Wall clock time and date at job start Tue Mar 31 2020 08:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47110 * 2 1 4 4 C 1.38544 * 119.85238 * 274.98957 * 3 2 1 5 5 C 1.38055 * 120.38609 * 179.76552 * 4 3 2 6 6 C 1.38707 * 120.08890 * 0.46723 * 5 4 3 7 7 O 1.35648 * 120.15103 * 179.78503 * 6 5 4 8 8 C 1.40142 * 119.69532 * 359.51611 * 6 5 4 9 9 C 1.47532 * 120.18885 * 180.27176 * 8 6 5 10 10 O 1.21590 * 120.00376 * 325.94012 * 9 8 6 11 11 N 1.34780 * 119.99872 * 145.93695 * 9 8 6 12 12 C 1.46502 * 120.00190 * 6.77348 * 11 9 8 13 13 C 1.50692 * 109.46974 * 103.69834 * 12 11 9 14 14 H 1.07999 * 120.00496 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00092 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00060 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46922 * 90.00049 * 17 15 13 19 19 H 1.48501 * 109.47235 * 209.99643 * 17 15 13 20 20 H 1.48498 * 109.47425 * 330.00217 * 17 15 13 21 21 C 1.46499 * 119.99903 * 186.77770 * 11 9 8 22 22 C 1.53001 * 109.47520 * 85.10353 * 21 11 9 23 23 C 1.53006 * 117.49485 * 247.07196 * 22 21 11 24 24 C 1.52995 * 117.50028 * 178.41362 * 22 21 11 25 25 C 1.37785 * 119.84227 * 94.96838 * 3 2 1 26 26 H 1.09001 * 109.47169 * 299.99811 * 1 2 3 27 27 H 1.09005 * 109.46969 * 59.99867 * 1 2 3 28 28 H 1.09000 * 109.46670 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47169 * 240.00189 * 2 1 3 30 30 H 1.08996 * 109.47481 * 120.00453 * 2 1 3 31 31 H 1.08002 * 119.80669 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.95609 * 180.25428 * 5 4 3 33 33 H 0.96692 * 114.00907 * 269.72366 * 7 6 5 34 34 H 1.09000 * 109.47324 * 223.70600 * 12 11 9 35 35 H 1.09005 * 109.46756 * 343.69942 * 12 11 9 36 36 H 0.97001 * 120.00005 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.46802 * 205.09770 * 21 11 9 38 38 H 1.08994 * 109.47363 * 325.09559 * 21 11 9 39 39 H 1.09002 * 115.54672 * 32.73598 * 22 21 11 40 40 H 1.08996 * 117.50218 * 359.97438 * 23 22 21 41 41 H 1.08997 * 117.49550 * 145.02063 * 23 22 21 42 42 H 1.09003 * 117.50029 * 214.97842 * 24 22 21 43 43 H 1.08998 * 117.49969 * 359.97438 * 24 22 21 44 44 H 1.07995 * 120.05183 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1637 2.1059 -1.1971 5 6 2.6182 3.4094 -1.2094 6 6 2.9562 4.0394 -0.0208 7 8 3.4070 5.3187 -0.0319 8 6 2.8243 3.3500 1.1922 9 6 3.1749 4.0115 2.4634 10 8 4.0890 4.8125 2.5001 11 7 2.4820 3.7280 3.5841 12 6 1.4814 2.6579 3.5758 13 6 2.0413 1.4414 4.2667 14 1 3.0421 1.4631 4.6719 15 6 1.2757 0.3003 4.3815 16 7 0.0571 0.2736 3.8876 17 14 1.9695 -1.2075 5.2385 18 1 1.6482 -1.1452 6.6871 19 1 1.3686 -2.4315 4.6505 20 1 3.4432 -1.2445 5.0596 21 6 2.7293 4.4900 4.8107 22 6 1.8905 5.7695 4.7942 23 6 2.6362 7.1017 4.6929 24 6 1.9809 6.6893 6.0134 25 6 2.3585 2.0328 1.1907 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9050 1.6187 -2.1256 32 1 2.7141 3.9382 -2.1462 33 1 4.3675 5.3966 -0.1114 34 1 0.5862 2.9934 4.0993 35 1 1.2272 2.4063 2.5461 36 1 -0.4815 -0.5290 3.9687 37 1 2.4537 3.8861 5.6753 38 1 3.7863 4.7492 4.8706 39 1 0.9262 5.6929 4.2918 40 1 3.7242 7.0666 4.6385 41 1 2.1621 7.9017 4.1243 42 1 1.0762 7.2182 6.3131 43 1 2.6377 6.3827 6.8275 44 1 2.2546 1.4949 2.1214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094107408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:49 Heat of formation + Delta-G solvation = -33.988418 kcal Electronic energy + Delta-G solvation = -25780.932313 eV Core-core repulsion = 22278.076364 eV Total energy + Delta-G solvation = -3502.855950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.78 seconds Orbital eigenvalues (eV) -41.63087 -39.81892 -38.27473 -38.00685 -36.49867 -34.48234 -34.14705 -32.37150 -29.73827 -29.36753 -27.95259 -25.22420 -24.57875 -24.00547 -23.21554 -22.58398 -21.54428 -20.31626 -19.02616 -18.51065 -18.05380 -17.50155 -16.78973 -16.54264 -16.35571 -16.09307 -15.80779 -15.46567 -15.03920 -14.74944 -14.60692 -14.46276 -14.18425 -13.96606 -13.59970 -13.33726 -13.32142 -12.95649 -12.80847 -12.61629 -12.41519 -12.37818 -12.28277 -12.02492 -11.91772 -11.73922 -11.69618 -11.40754 -11.33504 -10.89611 -10.69378 -10.52848 -9.76484 -9.48823 -9.30525 -8.18980 -6.34324 -0.02199 0.38370 1.40365 1.44033 1.52089 1.89483 2.22822 2.42316 2.77343 2.92711 3.08954 3.33618 3.67734 3.81361 3.94664 3.97593 4.02913 4.12878 4.33912 4.36973 4.44856 4.59676 4.64865 4.67387 4.73204 4.73554 4.79465 4.92191 4.93883 4.97630 5.08306 5.15616 5.22287 5.23730 5.25352 5.28458 5.35774 5.45328 5.52508 5.68317 5.75137 5.80854 5.96837 6.03011 6.56646 6.79261 6.82376 7.26756 7.38969 8.84974 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.007782 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.338638 B = 3597.191689 C = 5981.881457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.111 4.111 4 C -0.070 4.070 5 C -0.156 4.156 6 C 0.138 3.862 7 O -0.499 6.499 8 C -0.189 4.189 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.592 5.592 12 C 0.225 3.775 13 C -0.552 4.552 14 H 0.049 0.951 15 C 0.039 3.961 16 N -0.896 5.896 17 Si 0.946 3.054 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.275 1.275 21 C 0.153 3.847 22 C -0.187 4.187 23 C -0.169 4.169 24 C -0.150 4.150 25 C -0.090 4.090 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.405 0.595 34 H 0.004 0.996 35 H 0.067 0.933 36 H 0.270 0.730 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 3.148 -7.672 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.111 4.111 4 C -0.088 4.088 5 C -0.174 4.174 6 C 0.092 3.908 7 O -0.312 6.312 8 C -0.192 4.192 9 C 0.346 3.654 10 O -0.464 6.464 11 N -0.320 5.320 12 C 0.105 3.895 13 C -0.590 4.590 14 H 0.067 0.933 15 C -0.164 4.164 16 N -0.533 5.533 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.199 1.199 20 H -0.200 1.200 21 C 0.031 3.969 22 C -0.206 4.206 23 C -0.206 4.206 24 C -0.188 4.188 25 C -0.108 4.108 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.264 0.736 34 H 0.022 0.978 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.735 3.580 -7.583 8.563 hybrid contribution 0.576 -0.830 0.939 1.379 sum 2.312 2.750 -6.644 7.553 Atomic orbital electron populations 1.21656 0.94460 1.01931 1.01558 1.20468 0.96475 0.91396 1.02855 1.20142 1.00545 0.97817 0.92567 1.21411 0.95674 0.93402 0.98283 1.21535 1.03124 0.95491 0.97256 1.18643 0.97198 0.83839 0.91130 1.84611 1.28866 1.21801 1.95915 1.20467 1.08771 0.96332 0.93680 1.18425 0.81606 0.81115 0.84248 1.90588 1.31167 1.37978 1.86621 1.48050 1.39262 1.34978 1.09752 1.19975 0.86143 0.83925 0.99476 1.21442 1.00834 0.97978 1.38757 0.93276 1.25481 0.94874 1.00624 0.95440 1.69999 1.09075 1.29797 1.44409 0.85736 0.78630 0.79503 0.78940 1.20296 1.19935 1.19979 1.20859 0.98491 0.90829 0.86764 1.22592 1.00604 0.92049 1.05348 1.22953 0.99471 0.97082 1.01062 1.23030 1.03403 1.01309 0.91041 1.22504 0.93275 0.93640 1.01411 0.94617 0.91532 0.91786 0.88398 0.93008 0.81728 0.82079 0.73634 0.97838 0.91607 0.92064 0.90256 0.91575 0.89688 0.89363 0.88601 0.87084 0.87612 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.89 71.98 0.71 -3.41 16 2 C -0.07 -2.23 6.06 29.85 0.18 -2.05 16 3 C -0.11 -3.68 5.13 -19.90 -0.10 -3.78 16 4 C -0.07 -1.84 9.70 22.30 0.22 -1.62 16 5 C -0.16 -4.31 9.98 22.34 0.22 -4.09 16 6 C 0.14 4.90 6.68 22.84 0.15 5.06 16 7 O -0.50 -17.05 12.11 -72.32 -0.88 -17.93 16 8 C -0.19 -7.96 5.52 -20.01 -0.11 -8.07 16 9 C 0.56 25.79 7.25 86.69 0.63 26.42 16 10 O -0.58 -27.76 15.53 13.31 0.21 -27.55 16 11 N -0.59 -27.31 2.50 -829.92 -2.08 -29.38 16 12 C 0.22 11.18 4.66 85.63 0.40 11.57 16 13 C -0.55 -28.52 7.55 25.60 0.19 -28.32 16 14 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 15 C 0.04 1.97 5.45 84.66 0.46 2.43 16 16 N -0.90 -46.29 13.29 21.45 0.28 -46.00 16 17 Si 0.95 40.51 29.54 68.60 2.03 42.53 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.15 6.27 5.63 86.38 0.49 6.75 16 22 C -0.19 -6.65 5.98 -10.79 -0.06 -6.72 16 23 C -0.17 -5.20 10.18 30.62 0.31 -4.89 16 24 C -0.15 -4.07 10.25 30.62 0.31 -3.76 16 25 C -0.09 -3.74 7.03 22.52 0.16 -3.59 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 2.20 8.12 -2.39 -0.02 2.18 16 30 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 31 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.40 10.85 9.06 -74.06 -0.67 10.18 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.07 3.36 3.82 -2.59 -0.01 3.35 16 36 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 37 H 0.08 3.24 7.94 -2.38 -0.02 3.23 16 38 H 0.07 2.71 7.23 -2.39 -0.02 2.70 16 39 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.09 2.83 8.04 -2.39 -0.02 2.81 16 41 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.16 7.64 3.86 -2.91 -0.01 7.63 16 Total: -1.00 -62.22 364.71 4.07 -58.16 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: 0.34 Total: 38.24 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.16 Total: -18.07 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -1.79 Total: -75.38 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.67 Total: -45.48 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -62.22 4.07 -58.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.168 kcal (2) G-P(sol) polarization free energy of solvation -62.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.78 seconds