Wall clock time and date at job start Tue Mar 31 2020 10:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00408 * 2 1 4 4 C 1.52996 * 109.47515 * 124.99881 * 3 2 1 5 5 C 1.53000 * 109.47400 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47103 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99873 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99874 * 180.02562 * 6 5 4 9 9 C 1.39917 * 120.00075 * 185.27630 * 8 6 5 10 10 C 1.38933 * 120.04163 * 213.30012 * 9 8 6 11 11 C 1.38126 * 120.03704 * 180.02562 * 10 9 8 12 12 C 1.38215 * 120.12639 * 359.68018 * 11 10 9 13 13 C 1.38762 * 120.08446 * 0.59353 * 12 11 10 14 14 O 1.35893 * 120.02114 * 179.69880 * 13 12 11 15 15 C 1.42897 * 117.00074 * 359.73109 * 14 13 12 16 16 C 1.53004 * 109.47092 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46777 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00434 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00189 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46574 * 60.00379 * 21 19 17 23 23 H 1.48493 * 109.47134 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47056 * 300.00353 * 21 19 17 25 25 C 1.38631 * 119.95633 * 359.42885 * 13 12 11 26 26 H 1.07999 * 119.99927 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99825 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99710 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46638 * 4.99709 * 3 2 1 30 30 H 1.09003 * 109.47062 * 245.00409 * 3 2 1 31 31 H 1.09003 * 109.46589 * 60.00430 * 4 3 2 32 32 H 1.08997 * 109.47224 * 300.00720 * 4 3 2 33 33 H 1.08997 * 109.46799 * 60.00189 * 5 4 3 34 34 H 1.09003 * 109.47059 * 300.00456 * 5 4 3 35 35 H 0.96997 * 120.00199 * 5.26862 * 8 6 5 36 36 H 1.08000 * 119.98133 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.93323 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.95600 * 180.30031 * 12 11 10 39 39 H 1.09001 * 109.46881 * 299.99974 * 15 14 13 40 40 H 1.08998 * 109.47261 * 59.99940 * 15 14 13 41 41 H 1.09000 * 109.46979 * 299.99300 * 16 15 14 42 42 H 1.08998 * 109.47098 * 59.99863 * 16 15 14 43 43 H 0.96994 * 120.00572 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.05730 * 180.25295 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7571 2.6855 2.3454 7 8 4.8211 1.7384 3.1004 8 7 5.5413 3.7628 2.5477 9 6 6.5072 3.7449 3.5598 10 6 6.8198 4.9131 4.2437 11 6 7.7738 4.8955 5.2425 12 6 8.4148 3.7152 5.5687 13 6 8.1107 2.5465 4.8852 14 8 8.7461 1.3881 5.2028 15 6 9.7200 1.4476 6.2468 16 6 10.3233 0.0579 6.4613 17 6 11.3499 0.1206 7.5628 18 1 11.5522 1.0579 8.0598 19 6 12.0309 -1.0186 7.9360 20 7 11.7849 -2.1599 7.3305 21 14 13.3040 -0.9409 9.3008 22 1 12.6564 -0.4826 10.5562 23 1 13.8885 -2.2899 9.5100 24 1 14.3785 0.0114 8.9218 25 6 7.1541 2.5604 3.8818 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5065 1.0919 32 1 2.4774 1.2355 2.1129 33 1 3.0945 3.4845 1.2717 34 1 4.3574 2.7562 0.2505 35 1 5.4363 4.5505 1.9915 36 1 6.3167 5.8356 3.9942 37 1 8.0158 5.8047 5.7727 38 1 9.1567 3.7035 6.3534 39 1 10.5082 2.1473 5.9689 40 1 9.2447 1.7831 7.1685 41 1 9.5348 -0.6414 6.7395 42 1 10.7985 -0.2780 5.5398 43 1 12.2642 -2.9613 7.5928 44 1 6.9133 1.6509 3.3515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175365890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:24 Heat of formation + Delta-G solvation = -51.405610 kcal Electronic energy + Delta-G solvation = -23010.181677 eV Core-core repulsion = 19506.570461 eV Total energy + Delta-G solvation = -3503.611216 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67463 -39.29829 -37.29627 -36.25963 -34.57424 -33.32735 -32.76675 -30.85174 -29.74239 -29.07538 -27.39684 -25.02538 -23.50228 -22.35861 -21.90188 -20.75959 -20.26483 -19.99914 -18.33150 -17.26882 -16.40191 -16.35271 -15.99390 -15.62391 -15.44885 -15.26535 -15.00606 -14.52176 -14.45552 -13.93655 -13.79588 -13.50453 -13.02306 -12.74888 -12.62617 -12.29620 -12.12027 -11.93067 -11.76249 -11.65142 -11.39987 -11.24756 -11.04726 -10.89362 -10.83498 -10.54450 -10.31558 -9.89179 -9.79981 -9.65615 -9.62244 -9.28113 -8.42504 -8.23101 -7.80482 -6.07180 -4.12019 1.36445 1.65147 1.95294 2.48463 2.83544 3.30597 3.34793 3.36663 3.85932 3.98768 4.37739 4.38348 4.45964 4.61516 4.83748 4.88139 5.00786 5.13392 5.19310 5.19695 5.24454 5.28821 5.38496 5.41876 5.47817 5.59549 5.69556 5.80131 5.91023 6.02686 6.05877 6.07390 6.29035 6.31251 6.37804 6.43734 6.54513 6.61473 6.77084 6.99869 7.23146 7.54183 7.68118 7.84217 7.96847 8.10192 8.26883 8.93375 9.51922 11.04354 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002335 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.865455 B =11986.358885 C =13561.900633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.103 4.103 5 C -0.138 4.138 6 C 0.506 3.494 7 O -0.508 6.508 8 N -0.675 5.675 9 C 0.177 3.823 10 C -0.197 4.197 11 C -0.061 4.061 12 C -0.226 4.226 13 C 0.164 3.836 14 O -0.312 6.312 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.164 4.164 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.410 0.590 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 14.725 -15.546 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.141 4.141 5 C -0.178 4.178 6 C 0.294 3.706 7 O -0.382 6.382 8 N -0.321 5.321 9 C 0.084 3.916 10 C -0.218 4.218 11 C -0.080 4.080 12 C -0.246 4.246 13 C 0.116 3.884 14 O -0.225 6.225 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.185 4.185 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.703 13.593 -15.127 27.629 hybrid contribution 0.759 0.569 0.645 1.147 sum -17.943 14.161 -14.482 27.060 Atomic orbital electron populations 1.23850 0.95982 1.01798 1.01835 1.22975 0.96049 0.98661 0.99249 1.20788 0.98130 0.95557 0.98701 1.21322 0.97887 0.96090 0.98818 1.21705 0.98063 1.01078 0.96936 1.20967 0.80904 0.82173 0.86600 1.90804 1.66802 1.34764 1.45804 1.43544 1.35223 1.18577 1.34712 1.17300 0.89820 0.94058 0.90469 1.20615 1.03800 0.97088 1.00298 1.20664 0.94467 0.97316 0.95558 1.21385 1.05758 0.92858 1.04583 1.18959 0.90887 0.86002 0.92506 1.86190 1.52547 1.29103 1.54656 1.23353 0.87825 1.03203 0.86535 1.19128 0.95691 0.88679 0.97731 1.20934 1.21531 0.95269 1.18752 0.92397 1.24999 0.97169 0.95287 0.96785 1.69969 1.41791 0.99544 1.41424 0.86539 0.81438 0.77209 0.82121 1.20103 1.21131 1.20107 1.20257 0.98121 0.98862 1.01254 0.88552 0.88700 0.87218 0.91492 0.90851 0.90658 0.90847 0.88690 0.88452 0.75477 0.86146 0.85715 0.85041 0.93046 0.93046 0.95339 0.95386 0.92654 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 14.32 29.01 0.42 -0.90 16 2 C -0.15 -1.08 9.52 -36.03 -0.34 -1.43 16 3 C -0.09 -0.58 5.66 -27.89 -0.16 -0.74 16 4 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 5 C -0.14 -0.90 5.70 -27.88 -0.16 -1.06 16 6 C 0.51 5.64 7.57 -10.99 -0.08 5.56 16 7 O -0.51 -8.24 13.67 5.55 0.08 -8.17 16 8 N -0.67 -6.71 5.34 -9.88 -0.05 -6.77 16 9 C 0.18 2.42 6.28 -83.72 -0.53 1.90 16 10 C -0.20 -2.37 9.96 -39.37 -0.39 -2.76 16 11 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 12 C -0.23 -3.64 9.04 -39.40 -0.36 -4.00 16 13 C 0.16 3.09 6.68 -39.24 -0.26 2.83 16 14 O -0.31 -6.87 10.13 -19.40 -0.20 -7.07 16 15 C 0.06 1.44 4.68 37.16 0.17 1.62 16 16 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 17 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.16 -2.85 8.59 -39.25 -0.34 -3.19 16 26 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 27 H 0.09 0.55 7.84 -52.49 -0.41 0.14 16 28 H 0.11 0.78 8.06 -52.48 -0.42 0.36 16 29 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 2.34 8.82 -40.82 -0.36 1.98 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.13 2.05 6.29 -52.48 -0.33 1.72 16 39 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 40 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.14 2.61 6.41 -52.49 -0.34 2.27 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -34.17 373.38 -8.76 -42.93 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.83 Total: 0.51 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.10 Total: -17.41 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.68 Total: -32.95 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.12 Total: -15.24 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.17 -8.76 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175365890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.471 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds