Wall clock time and date at job start Tue Mar 31 2020 08:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 C 1.50703 * 110.01497 * 303.55264 * 3 2 1 5 5 O 1.21290 * 119.99830 * 125.60693 * 4 3 2 6 6 N 1.34778 * 119.99853 * 305.60468 * 4 3 2 7 7 C 1.39993 * 119.99900 * 175.48519 * 6 4 3 8 8 C 1.38919 * 120.00705 * 214.85311 * 7 6 4 9 9 C 1.38000 * 120.00261 * 179.76326 * 8 7 6 10 10 C 1.38911 * 119.99870 * 0.49613 * 9 8 7 11 11 O 1.35779 * 119.99895 * 179.74496 * 10 9 8 12 12 C 1.34810 * 117.00150 * 185.69002 * 11 10 9 13 13 H 1.08006 * 119.99769 * 5.39836 * 12 11 10 14 14 C 1.38630 * 120.00401 * 185.39507 * 12 11 10 15 15 N 1.31569 * 120.00386 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99626 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47123 * 90.00005 * 16 14 12 18 18 H 1.48507 * 109.46998 * 209.99823 * 16 14 12 19 19 H 1.48498 * 109.47141 * 329.99525 * 16 14 12 20 20 C 1.38905 * 120.00377 * 359.75574 * 10 9 8 21 21 C 1.38002 * 120.00014 * 0.02562 * 20 10 9 22 22 C 1.54264 * 110.02834 * 182.11584 * 3 2 1 23 23 C 1.54895 * 104.19265 * 217.10169 * 22 3 2 24 24 C 1.54895 * 102.74785 * 37.94057 * 23 22 3 25 25 C 1.53869 * 110.03561 * 64.94525 * 3 2 1 26 26 H 1.09002 * 109.47058 * 175.04056 * 1 2 3 27 27 H 1.08999 * 109.47017 * 55.03562 * 1 2 3 28 28 H 1.08997 * 109.46938 * 295.03593 * 1 2 3 29 29 H 1.08996 * 109.46947 * 119.99840 * 2 1 3 30 30 H 1.08995 * 109.47205 * 239.99866 * 2 1 3 31 31 H 0.97000 * 120.00498 * 355.49768 * 6 4 3 32 32 H 1.08002 * 119.99425 * 0.02562 * 8 7 6 33 33 H 1.07994 * 120.00346 * 180.20921 * 9 8 7 34 34 H 0.96999 * 120.00342 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.00379 * 179.97438 * 20 10 9 36 36 H 1.08010 * 119.99974 * 179.97438 * 21 20 10 37 37 H 1.09000 * 110.48882 * 335.77884 * 22 3 2 38 38 H 1.08998 * 110.49104 * 98.42628 * 22 3 2 39 39 H 1.08998 * 110.75616 * 279.63010 * 23 22 3 40 40 H 1.09004 * 110.75684 * 156.25265 * 23 22 3 41 41 H 1.08998 * 110.48268 * 203.37901 * 24 23 22 42 42 H 1.09000 * 110.48183 * 80.73613 * 24 23 22 43 43 H 1.09001 * 110.03207 * 238.57301 * 25 3 2 44 44 H 1.09005 * 110.02970 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4741 2.1897 -1.1801 5 8 0.8759 3.2308 -1.0085 6 7 1.6326 1.7011 -2.4261 7 6 1.0270 2.3438 -3.5123 8 6 0.5469 1.5978 -4.5814 9 6 -0.0545 2.2311 -5.6499 10 6 -0.1705 3.6153 -5.6612 11 8 -0.7576 4.2387 -6.7149 12 6 -0.7333 5.5866 -6.7196 13 1 -0.1867 6.1195 -5.9555 14 6 -1.4099 6.2887 -7.7050 15 7 -1.3858 7.6042 -7.7099 16 14 -2.3558 5.3670 -9.0261 17 1 -3.7525 5.1467 -8.5722 18 1 -2.3623 6.1652 -10.2783 19 1 -1.7046 4.0564 -9.2779 20 6 0.3142 4.3617 -4.5947 21 6 0.9116 3.7281 -3.5241 22 6 3.5816 1.4579 -0.0535 23 6 3.9813 2.6481 0.8537 24 6 2.9502 2.5606 2.0063 25 6 1.6386 2.1436 1.3095 26 1 -0.3633 -1.0238 -0.0888 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3633 0.4349 0.9311 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.1662 0.9040 -2.5703 32 1 0.6405 0.5219 -4.5743 33 1 -0.4308 1.6509 -6.4794 34 1 -1.8595 8.0954 -8.3992 35 1 0.2244 5.4379 -4.6037 36 1 1.2888 4.3086 -2.6950 37 1 3.9864 0.5255 0.3401 38 1 3.9264 1.6237 -1.0742 39 1 3.8827 3.5922 0.3181 40 1 4.9956 2.5216 1.2324 41 1 2.8341 3.5311 2.4887 42 1 3.2530 1.8063 2.7325 43 1 1.0350 3.0247 1.0915 44 1 1.0800 1.4563 1.9449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:55 Heat of formation + Delta-G solvation = -71.961504 kcal Electronic energy + Delta-G solvation = -24787.696115 eV Core-core repulsion = 21283.193528 eV Total energy + Delta-G solvation = -3504.502586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03137 -40.76755 -39.02266 -37.80384 -35.54419 -34.43785 -33.99608 -31.91730 -30.37024 -29.39338 -28.67248 -27.13025 -24.40684 -23.80352 -23.62951 -22.34027 -21.37891 -20.36879 -19.63787 -19.21408 -18.27493 -17.66020 -16.92709 -16.53662 -16.31905 -15.85451 -15.70195 -15.52291 -15.44018 -14.87549 -14.56034 -14.40672 -14.31901 -14.16508 -14.10264 -13.75492 -13.38450 -13.27954 -13.00668 -12.72404 -12.54080 -12.30403 -12.25565 -12.02043 -11.99277 -11.90915 -11.57713 -11.48004 -11.46619 -11.35738 -11.15056 -10.72615 -10.54974 -9.88569 -8.69365 -8.51080 -6.23654 0.45210 0.49415 1.31457 1.36068 1.52822 1.65725 2.11993 2.28034 2.73982 3.06912 3.09480 3.44682 3.58438 3.68789 3.98656 4.06961 4.10789 4.24560 4.31888 4.35708 4.44158 4.51333 4.59140 4.64051 4.70873 4.72493 4.79568 4.88933 4.93886 5.01908 5.08528 5.08941 5.16599 5.17944 5.22692 5.26996 5.33830 5.37669 5.42938 5.46817 5.52288 5.59097 5.72458 5.89615 6.18324 6.53877 6.82489 7.25199 7.55037 8.60978 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.003094 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.697849 B = 9048.521318 C = 9522.674529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.073 4.073 4 C 0.518 3.482 5 O -0.570 6.570 6 N -0.649 5.649 7 C 0.072 3.928 8 C -0.079 4.079 9 C -0.166 4.166 10 C 0.112 3.888 11 O -0.239 6.239 12 C -0.401 4.401 13 H 0.073 0.927 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.976 3.024 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.256 1.256 20 C -0.224 4.224 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.424 0.576 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.285 0.715 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -21.599 17.281 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.140 4.140 3 C -0.076 4.076 4 C 0.307 3.693 5 O -0.449 6.449 6 N -0.295 5.295 7 C -0.022 4.022 8 C -0.099 4.099 9 C -0.185 4.185 10 C 0.062 3.938 11 O -0.147 6.147 12 C -0.477 4.477 13 H 0.091 0.909 14 C -0.191 4.191 15 N -0.566 5.566 16 Si 0.798 3.202 17 H -0.192 1.192 18 H -0.191 1.191 19 H -0.180 1.180 20 C -0.243 4.243 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.168 4.168 24 C -0.156 4.156 25 C -0.157 4.157 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.263 0.737 32 H 0.191 0.809 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.046 -20.788 17.157 28.765 hybrid contribution -0.450 0.973 -0.621 1.239 sum 9.596 -19.815 16.536 27.535 Atomic orbital electron populations 1.21888 0.96618 1.02279 1.01009 1.21689 0.95214 0.92023 1.05068 1.21561 0.97691 0.96742 0.91639 1.21357 0.78202 0.84976 0.84743 1.90684 1.43231 1.25417 1.85544 1.43179 1.51276 1.30815 1.04260 1.17490 1.03466 0.90553 0.90669 1.20862 0.96686 1.00687 0.91654 1.20408 1.06275 0.89952 1.01880 1.19680 0.93811 0.93358 0.86912 1.83512 1.70194 1.20848 1.40112 1.20657 1.33640 0.78319 1.15114 0.90928 1.25363 0.97575 0.95839 1.00279 1.69751 1.43721 1.06869 1.36298 0.85140 0.78701 0.78987 0.77395 1.19203 1.19124 1.18008 1.21110 1.07127 1.00050 0.96055 1.20884 0.98689 0.94317 0.96504 1.22543 0.90510 1.00783 1.00768 1.22538 1.00048 0.97575 0.96656 1.22344 0.93873 1.01651 0.97698 1.22288 0.98767 1.00412 0.94249 0.90603 0.95498 0.92825 0.87922 0.89446 0.73670 0.80931 0.83661 0.90522 0.87933 0.86539 0.86860 0.91404 0.94201 0.89246 0.92451 0.89123 0.93045 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.45 71.98 0.68 -1.81 16 2 C -0.10 -1.11 4.52 30.60 0.14 -0.97 16 3 C -0.07 -1.22 0.54 -52.20 -0.03 -1.25 16 4 C 0.52 13.71 4.77 87.66 0.42 14.13 16 5 O -0.57 -21.38 12.66 -3.06 -0.04 -21.42 16 6 N -0.65 -15.35 5.04 -303.37 -1.53 -16.88 16 7 C 0.07 2.35 6.30 38.16 0.24 2.59 16 8 C -0.08 -2.31 9.96 22.38 0.22 -2.09 16 9 C -0.17 -6.13 9.99 22.37 0.22 -5.90 16 10 C 0.11 5.39 6.65 22.59 0.15 5.54 16 11 O -0.24 -13.26 8.58 -22.85 -0.20 -13.45 16 12 C -0.40 -24.53 9.90 67.91 0.67 -23.86 16 13 H 0.07 4.75 5.52 -2.91 -0.02 4.74 16 14 C 0.01 0.45 5.49 84.83 0.47 0.91 16 15 N -0.93 -57.00 13.96 21.61 0.30 -56.70 16 16 Si 0.98 46.05 28.62 68.60 1.96 48.01 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 20 C -0.22 -10.90 9.13 22.37 0.20 -10.70 16 21 C -0.08 -3.50 8.69 22.38 0.19 -3.31 16 22 C -0.11 -1.34 5.89 31.67 0.19 -1.15 16 23 C -0.13 -1.97 6.91 31.89 0.22 -1.75 16 24 C -0.12 -1.75 6.83 31.67 0.22 -1.53 16 25 C -0.12 -2.24 5.59 31.31 0.18 -2.06 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.03 0.58 6.96 -2.39 -0.02 0.56 16 28 H 0.05 0.87 6.93 -2.39 -0.02 0.86 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.61 7.52 -2.39 -0.02 0.60 16 31 H 0.42 6.21 8.14 -92.71 -0.75 5.45 16 32 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.29 16.03 8.31 -92.71 -0.77 15.25 16 35 H 0.10 5.58 5.70 -2.91 -0.02 5.57 16 36 H 0.12 5.08 6.23 -2.91 -0.02 5.06 16 37 H 0.11 0.70 7.85 -2.39 -0.02 0.68 16 38 H 0.07 0.89 7.72 -2.39 -0.02 0.87 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 1.39 6.40 -2.39 -0.02 1.37 16 44 H 0.08 1.29 6.67 -2.38 -0.02 1.27 16 Total: -1.00 -77.15 349.71 5.14 -72.00 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.26 Total: 21.63 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.38 Total: -33.21 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.23 Total: -73.57 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.23 Total: -34.87 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.96 Total: 48.01 kcal Total: -77.15 5.14 -72.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.042 kcal (2) G-P(sol) polarization free energy of solvation -77.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds