Wall clock time and date at job start Tue Mar 31 2020 09:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47622 * 2 1 4 4 C 1.38112 * 119.95356 * 264.99851 * 3 2 1 5 5 C 1.38511 * 120.40389 * 179.97438 * 4 3 2 6 6 C 1.37817 * 120.30270 * 359.97287 * 5 4 3 7 7 C 1.39722 * 119.90286 * 0.02971 * 6 5 4 8 8 C 1.47425 * 120.19984 * 180.02562 * 7 6 5 9 9 O 1.21631 * 120.00400 * 148.07603 * 8 7 6 10 10 N 1.34777 * 120.00204 * 328.07422 * 8 7 6 11 11 C 1.36910 * 119.99743 * 5.06183 * 10 8 7 12 12 H 1.07993 * 120.00369 * 122.60457 * 11 10 8 13 13 C 1.39030 * 119.99607 * 302.60300 * 11 10 8 14 14 N 1.31377 * 119.99483 * 173.08821 * 13 11 10 15 15 Si 1.86793 * 120.00109 * 353.09368 * 13 11 10 16 16 H 1.48494 * 109.47524 * 96.27965 * 15 13 11 17 17 H 1.48504 * 109.46954 * 216.28078 * 15 13 11 18 18 H 1.48504 * 109.47436 * 336.27467 * 15 13 11 19 19 C 1.46500 * 120.00423 * 185.06080 * 10 8 7 20 20 C 1.55234 * 110.46682 * 230.21365 * 19 10 8 21 21 C 1.54896 * 102.58935 * 203.39461 * 20 19 10 22 22 C 1.54261 * 104.30969 * 37.93024 * 21 20 19 23 23 C 1.53876 * 106.60191 * 336.32748 * 22 21 20 24 24 C 1.38643 * 119.95471 * 85.25144 * 3 2 1 25 25 O 1.35657 * 120.15230 * 0.05118 * 24 3 2 26 26 H 1.09005 * 109.47304 * 300.00651 * 1 2 3 27 27 H 1.09006 * 109.46791 * 60.00015 * 1 2 3 28 28 H 1.08996 * 109.47620 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47304 * 239.99348 * 2 1 3 30 30 H 1.09006 * 109.46791 * 119.99985 * 2 1 3 31 31 H 1.08006 * 119.80131 * 359.95205 * 4 3 2 32 32 H 1.08004 * 119.85085 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.05047 * 180.02562 * 6 5 4 34 34 H 0.97003 * 120.00079 * 179.97438 * 14 13 11 35 35 H 1.08999 * 110.43401 * 352.86326 * 19 10 8 36 36 H 1.08998 * 110.90027 * 85.09955 * 20 19 10 37 37 H 1.09000 * 110.76873 * 321.62288 * 20 19 10 38 38 H 1.09002 * 110.48158 * 279.18774 * 21 20 19 39 39 H 1.08997 * 110.48683 * 156.67319 * 21 20 19 40 40 H 1.09006 * 110.03166 * 95.60977 * 22 21 20 41 41 H 1.09001 * 110.03762 * 216.99032 * 22 21 20 42 42 H 1.08998 * 110.03093 * 119.28326 * 23 22 21 43 43 H 1.08998 * 110.03333 * 240.66579 * 23 22 21 44 44 H 0.96706 * 113.99647 * 270.27245 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0362 -1.1921 5 6 2.8229 3.3418 -1.2030 6 6 2.9595 4.0410 -0.0232 7 6 2.6311 3.4309 1.1901 8 6 2.7742 4.1729 2.4559 9 8 2.0163 3.9498 3.3807 10 7 3.7448 5.0985 2.5885 11 6 4.5313 5.4241 1.5162 12 1 4.5828 6.4475 1.1752 13 6 5.2636 4.4371 0.8662 14 7 5.9099 4.7211 -0.2418 15 14 5.3286 2.7073 1.5683 16 1 4.3115 1.8610 0.8944 17 1 6.6791 2.1322 1.3432 18 1 5.0471 2.7536 3.0257 19 6 3.9583 5.7563 3.8800 20 6 4.0087 7.2976 3.7023 21 6 4.8124 7.7546 4.9451 22 6 5.8894 6.6649 5.1245 23 6 5.3464 5.3944 4.4473 24 6 2.1695 2.1066 1.1971 25 8 1.8532 1.5013 2.3693 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8932 -0.5139 0.8901 31 1 2.2567 1.4959 -2.1215 32 1 3.0774 3.8142 -2.1403 33 1 3.3198 5.0590 -0.0365 34 1 6.4212 4.0326 -0.6951 35 1 3.1740 5.4771 4.5835 36 1 3.0054 7.7233 3.7132 37 1 4.5325 7.5640 2.7843 38 1 4.1661 7.8003 5.8217 39 1 5.2769 8.7239 4.7638 40 1 6.8181 6.9754 4.6457 41 1 6.0603 6.4797 6.1850 42 1 6.0116 5.0883 3.6399 43 1 5.2538 4.5917 5.1789 44 1 0.9302 1.6153 2.6342 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094162329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:04 Heat of formation + Delta-G solvation = -60.534145 kcal Electronic energy + Delta-G solvation = -26587.116161 eV Core-core repulsion = 23083.109102 eV Total energy + Delta-G solvation = -3504.007059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 5.30 seconds Orbital eigenvalues (eV) -41.82393 -40.19859 -38.30970 -37.72732 -36.19911 -34.74249 -33.77034 -31.39181 -29.89913 -29.57826 -28.63049 -26.74883 -24.78783 -24.44330 -22.28173 -21.65198 -21.36121 -20.85005 -19.19042 -18.93435 -17.70645 -17.57213 -16.85080 -16.70613 -16.20462 -15.87743 -15.79979 -15.47929 -15.13517 -14.87303 -14.69877 -14.45597 -14.18818 -13.90453 -13.71702 -13.54643 -13.09543 -12.98545 -12.85217 -12.74781 -12.49525 -12.31465 -12.06461 -11.99682 -11.91948 -11.78901 -11.72664 -11.45596 -11.39115 -11.25353 -11.00103 -10.50197 -9.61990 -9.33768 -9.23585 -8.48804 -6.27344 0.01986 0.45575 1.19533 1.31736 1.42550 1.95103 2.17715 2.58719 2.87510 2.93465 3.34220 3.77747 3.82233 3.86061 3.94553 4.08420 4.15260 4.36091 4.47770 4.52453 4.58339 4.61028 4.63693 4.68466 4.69734 4.70607 4.87269 4.88940 4.96750 5.06064 5.10214 5.11592 5.20695 5.22283 5.34427 5.38022 5.40214 5.53160 5.57301 5.58258 5.68880 5.75286 5.90651 6.04944 6.40377 6.79961 6.98463 7.31901 7.78532 8.57242 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.006168 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.713358 B = 4538.163750 C = 5073.270316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.151 4.151 6 C -0.040 4.040 7 C -0.190 4.190 8 C 0.525 3.475 9 O -0.610 6.610 10 N -0.466 5.466 11 C -0.341 4.341 12 H 0.092 0.908 13 C 0.085 3.915 14 N -0.873 5.873 15 Si 0.872 3.128 16 H -0.226 1.226 17 H -0.304 1.304 18 H -0.297 1.297 19 C 0.121 3.879 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.131 4.131 24 C 0.142 3.858 25 O -0.500 6.500 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.159 0.841 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.279 0.721 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -2.701 -0.620 6.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.142 4.142 4 C -0.096 4.096 5 C -0.169 4.169 6 C -0.059 4.059 7 C -0.193 4.193 8 C 0.316 3.684 9 O -0.497 6.497 10 N -0.186 5.186 11 C -0.468 4.468 12 H 0.110 0.890 13 C -0.122 4.122 14 N -0.508 5.508 15 Si 0.700 3.300 16 H -0.149 1.149 17 H -0.233 1.233 18 H -0.224 1.224 19 C 0.018 3.982 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.170 4.170 24 C 0.096 3.904 25 O -0.312 6.312 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.403 -3.009 -0.315 6.192 hybrid contribution 0.192 -0.741 0.515 0.923 sum -5.211 -3.751 0.199 6.424 Atomic orbital electron populations 1.21676 0.93358 1.02619 1.01887 1.20418 0.97242 0.90324 1.03114 1.20321 1.03707 0.98596 0.91529 1.21422 0.95795 0.94529 0.97825 1.21356 1.01629 0.95556 0.98330 1.22150 0.90478 1.02683 0.90560 1.20282 1.08930 0.95260 0.94858 1.18744 0.80644 0.81659 0.87305 1.90538 1.45994 1.70140 1.43009 1.43639 1.28795 1.36417 1.09747 1.18583 1.24849 0.96515 1.06900 0.89032 1.25644 0.93008 0.98595 0.94992 1.69635 1.30084 1.35036 1.16091 0.87131 0.77463 0.85718 0.79646 1.14888 1.23254 1.22384 1.22167 0.96458 0.94046 0.85536 1.22726 1.00360 0.92923 0.99745 1.22260 0.96918 0.98556 0.97030 1.22019 0.98784 0.93477 1.00508 1.22394 0.96888 0.98758 0.98967 1.18431 0.97121 0.89026 0.85854 1.84594 1.34425 1.74623 1.37510 0.93685 0.91992 0.90548 0.89263 0.92003 0.82349 0.84088 0.83072 0.91087 0.91034 0.91761 0.91306 0.90456 0.89696 0.91509 0.90218 0.93333 0.93751 0.74233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.07 -1.92 5.79 29.85 0.17 -1.75 16 3 C -0.14 -4.80 4.45 -19.80 -0.09 -4.89 16 4 C -0.08 -2.44 9.65 22.30 0.22 -2.23 16 5 C -0.15 -5.45 10.02 22.24 0.22 -5.23 16 6 C -0.04 -1.76 6.05 22.53 0.14 -1.63 16 7 C -0.19 -8.83 2.97 -20.01 -0.06 -8.89 16 8 C 0.52 26.92 5.82 86.66 0.50 27.43 16 9 O -0.61 -32.85 15.21 13.68 0.21 -32.65 16 10 N -0.47 -23.03 1.96 -610.62 -1.20 -24.23 16 11 C -0.34 -17.25 5.50 84.09 0.46 -16.79 16 12 H 0.09 4.84 6.95 -2.91 -0.02 4.82 16 13 C 0.09 4.39 3.04 84.95 0.26 4.65 16 14 N -0.87 -45.23 13.90 21.68 0.30 -44.93 16 15 Si 0.87 44.66 23.22 68.60 1.59 46.26 16 16 H -0.23 -11.08 4.09 99.48 0.41 -10.68 16 17 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 18 H -0.30 -16.85 7.01 99.48 0.70 -16.15 16 19 C 0.12 5.28 3.26 46.19 0.15 5.43 16 20 C -0.12 -4.29 6.39 32.01 0.20 -4.08 16 21 C -0.11 -3.07 6.82 31.67 0.22 -2.85 16 22 C -0.11 -3.35 6.80 31.32 0.21 -3.14 16 23 C -0.13 -5.36 6.43 31.32 0.20 -5.16 16 24 C 0.14 5.91 4.57 22.85 0.10 6.01 16 25 O -0.50 -20.47 11.19 -71.92 -0.80 -21.27 16 26 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.92 8.05 -2.38 -0.02 1.90 16 30 H 0.06 1.76 7.68 -2.38 -0.02 1.74 16 31 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.15 7.26 5.15 -2.91 -0.02 7.24 16 34 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.07 3.27 7.00 -2.39 -0.02 3.25 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.69 6.39 -2.39 -0.02 2.68 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.25 6.97 -2.39 -0.02 2.23 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.40 13.36 9.06 -74.05 -0.67 12.69 16 Total: -1.00 -64.78 336.09 3.75 -61.02 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.03 Total: 31.11 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 3.63 Total: -15.31 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.90 Total: -69.16 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.60 Total: -53.92 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.59 Total: 46.26 kcal Total: -64.78 3.75 -61.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094162329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.490 kcal (2) G-P(sol) polarization free energy of solvation -64.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.30 seconds