Wall clock time and date at job start Tue Mar 31 2020 08:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 C 1.50703 * 110.01497 * 303.55264 * 3 2 1 5 5 O 1.21290 * 119.99830 * 125.60693 * 4 3 2 6 6 N 1.34778 * 119.99853 * 305.60468 * 4 3 2 7 7 C 1.39993 * 119.99900 * 175.48519 * 6 4 3 8 8 C 1.38919 * 120.00705 * 214.85311 * 7 6 4 9 9 C 1.38000 * 120.00261 * 179.76326 * 8 7 6 10 10 C 1.38911 * 119.99870 * 0.49613 * 9 8 7 11 11 O 1.35779 * 119.99895 * 179.74496 * 10 9 8 12 12 C 1.34810 * 117.00150 * 185.69002 * 11 10 9 13 13 H 1.08006 * 119.99769 * 5.39836 * 12 11 10 14 14 C 1.38630 * 120.00401 * 185.39507 * 12 11 10 15 15 N 1.31569 * 120.00386 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99626 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47123 * 90.00005 * 16 14 12 18 18 H 1.48507 * 109.46998 * 209.99823 * 16 14 12 19 19 H 1.48498 * 109.47141 * 329.99525 * 16 14 12 20 20 C 1.38905 * 120.00377 * 359.75574 * 10 9 8 21 21 C 1.38002 * 120.00014 * 0.02562 * 20 10 9 22 22 C 1.54264 * 110.02834 * 182.11584 * 3 2 1 23 23 C 1.54895 * 104.19265 * 217.10169 * 22 3 2 24 24 C 1.54895 * 102.74785 * 37.94057 * 23 22 3 25 25 C 1.53869 * 110.03561 * 64.94525 * 3 2 1 26 26 H 1.09002 * 109.47058 * 175.04056 * 1 2 3 27 27 H 1.08999 * 109.47017 * 55.03562 * 1 2 3 28 28 H 1.08997 * 109.46938 * 295.03593 * 1 2 3 29 29 H 1.08996 * 109.46947 * 119.99840 * 2 1 3 30 30 H 1.08995 * 109.47205 * 239.99866 * 2 1 3 31 31 H 0.97000 * 120.00498 * 355.49768 * 6 4 3 32 32 H 1.08002 * 119.99425 * 0.02562 * 8 7 6 33 33 H 1.07994 * 120.00346 * 180.20921 * 9 8 7 34 34 H 0.96999 * 120.00342 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.00379 * 179.97438 * 20 10 9 36 36 H 1.08010 * 119.99974 * 179.97438 * 21 20 10 37 37 H 1.09000 * 110.48882 * 335.77884 * 22 3 2 38 38 H 1.08998 * 110.49104 * 98.42628 * 22 3 2 39 39 H 1.08998 * 110.75616 * 279.63010 * 23 22 3 40 40 H 1.09004 * 110.75684 * 156.25265 * 23 22 3 41 41 H 1.08998 * 110.48268 * 203.37901 * 24 23 22 42 42 H 1.09000 * 110.48183 * 80.73613 * 24 23 22 43 43 H 1.09001 * 110.03207 * 238.57301 * 25 3 2 44 44 H 1.09005 * 110.02970 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4741 2.1897 -1.1801 5 8 0.8759 3.2308 -1.0085 6 7 1.6326 1.7011 -2.4261 7 6 1.0270 2.3438 -3.5123 8 6 0.5469 1.5978 -4.5814 9 6 -0.0545 2.2311 -5.6499 10 6 -0.1705 3.6153 -5.6612 11 8 -0.7576 4.2387 -6.7149 12 6 -0.7333 5.5866 -6.7196 13 1 -0.1867 6.1195 -5.9555 14 6 -1.4099 6.2887 -7.7050 15 7 -1.3858 7.6042 -7.7099 16 14 -2.3558 5.3670 -9.0261 17 1 -3.7525 5.1467 -8.5722 18 1 -2.3623 6.1652 -10.2783 19 1 -1.7046 4.0564 -9.2779 20 6 0.3142 4.3617 -4.5947 21 6 0.9116 3.7281 -3.5241 22 6 3.5816 1.4579 -0.0535 23 6 3.9813 2.6481 0.8537 24 6 2.9502 2.5606 2.0063 25 6 1.6386 2.1436 1.3095 26 1 -0.3633 -1.0238 -0.0888 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3633 0.4349 0.9311 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.1662 0.9040 -2.5703 32 1 0.6405 0.5219 -4.5743 33 1 -0.4308 1.6509 -6.4794 34 1 -1.8595 8.0954 -8.3992 35 1 0.2244 5.4379 -4.6037 36 1 1.2888 4.3086 -2.6950 37 1 3.9864 0.5255 0.3401 38 1 3.9264 1.6237 -1.0742 39 1 3.8827 3.5922 0.3181 40 1 4.9956 2.5216 1.2324 41 1 2.8341 3.5311 2.4887 42 1 3.2530 1.8063 2.7325 43 1 1.0350 3.0247 1.0915 44 1 1.0800 1.4563 1.9449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:56 Heat of formation + Delta-G solvation = -52.607217 kcal Electronic energy + Delta-G solvation = -24786.856850 eV Core-core repulsion = 21283.193528 eV Total energy + Delta-G solvation = -3503.663321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91491 -39.13853 -37.75494 -36.37667 -34.21822 -33.26454 -32.29622 -30.28001 -29.33912 -28.34647 -27.62747 -25.16510 -23.17587 -22.95982 -22.16586 -21.08966 -20.44102 -19.08658 -17.92850 -17.55043 -16.89046 -16.46366 -15.96219 -15.40131 -14.91060 -14.54603 -14.04527 -13.90173 -13.85989 -13.79155 -13.56043 -13.49723 -13.09907 -12.76048 -12.42969 -12.26923 -12.22354 -11.75585 -11.64916 -11.56829 -11.44279 -11.32850 -11.22056 -10.93197 -10.88899 -10.79835 -10.74406 -10.60990 -10.22107 -9.64142 -9.54435 -9.23343 -8.74971 -8.27378 -7.04620 -6.39781 -4.05495 2.01394 2.13081 2.83778 3.23143 3.25871 3.28371 3.41185 4.19225 4.24954 4.33990 4.43591 4.50388 4.83219 4.87943 4.91059 4.96994 5.03978 5.10719 5.21353 5.31575 5.42880 5.46754 5.53073 5.56567 5.60156 5.66256 5.69283 5.73962 5.83669 5.87420 5.98951 6.02807 6.09749 6.10831 6.13344 6.27542 6.28516 6.61388 6.78117 6.92473 7.13329 7.31615 7.57520 7.70581 7.80909 8.04293 8.38118 8.95334 9.57370 10.67941 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.003094 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.697849 B = 9048.521318 C = 9522.674529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.081 4.081 4 C 0.521 3.479 5 O -0.522 6.522 6 N -0.661 5.661 7 C 0.045 3.955 8 C -0.097 4.097 9 C -0.177 4.177 10 C 0.151 3.849 11 O -0.217 6.217 12 C -0.388 4.388 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.206 4.206 21 C -0.067 4.067 22 C -0.114 4.114 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.279 0.721 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -16.251 16.282 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.145 4.145 3 C -0.084 4.084 4 C 0.308 3.692 5 O -0.397 6.397 6 N -0.306 5.306 7 C -0.048 4.048 8 C -0.117 4.117 9 C -0.197 4.197 10 C 0.098 3.902 11 O -0.122 6.122 12 C -0.464 4.464 13 H 0.124 0.876 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.226 4.226 21 C -0.087 4.087 22 C -0.151 4.151 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.153 4.153 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.235 0.765 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.680 -15.381 16.115 23.908 hybrid contribution -0.185 -0.547 -0.652 0.871 sum 8.495 -15.928 15.463 23.769 Atomic orbital electron populations 1.21877 0.95199 1.01899 1.02698 1.21618 0.96601 0.93694 1.02561 1.21499 0.96455 0.96001 0.94429 1.20423 0.79425 0.85578 0.83749 1.90679 1.41207 1.23006 1.84828 1.43222 1.51453 1.30432 1.05443 1.17336 1.06044 0.91648 0.89728 1.20348 0.99394 0.98139 0.93829 1.19974 1.07492 0.91810 1.00450 1.19155 0.92399 0.91581 0.87033 1.83577 1.67820 1.22460 1.38319 1.20768 1.33312 0.76953 1.15349 0.87648 1.24469 0.96599 0.94976 0.97999 1.69655 1.41942 1.05334 1.34784 0.86175 0.80278 0.80309 0.80093 1.19916 1.20801 1.18337 1.21236 1.05525 1.01297 0.94557 1.20912 0.97873 0.92449 0.97489 1.22478 0.92347 0.99588 1.00730 1.22507 0.98747 0.98505 0.96584 1.22333 0.94897 1.01260 0.97421 1.22278 0.98152 1.01521 0.93391 0.92406 0.92269 0.92249 0.90797 0.91618 0.76494 0.86652 0.86116 0.91060 0.84631 0.85525 0.90400 0.91240 0.91200 0.91363 0.91501 0.91804 0.89115 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.45 37.16 0.35 -1.13 16 2 C -0.11 -0.84 4.52 -26.73 -0.12 -0.96 16 3 C -0.08 -0.79 0.54 -154.54 -0.08 -0.87 16 4 C 0.52 7.21 4.77 -10.98 -0.05 7.16 16 5 O -0.52 -9.44 12.66 5.55 0.07 -9.37 16 6 N -0.66 -8.76 5.04 -9.82 -0.05 -8.81 16 7 C 0.04 0.77 6.30 -83.62 -0.53 0.25 16 8 C -0.10 -1.60 9.96 -39.42 -0.39 -2.00 16 9 C -0.18 -3.47 9.99 -39.42 -0.39 -3.86 16 10 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 11 O -0.22 -5.76 8.58 0.02 0.00 -5.76 16 12 C -0.39 -11.09 9.90 30.88 0.31 -10.79 16 13 H 0.11 3.10 5.52 -52.48 -0.29 2.81 16 14 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 15 N -0.88 -25.70 13.96 55.48 0.77 -24.93 16 16 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.21 -4.68 9.13 -39.42 -0.36 -5.04 16 21 C -0.07 -1.35 8.69 -39.41 -0.34 -1.70 16 22 C -0.11 -0.92 5.89 -25.07 -0.15 -1.07 16 23 C -0.13 -1.08 6.91 -24.73 -0.17 -1.25 16 24 C -0.12 -1.02 6.83 -25.07 -0.17 -1.20 16 25 C -0.12 -1.16 5.59 -25.62 -0.14 -1.31 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 28 H 0.06 0.55 6.93 -51.93 -0.36 0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 7.52 -51.93 -0.39 0.05 16 31 H 0.40 3.92 8.14 -40.82 -0.33 3.59 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 34 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.14 3.25 5.70 -52.49 -0.30 2.95 16 36 H 0.13 2.57 6.23 -52.48 -0.33 2.24 16 37 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.07 0.59 7.72 -51.93 -0.40 0.18 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 1.17 6.40 -51.93 -0.33 0.84 16 44 H 0.07 0.60 6.67 -51.93 -0.35 0.26 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -31.61 349.71 -7.77 -39.38 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.36 Total: 6.09 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.60 Total: -18.82 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.73 Total: -33.73 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.07 Total: -15.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.61 -7.77 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.224 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds