16 6 C 0.15 2.67 6.68 -38.69 -0.26 2.41 16 7 O -0.49 -8.55 12.11 -36.75 -0.44 -9.00 16 8 C -0.16 -3.24 5.52 -104.84 -0.58 -3.81 16 9 C 0.56 12.51 7.25 -12.47 -0.09 12.42 16 10 O -0.56 -12.97 15.53 -12.82 -0.20 -13.17 16 11 N -0.59 -12.75 2.50 -176.29 -0.44 -13.19 16 12 C 0.21 4.84 4.66 -5.20 -0.02 4.82 16 13 C -0.54 -13.36 7.55 -34.44 -0.26 -13.62 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.74 5.45 -17.82 -0.10 1.65 16 16 N -0.88 -22.02 13.29 55.43 0.74 -21.28 16 17 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.15 2.97 5.63 -4.04 -0.02 2.95 16 22 C -0.16 -2.77 5.98 -90.62 -0.54 -3.31 16 23 C -0.17 -2.67 10.18 -26.69 -0.27 -2.95 16 24 C -0.18 -2.55 10.25 -26.70 -0.27 -2.82 16 25 C -0.07 -1.39 7.03 -39.20 -0.28 -1.67 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.39 5.37 9.06 45.56 0.41 5.79 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.63 3.82 -52.14 -0.20 1.43 16 36 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 37 H 0.09 1.65 7.94 -51.92 -0.41 1.24 16 38 H 0.07 1.39 7.23 -51.93 -0.38 1.01 16 39 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.19 4.30 3.86 -52.49 -0.20 4.09 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -27.50 364.71 -9.49 -36.99 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.81 Total: 14.03 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -3.81 Total: -14.27 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.30 Total: -34.47 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.64 Total: -22.17 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.50 -9.49 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.570 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds