Wall clock time and date at job start Tue Mar 31 2020 09:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 C 1.52999 * 109.46869 * 185.27645 * 3 2 1 5 5 C 1.53001 * 115.54983 * 304.27217 * 4 3 2 6 6 N 1.46503 * 109.47129 * 269.58897 * 5 4 3 7 7 C 1.34767 * 120.00334 * 185.01448 * 6 5 4 8 8 O 1.21595 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.47534 * 120.00515 * 179.97438 * 7 6 5 10 10 C 1.39666 * 120.19301 * 0.02562 * 9 7 6 11 11 C 1.37828 * 119.91900 * 179.97438 * 10 9 7 12 12 C 1.38578 * 120.32431 * 359.97438 * 11 10 9 13 13 C 1.38025 * 120.40068 * 0.02562 * 12 11 10 14 14 C 1.38829 * 120.07007 * 359.97438 * 13 12 11 15 15 O 1.35525 * 120.16355 * 180.02562 * 14 13 12 16 16 C 1.34821 * 116.99324 * 354.18801 * 15 14 13 17 17 H 1.07991 * 120.00256 * 5.07468 * 16 15 14 18 18 C 1.38696 * 119.99698 * 185.06897 * 16 15 14 19 19 N 1.31524 * 120.00161 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00074 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47307 * 89.99959 * 20 18 16 22 22 H 1.48500 * 109.47067 * 210.00018 * 20 18 16 23 23 H 1.48501 * 109.46968 * 329.99658 * 20 18 16 24 24 C 1.52999 * 117.51950 * 89.97549 * 4 3 2 25 25 C 1.53000 * 60.00201 * 107.48068 * 24 4 3 26 26 H 1.09002 * 109.47316 * 300.00184 * 1 2 3 27 27 H 1.09004 * 109.47246 * 60.00043 * 1 2 3 28 28 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47190 * 240.00229 * 2 1 3 30 30 H 1.09004 * 109.47246 * 119.99957 * 2 1 3 31 31 H 1.09001 * 109.46854 * 65.27926 * 3 2 1 32 32 H 1.08999 * 109.46868 * 305.27605 * 3 2 1 33 33 H 1.09001 * 109.47342 * 149.59213 * 5 4 3 34 34 H 1.08992 * 109.47542 * 29.58933 * 5 4 3 35 35 H 0.97002 * 119.99941 * 5.01419 * 6 5 4 36 36 H 1.08002 * 120.04202 * 359.97438 * 10 9 7 37 37 H 1.07999 * 119.84091 * 179.97438 * 11 10 9 38 38 H 1.08001 * 119.80079 * 180.28146 * 12 11 10 39 39 H 1.07996 * 119.96641 * 180.02562 * 13 12 11 40 40 H 0.97000 * 119.99868 * 180.02562 * 19 18 16 41 41 H 1.09005 * 117.49802 * 214.97138 * 24 4 3 42 42 H 1.08995 * 117.49824 * 359.97438 * 24 4 3 43 43 H 1.08997 * 117.49370 * 252.51559 * 25 24 4 44 44 H 1.08995 * 117.51594 * 107.48531 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5642 1.4446 -0.1327 5 6 4.3194 0.6335 0.9222 6 7 4.6381 1.4942 2.0641 7 6 5.3925 1.0203 3.0753 8 8 5.8084 -0.1217 3.0402 9 6 5.7139 1.8872 4.2251 10 6 5.2379 3.1995 4.2700 11 6 5.5411 4.0043 5.3471 12 6 6.3164 3.5178 6.3876 13 6 6.7937 2.2231 6.3569 14 6 6.4983 1.3981 5.2801 15 8 6.9655 0.1264 5.2483 16 6 7.8105 -0.2399 6.2329 17 1 8.0217 0.4407 7.0442 18 6 8.4085 -1.4910 6.2037 19 7 9.2324 -1.8487 7.1645 20 14 8.0435 -2.6682 4.7999 21 1 9.0213 -2.4498 3.7039 22 1 8.1499 -4.0671 5.2867 23 1 6.6692 -2.4236 4.2934 24 6 4.1508 1.4865 -1.5451 25 6 4.2267 2.7237 -0.6482 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7558 1.9283 0.9335 32 1 1.6015 1.9829 -0.8390 33 1 5.2424 0.2461 0.4906 34 1 3.6977 -0.1972 1.2557 35 1 4.3060 2.4052 2.0924 36 1 4.6330 3.5832 3.4617 37 1 5.1728 5.0189 5.3803 38 1 6.5450 4.1543 7.2297 39 1 7.3968 1.8511 7.1719 40 1 9.6509 -2.7235 7.1439 41 1 5.0748 0.9363 -1.7229 42 1 3.4508 1.5123 -2.3802 43 1 3.5766 3.5636 -0.8933 44 1 5.2005 2.9876 -0.2357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160683740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:20 Heat of formation + Delta-G solvation = -44.392059 kcal Electronic energy + Delta-G solvation = -24643.852186 eV Core-core repulsion = 21140.545101 eV Total energy + Delta-G solvation = -3503.307085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44833 -40.30043 -39.13468 -38.14504 -35.18063 -34.63620 -34.51335 -32.20909 -30.79875 -28.79615 -27.61112 -27.04708 -24.55834 -23.52167 -22.91460 -22.46922 -21.52016 -20.31235 -19.80633 -19.18220 -17.98203 -17.14619 -16.76871 -16.50796 -16.19166 -15.96917 -15.82344 -15.59981 -15.45640 -15.25101 -14.94293 -14.40176 -14.23607 -14.11736 -14.03597 -13.67652 -13.39199 -13.13481 -12.85976 -12.85051 -12.59421 -12.40875 -12.36635 -12.18298 -12.04030 -11.86431 -11.57253 -11.53447 -11.06700 -10.98184 -10.90459 -10.52319 -10.12772 -9.81285 -9.15014 -8.59234 -6.27765 0.05175 0.64600 1.22507 1.27882 1.56355 2.02597 2.14893 2.28259 2.74893 2.92314 3.02162 3.16432 3.62362 3.72930 3.86320 3.93266 4.01832 4.06851 4.25868 4.26361 4.38645 4.47902 4.52316 4.56321 4.64609 4.73344 4.80963 4.82256 4.92680 4.98186 5.03918 5.06775 5.08791 5.12859 5.28460 5.29177 5.34393 5.40653 5.46939 5.48345 5.51125 5.61660 5.69172 5.83174 6.15434 6.65546 6.78271 7.39755 7.58481 8.51371 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004288 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.231221 B = 6528.672447 C = 7767.539250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.072 4.072 4 C -0.144 4.144 5 C 0.156 3.844 6 N -0.709 5.709 7 C 0.552 3.448 8 O -0.577 6.577 9 C -0.234 4.234 10 C -0.030 4.030 11 C -0.188 4.188 12 C -0.042 4.042 13 C -0.251 4.251 14 C 0.161 3.839 15 O -0.211 6.211 16 C -0.403 4.403 17 H 0.093 0.907 18 C 0.027 3.973 19 N -0.911 5.911 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.264 1.264 23 H -0.268 1.268 24 C -0.161 4.161 25 C -0.160 4.160 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.412 0.588 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.286 0.714 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.492 14.074 -16.138 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.109 4.109 4 C -0.145 4.145 5 C 0.032 3.968 6 N -0.363 5.363 7 C 0.342 3.658 8 O -0.457 6.457 9 C -0.238 4.238 10 C -0.048 4.048 11 C -0.206 4.206 12 C -0.060 4.060 13 C -0.270 4.270 14 C 0.108 3.892 15 O -0.115 6.115 16 C -0.479 4.479 17 H 0.110 0.890 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.189 1.189 23 H -0.193 1.193 24 C -0.198 4.198 25 C -0.197 4.197 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.250 0.750 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.169 0.831 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.109 12.878 -16.245 26.253 hybrid contribution 0.565 -0.836 0.243 1.038 sum -15.544 12.042 -16.002 25.351 Atomic orbital electron populations 1.21750 0.94924 1.01760 1.02233 1.21545 0.96441 0.97141 1.01431 1.21108 0.89977 0.96833 1.02972 1.21599 0.95603 1.02029 0.95250 1.20810 0.97934 0.92714 0.85296 1.45652 1.53374 1.17392 1.19920 1.18440 0.78047 0.86401 0.82938 1.90839 1.54232 1.20790 1.79865 1.19305 1.10919 0.97524 0.96084 1.21341 0.95324 0.89433 0.98713 1.21242 1.03086 1.01851 0.94445 1.21454 0.92929 0.92831 0.98820 1.21333 1.08751 0.96985 0.99935 1.19782 0.91754 0.84053 0.93660 1.83777 1.55594 1.24762 1.47340 1.20911 1.22053 1.02589 1.02389 0.88998 1.25016 0.94640 0.98144 0.99499 1.69682 1.29221 1.22771 1.33417 0.85434 0.79966 0.77841 0.78907 1.20243 1.18881 1.19259 1.23133 1.02636 1.01487 0.92564 1.23100 1.02252 0.91690 1.02662 0.92769 0.91563 0.93015 0.91856 0.93844 0.91371 0.89630 0.93637 0.92467 0.74955 0.81811 0.81454 0.83070 0.86727 0.90434 0.89649 0.86615 0.86168 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.32 16 2 C -0.13 -2.10 5.53 30.60 0.17 -1.93 16 3 C -0.07 -1.00 5.16 30.60 0.16 -0.84 16 4 C -0.14 -2.44 1.75 -52.18 -0.09 -2.53 16 5 C 0.16 4.14 5.61 86.38 0.48 4.62 16 6 N -0.71 -20.15 5.35 -466.28 -2.50 -22.64 16 7 C 0.55 22.77 7.76 86.70 0.67 23.44 16 8 O -0.58 -30.66 15.16 16.88 0.26 -30.41 16 9 C -0.23 -9.36 5.89 -19.99 -0.12 -9.48 16 10 C -0.03 -0.81 9.53 22.52 0.21 -0.59 16 11 C -0.19 -4.64 10.03 22.25 0.22 -4.41 16 12 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 13 C -0.25 -10.80 9.16 22.36 0.20 -10.59 16 14 C 0.16 7.91 6.66 22.91 0.15 8.06 16 15 O -0.21 -12.52 6.67 0.72 0.00 -12.51 16 16 C -0.40 -25.04 9.95 67.93 0.68 -24.37 16 17 H 0.09 5.75 5.44 -2.92 -0.02 5.73 16 18 C 0.03 1.68 5.49 84.85 0.47 2.15 16 19 N -0.91 -56.39 13.96 21.62 0.30 -56.09 16 20 Si 0.95 51.83 28.62 68.60 1.96 53.79 16 21 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 22 H -0.26 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.27 -15.71 7.11 99.48 0.71 -15.01 16 24 C -0.16 -2.35 9.87 30.59 0.30 -2.05 16 25 C -0.16 -2.17 9.52 30.60 0.29 -1.88 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.91 6.60 -2.39 -0.02 0.90 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.05 1.40 7.87 -2.39 -0.02 1.39 16 34 H 0.06 1.69 6.13 -2.39 -0.01 1.68 16 35 H 0.41 8.39 6.25 -92.71 -0.58 7.81 16 36 H 0.16 2.79 6.40 -2.91 -0.02 2.77 16 37 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 40 H 0.29 16.29 8.31 -92.71 -0.77 15.52 16 41 H 0.08 1.45 8.03 -2.38 -0.02 1.43 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -80.12 362.95 5.20 -74.92 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.43 Total: 15.73 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.74 Total: -22.79 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.19 Total: -78.73 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: 0.26 Total: -42.92 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 1.96 Total: 53.79 kcal Total: -80.12 5.20 -74.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160683740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.523 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds