Wall clock time and date at job start Tue Mar 31 2020 09:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47622 * 2 1 4 4 C 1.38112 * 119.95356 * 264.99851 * 3 2 1 5 5 C 1.38511 * 120.40389 * 179.97438 * 4 3 2 6 6 C 1.37817 * 120.30270 * 359.97287 * 5 4 3 7 7 C 1.39722 * 119.90286 * 0.02971 * 6 5 4 8 8 C 1.47425 * 120.19984 * 180.02562 * 7 6 5 9 9 O 1.21631 * 120.00400 * 148.07603 * 8 7 6 10 10 N 1.34777 * 120.00204 * 328.07422 * 8 7 6 11 11 C 1.36910 * 119.99743 * 5.06183 * 10 8 7 12 12 H 1.07993 * 120.00369 * 122.60457 * 11 10 8 13 13 C 1.39030 * 119.99607 * 302.60300 * 11 10 8 14 14 N 1.31377 * 119.99483 * 173.08821 * 13 11 10 15 15 Si 1.86793 * 120.00109 * 353.09368 * 13 11 10 16 16 H 1.48494 * 109.47524 * 96.27965 * 15 13 11 17 17 H 1.48504 * 109.46954 * 216.28078 * 15 13 11 18 18 H 1.48504 * 109.47436 * 336.27467 * 15 13 11 19 19 C 1.46500 * 120.00423 * 185.06080 * 10 8 7 20 20 C 1.55234 * 110.46682 * 230.21365 * 19 10 8 21 21 C 1.54896 * 102.58935 * 203.39461 * 20 19 10 22 22 C 1.54261 * 104.30969 * 37.93024 * 21 20 19 23 23 C 1.53876 * 106.60191 * 336.32748 * 22 21 20 24 24 C 1.38643 * 119.95471 * 85.25144 * 3 2 1 25 25 O 1.35657 * 120.15230 * 0.05118 * 24 3 2 26 26 H 1.09005 * 109.47304 * 300.00651 * 1 2 3 27 27 H 1.09006 * 109.46791 * 60.00015 * 1 2 3 28 28 H 1.08996 * 109.47620 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47304 * 239.99348 * 2 1 3 30 30 H 1.09006 * 109.46791 * 119.99985 * 2 1 3 31 31 H 1.08006 * 119.80131 * 359.95205 * 4 3 2 32 32 H 1.08004 * 119.85085 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.05047 * 180.02562 * 6 5 4 34 34 H 0.97003 * 120.00079 * 179.97438 * 14 13 11 35 35 H 1.08999 * 110.43401 * 352.86326 * 19 10 8 36 36 H 1.08998 * 110.90027 * 85.09955 * 20 19 10 37 37 H 1.09000 * 110.76873 * 321.62288 * 20 19 10 38 38 H 1.09002 * 110.48158 * 279.18774 * 21 20 19 39 39 H 1.08997 * 110.48683 * 156.67319 * 21 20 19 40 40 H 1.09006 * 110.03166 * 95.60977 * 22 21 20 41 41 H 1.09001 * 110.03762 * 216.99032 * 22 21 20 42 42 H 1.08998 * 110.03093 * 119.28326 * 23 22 21 43 43 H 1.08998 * 110.03333 * 240.66579 * 23 22 21 44 44 H 0.96706 * 113.99647 * 270.27245 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0362 -1.1921 5 6 2.8229 3.3418 -1.2030 6 6 2.9595 4.0410 -0.0232 7 6 2.6311 3.4309 1.1901 8 6 2.7742 4.1729 2.4559 9 8 2.0163 3.9498 3.3807 10 7 3.7448 5.0985 2.5885 11 6 4.5313 5.4241 1.5162 12 1 4.5828 6.4475 1.1752 13 6 5.2636 4.4371 0.8662 14 7 5.9099 4.7211 -0.2418 15 14 5.3286 2.7073 1.5683 16 1 4.3115 1.8610 0.8944 17 1 6.6791 2.1322 1.3432 18 1 5.0471 2.7536 3.0257 19 6 3.9583 5.7563 3.8800 20 6 4.0087 7.2976 3.7023 21 6 4.8124 7.7546 4.9451 22 6 5.8894 6.6649 5.1245 23 6 5.3464 5.3944 4.4473 24 6 2.1695 2.1066 1.1971 25 8 1.8532 1.5013 2.3693 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8932 -0.5139 0.8901 31 1 2.2567 1.4959 -2.1215 32 1 3.0774 3.8142 -2.1403 33 1 3.3198 5.0590 -0.0365 34 1 6.4212 4.0326 -0.6951 35 1 3.1740 5.4771 4.5835 36 1 3.0054 7.7233 3.7132 37 1 4.5325 7.5640 2.7843 38 1 4.1661 7.8003 5.8217 39 1 5.2769 8.7239 4.7638 40 1 6.8181 6.9754 4.6457 41 1 6.0603 6.4797 6.1850 42 1 6.0116 5.0883 3.6399 43 1 5.2538 4.5917 5.1789 44 1 0.9302 1.6153 2.6342 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094162329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:09 Heat of formation + Delta-G solvation = -43.647952 kcal Electronic energy + Delta-G solvation = -26586.383921 eV Core-core repulsion = 23083.109102 eV Total energy + Delta-G solvation = -3503.274818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.13871 -38.57943 -36.66910 -36.14135 -34.44214 -33.40779 -31.85689 -29.86597 -28.49530 -28.10097 -27.07828 -24.84446 -23.46129 -22.91245 -20.79824 -20.11421 -19.79295 -19.16512 -17.58382 -17.19634 -16.01822 -15.75107 -15.27876 -15.20657 -14.68987 -14.18226 -14.07358 -13.75322 -13.61393 -13.49314 -13.23642 -12.87887 -12.57664 -12.43781 -12.18329 -11.89914 -11.51622 -11.47908 -11.23508 -11.11489 -11.08349 -10.72808 -10.66700 -10.60380 -10.50253 -10.14693 -10.04222 -9.90554 -9.82616 -9.69629 -9.08528 -8.66482 -7.95489 -7.66528 -7.47362 -6.48071 -4.30019 1.61802 1.98802 3.24519 3.39240 3.48451 3.71870 4.19865 4.27903 4.57924 4.83595 4.86321 5.11541 5.22132 5.25162 5.28215 5.42456 5.53101 5.58300 5.78525 5.80738 5.91763 5.99463 6.03130 6.09622 6.13408 6.16539 6.20555 6.25160 6.29586 6.35911 6.41336 6.42735 6.48075 6.58489 6.70585 6.86334 6.91406 6.98873 7.07123 7.17405 7.25480 7.57430 7.67936 7.81194 8.26804 8.38808 8.95357 9.23853 9.69188 10.55186 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.006168 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.713358 B = 4538.163750 C = 5073.270316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.151 4.151 6 C -0.027 4.027 7 C -0.158 4.158 8 C 0.538 3.462 9 O -0.586 6.586 10 N -0.460 5.460 11 C -0.356 4.356 12 H 0.104 0.896 13 C 0.090 3.910 14 N -0.858 5.858 15 Si 0.840 3.160 16 H -0.235 1.235 17 H -0.295 1.295 18 H -0.262 1.262 19 C 0.135 3.865 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.132 4.132 24 C 0.157 3.843 25 O -0.487 6.487 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.176 0.824 34 H 0.276 0.724 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -2.145 0.269 5.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.169 4.169 6 C -0.045 4.045 7 C -0.162 4.162 8 C 0.329 3.671 9 O -0.471 6.471 10 N -0.180 5.180 11 C -0.483 4.483 12 H 0.122 0.878 13 C -0.119 4.119 14 N -0.491 5.491 15 Si 0.666 3.334 16 H -0.159 1.159 17 H -0.223 1.223 18 H -0.187 1.187 19 C 0.031 3.969 20 C -0.164 4.164 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.170 4.170 24 C 0.111 3.889 25 O -0.297 6.297 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.193 0.807 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.887 -2.463 0.583 5.504 hybrid contribution 0.122 -0.873 0.228 0.911 sum -4.766 -3.337 0.810 5.874 Atomic orbital electron populations 1.21704 0.95356 1.01063 1.01871 1.20320 0.95581 0.92870 1.02434 1.19856 1.05141 0.96994 0.92453 1.20957 0.98136 0.95253 0.96394 1.21101 1.02321 0.94807 0.98676 1.22405 0.89003 1.03412 0.89684 1.20246 1.06400 0.94053 0.95488 1.18239 0.80817 0.81483 0.86563 1.90587 1.45160 1.69351 1.41967 1.43476 1.29113 1.36372 1.09015 1.18801 1.25529 0.97286 1.06725 0.87824 1.25636 0.92812 0.98507 0.94960 1.69630 1.29080 1.34791 1.15625 0.87513 0.78256 0.85540 0.82086 1.15908 1.22270 1.18671 1.21913 0.96225 0.91979 0.86772 1.22791 0.99470 0.95398 0.98702 1.22270 0.97472 0.98003 0.98129 1.22031 0.98520 0.95496 0.99420 1.22419 0.98084 0.96669 0.99858 1.18165 0.96710 0.89280 0.84734 1.84644 1.33095 1.74822 1.37131 0.92893 0.92757 0.92847 0.91657 0.90967 0.86695 0.86098 0.80724 0.91322 0.89748 0.92433 0.89704 0.92326 0.92169 0.92049 0.92767 0.90309 0.93060 0.75702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.15 0.37 -1.36 16 2 C -0.07 -1.09 5.79 -27.88 -0.16 -1.25 16 3 C -0.14 -2.61 4.45 -104.52 -0.47 -3.08 16 4 C -0.09 -1.55 9.65 -39.53 -0.38 -1.93 16 5 C -0.15 -2.86 10.02 -39.63 -0.40 -3.26 16 6 C -0.03 -0.59 6.05 -39.18 -0.24 -0.83 16 7 C -0.16 -3.62 2.97 -104.85 -0.31 -3.93 16 8 C 0.54 13.31 5.82 -12.52 -0.07 13.24 16 9 O -0.59 -15.17 15.21 -13.38 -0.20 -15.37 16 10 N -0.46 -10.93 1.96 -106.98 -0.21 -11.14 16 11 C -0.36 -8.72 5.50 -14.99 -0.08 -8.81 16 12 H 0.10 2.64 6.95 -52.49 -0.36 2.28 16 13 C 0.09 2.28 3.04 -17.45 -0.05 2.22 16 14 N -0.86 -22.07 13.90 55.50 0.77 -21.30 16 15 Si 0.84 21.15 23.22 -169.99 -3.95 17.20 16 16 H -0.24 -5.81 4.09 56.52 0.23 -5.58 16 17 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 18 H -0.26 -7.10 7.01 56.52 0.40 -6.71 16 19 C 0.13 2.86 3.26 -66.09 -0.22 2.64 16 20 C -0.13 -2.26 6.39 -24.55 -0.16 -2.42 16 21 C -0.12 -1.82 6.82 -25.07 -0.17 -1.99 16 22 C -0.12 -1.87 6.80 -25.61 -0.17 -2.04 16 23 C -0.13 -2.63 6.43 -25.61 -0.16 -2.79 16 24 C 0.16 3.30 4.57 -38.68 -0.18 3.12 16 25 O -0.49 -9.88 11.19 -37.30 -0.42 -10.30 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 30 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 31 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.18 4.07 5.15 -52.49 -0.27 3.80 16 34 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.08 1.86 7.00 -51.93 -0.36 1.49 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.64 6.39 -51.93 -0.33 1.31 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.76 6.97 -51.93 -0.36 1.40 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.39 6.36 9.06 45.56 0.41 6.77 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -28.95 336.09 -7.85 -36.80 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.06 Total: 11.51 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.85 Total: -12.47 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.56 Total: -32.43 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.62 Total: -25.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -3.95 Total: 17.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.95 -7.85 -36.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094162329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.844 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds