Wall clock time and date at job start Tue Mar 31 2020 09:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 C 1.52999 * 109.46869 * 185.27645 * 3 2 1 5 5 C 1.53001 * 115.54983 * 304.27217 * 4 3 2 6 6 N 1.46503 * 109.47129 * 269.58897 * 5 4 3 7 7 C 1.34767 * 120.00334 * 185.01448 * 6 5 4 8 8 O 1.21595 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.47534 * 120.00515 * 179.97438 * 7 6 5 10 10 C 1.39666 * 120.19301 * 0.02562 * 9 7 6 11 11 C 1.37828 * 119.91900 * 179.97438 * 10 9 7 12 12 C 1.38578 * 120.32431 * 359.97438 * 11 10 9 13 13 C 1.38025 * 120.40068 * 0.02562 * 12 11 10 14 14 C 1.38829 * 120.07007 * 359.97438 * 13 12 11 15 15 O 1.35525 * 120.16355 * 180.02562 * 14 13 12 16 16 C 1.34821 * 116.99324 * 354.18801 * 15 14 13 17 17 H 1.07991 * 120.00256 * 5.07468 * 16 15 14 18 18 C 1.38696 * 119.99698 * 185.06897 * 16 15 14 19 19 N 1.31524 * 120.00161 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00074 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47307 * 89.99959 * 20 18 16 22 22 H 1.48500 * 109.47067 * 210.00018 * 20 18 16 23 23 H 1.48501 * 109.46968 * 329.99658 * 20 18 16 24 24 C 1.52999 * 117.51950 * 89.97549 * 4 3 2 25 25 C 1.53000 * 60.00201 * 107.48068 * 24 4 3 26 26 H 1.09002 * 109.47316 * 300.00184 * 1 2 3 27 27 H 1.09004 * 109.47246 * 60.00043 * 1 2 3 28 28 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47190 * 240.00229 * 2 1 3 30 30 H 1.09004 * 109.47246 * 119.99957 * 2 1 3 31 31 H 1.09001 * 109.46854 * 65.27926 * 3 2 1 32 32 H 1.08999 * 109.46868 * 305.27605 * 3 2 1 33 33 H 1.09001 * 109.47342 * 149.59213 * 5 4 3 34 34 H 1.08992 * 109.47542 * 29.58933 * 5 4 3 35 35 H 0.97002 * 119.99941 * 5.01419 * 6 5 4 36 36 H 1.08002 * 120.04202 * 359.97438 * 10 9 7 37 37 H 1.07999 * 119.84091 * 179.97438 * 11 10 9 38 38 H 1.08001 * 119.80079 * 180.28146 * 12 11 10 39 39 H 1.07996 * 119.96641 * 180.02562 * 13 12 11 40 40 H 0.97000 * 119.99868 * 180.02562 * 19 18 16 41 41 H 1.09005 * 117.49802 * 214.97138 * 24 4 3 42 42 H 1.08995 * 117.49824 * 359.97438 * 24 4 3 43 43 H 1.08997 * 117.49370 * 252.51559 * 25 24 4 44 44 H 1.08995 * 117.51594 * 107.48531 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5642 1.4446 -0.1327 5 6 4.3194 0.6335 0.9222 6 7 4.6381 1.4942 2.0641 7 6 5.3925 1.0203 3.0753 8 8 5.8084 -0.1217 3.0402 9 6 5.7139 1.8872 4.2251 10 6 5.2379 3.1995 4.2700 11 6 5.5411 4.0043 5.3471 12 6 6.3164 3.5178 6.3876 13 6 6.7937 2.2231 6.3569 14 6 6.4983 1.3981 5.2801 15 8 6.9655 0.1264 5.2483 16 6 7.8105 -0.2399 6.2329 17 1 8.0217 0.4407 7.0442 18 6 8.4085 -1.4910 6.2037 19 7 9.2324 -1.8487 7.1645 20 14 8.0435 -2.6682 4.7999 21 1 9.0213 -2.4498 3.7039 22 1 8.1499 -4.0671 5.2867 23 1 6.6692 -2.4236 4.2934 24 6 4.1508 1.4865 -1.5451 25 6 4.2267 2.7237 -0.6482 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7558 1.9283 0.9335 32 1 1.6015 1.9829 -0.8390 33 1 5.2424 0.2461 0.4906 34 1 3.6977 -0.1972 1.2557 35 1 4.3060 2.4052 2.0924 36 1 4.6330 3.5832 3.4617 37 1 5.1728 5.0189 5.3803 38 1 6.5450 4.1543 7.2297 39 1 7.3968 1.8511 7.1719 40 1 9.6509 -2.7235 7.1439 41 1 5.0748 0.9363 -1.7229 42 1 3.4508 1.5123 -2.3802 43 1 3.5766 3.5636 -0.8933 44 1 5.2005 2.9876 -0.2357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160683740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:21 Heat of formation + Delta-G solvation = -24.943330 kcal Electronic energy + Delta-G solvation = -24643.008826 eV Core-core repulsion = 21140.545101 eV Total energy + Delta-G solvation = -3502.463725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.90651 -39.04270 -37.76933 -36.50005 -34.11676 -33.58205 -32.43778 -30.71070 -29.19015 -27.93240 -26.42621 -25.20641 -23.15480 -22.70898 -21.80261 -21.27082 -19.98889 -19.28256 -17.88953 -17.70485 -16.41419 -15.86091 -15.67477 -15.31715 -14.71217 -14.48069 -14.43069 -14.08535 -13.95474 -13.72563 -13.63091 -13.48536 -12.74399 -12.68970 -12.51736 -12.33806 -12.15719 -12.05808 -11.71848 -11.51872 -11.37993 -11.25853 -11.10636 -10.87277 -10.78697 -10.70995 -10.29852 -10.04723 -10.03033 -9.59176 -9.00856 -8.88009 -8.66937 -8.35946 -7.46722 -6.46126 -4.11172 1.59148 2.19801 3.28535 3.32688 3.38958 3.60231 3.67679 3.86471 4.36825 4.38885 4.49749 4.55083 4.66548 4.74709 4.77733 4.96385 5.07201 5.10228 5.20030 5.32007 5.40846 5.45102 5.49719 5.58563 5.61863 5.64786 5.71146 5.72129 5.83399 5.87147 5.94827 6.00701 6.05014 6.08302 6.10074 6.20186 6.38856 6.56411 6.81788 6.85700 7.02241 7.15698 7.49086 7.69008 7.95909 8.00751 8.88028 8.92371 9.53079 10.59033 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004288 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.231221 B = 6528.672447 C = 7767.539250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.140 4.140 5 C 0.158 3.842 6 N -0.737 5.737 7 C 0.559 3.441 8 O -0.520 6.520 9 C -0.226 4.226 10 C -0.041 4.041 11 C -0.221 4.221 12 C -0.051 4.051 13 C -0.227 4.227 14 C 0.201 3.799 15 O -0.166 6.166 16 C -0.397 4.397 17 H 0.108 0.892 18 C 0.072 3.928 19 N -0.870 5.870 20 Si 0.900 3.100 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.238 1.238 24 C -0.164 4.164 25 C -0.172 4.172 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.394 0.606 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.282 0.718 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.654 9.796 -13.971 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.116 4.116 4 C -0.141 4.141 5 C 0.034 3.966 6 N -0.392 5.392 7 C 0.349 3.651 8 O -0.396 6.396 9 C -0.231 4.231 10 C -0.060 4.060 11 C -0.240 4.240 12 C -0.070 4.070 13 C -0.246 4.246 14 C 0.143 3.857 15 O -0.066 6.066 16 C -0.472 4.472 17 H 0.125 0.875 18 C -0.133 4.133 19 N -0.506 5.506 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.161 1.161 24 C -0.201 4.201 25 C -0.209 4.209 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.223 8.518 -14.050 21.090 hybrid contribution -0.077 0.047 -0.316 0.328 sum -13.300 8.565 -14.365 21.369 Atomic orbital electron populations 1.21770 0.95954 1.01619 1.01567 1.21550 0.95527 0.96720 1.02580 1.21128 0.91204 0.97228 1.02026 1.21761 0.95179 1.01285 0.95829 1.20754 0.98547 0.92308 0.84979 1.45880 1.55593 1.16605 1.21128 1.18202 0.77881 0.87074 0.81936 1.90855 1.51798 1.18328 1.78625 1.18877 1.11617 0.95573 0.96987 1.20762 0.96344 0.91802 0.97049 1.20537 1.06759 0.99963 0.96776 1.20964 0.94345 0.94612 0.97063 1.21284 1.07543 0.94979 1.00818 1.19029 0.90677 0.84365 0.91587 1.83787 1.53495 1.22269 1.47032 1.20929 1.21457 1.02614 1.02159 0.87455 1.24489 0.94124 0.96936 0.97799 1.69642 1.27109 1.21900 1.31949 0.86203 0.82264 0.78048 0.81016 1.19965 1.21257 1.16110 1.23051 1.02743 1.01659 0.92692 1.23019 1.02555 0.91517 1.03780 0.92747 0.93003 0.92773 0.91853 0.91433 0.91427 0.91838 0.91573 0.91178 0.77084 0.86889 0.87033 0.86850 0.84441 0.90847 0.88579 0.88660 0.88667 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.13 5.53 -26.73 -0.15 -1.27 16 3 C -0.08 -0.67 5.16 -26.73 -0.14 -0.81 16 4 C -0.14 -1.36 1.75 -154.51 -0.27 -1.63 16 5 C 0.16 2.12 5.61 -4.04 -0.02 2.10 16 6 N -0.74 -11.01 5.35 -61.35 -0.33 -11.34 16 7 C 0.56 11.44 7.76 -12.47 -0.10 11.34 16 8 O -0.52 -13.10 15.16 -16.57 -0.25 -13.35 16 9 C -0.23 -4.62 5.89 -104.81 -0.62 -5.24 16 10 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 11 C -0.22 -3.44 10.03 -39.61 -0.40 -3.84 16 12 C -0.05 -0.88 10.03 -39.53 -0.40 -1.28 16 13 C -0.23 -4.83 9.16 -39.44 -0.36 -5.19 16 14 C 0.20 4.79 6.66 -38.60 -0.26 4.54 16 15 O -0.17 -4.61 6.67 -21.09 -0.14 -4.75 16 16 C -0.40 -11.45 9.95 30.90 0.31 -11.14 16 17 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 18 C 0.07 2.09 5.49 -17.51 -0.10 1.99 16 19 N -0.87 -25.47 13.96 55.48 0.77 -24.70 16 20 Si 0.90 23.44 28.62 -169.99 -4.86 18.58 16 21 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.24 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.16 -1.42 9.87 -26.73 -0.26 -1.69 16 25 C -0.17 -1.49 9.52 -26.73 -0.25 -1.75 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.71 6.60 -51.93 -0.34 0.36 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 34 H 0.07 1.00 6.13 -51.93 -0.32 0.68 16 35 H 0.39 4.77 6.25 -40.82 -0.26 4.51 16 36 H 0.11 1.38 6.40 -52.49 -0.34 1.04 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.14 3.03 5.64 -52.49 -0.30 2.74 16 40 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -32.58 362.95 -8.80 -41.38 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.44 Total: 4.41 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.02 Total: -15.71 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.45 Total: -36.03 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.39 Total: -18.10 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.86 Total: 18.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.58 -8.80 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160683740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.439 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds