Wall clock time and date at job start Tue Mar 31 2020 10:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00408 * 2 1 4 4 C 1.52996 * 109.47515 * 124.99881 * 3 2 1 5 5 C 1.53000 * 109.47400 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47103 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99873 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99874 * 180.02562 * 6 5 4 9 9 C 1.39917 * 120.00075 * 185.27630 * 8 6 5 10 10 C 1.38933 * 120.04163 * 213.30012 * 9 8 6 11 11 C 1.38126 * 120.03704 * 180.02562 * 10 9 8 12 12 C 1.38215 * 120.12639 * 359.68018 * 11 10 9 13 13 C 1.38762 * 120.08446 * 0.59353 * 12 11 10 14 14 O 1.35893 * 120.02114 * 179.69880 * 13 12 11 15 15 C 1.42897 * 117.00074 * 359.73109 * 14 13 12 16 16 C 1.53004 * 109.47092 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46777 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00434 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00189 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46574 * 60.00379 * 21 19 17 23 23 H 1.48493 * 109.47134 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47056 * 300.00353 * 21 19 17 25 25 C 1.38631 * 119.95633 * 359.42885 * 13 12 11 26 26 H 1.07999 * 119.99927 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99825 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99710 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46638 * 4.99709 * 3 2 1 30 30 H 1.09003 * 109.47062 * 245.00409 * 3 2 1 31 31 H 1.09003 * 109.46589 * 60.00430 * 4 3 2 32 32 H 1.08997 * 109.47224 * 300.00720 * 4 3 2 33 33 H 1.08997 * 109.46799 * 60.00189 * 5 4 3 34 34 H 1.09003 * 109.47059 * 300.00456 * 5 4 3 35 35 H 0.96997 * 120.00199 * 5.26862 * 8 6 5 36 36 H 1.08000 * 119.98133 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.93323 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.95600 * 180.30031 * 12 11 10 39 39 H 1.09001 * 109.46881 * 299.99974 * 15 14 13 40 40 H 1.08998 * 109.47261 * 59.99940 * 15 14 13 41 41 H 1.09000 * 109.46979 * 299.99300 * 16 15 14 42 42 H 1.08998 * 109.47098 * 59.99863 * 16 15 14 43 43 H 0.96994 * 120.00572 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.05730 * 180.25295 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7571 2.6855 2.3454 7 8 4.8211 1.7384 3.1004 8 7 5.5413 3.7628 2.5477 9 6 6.5072 3.7449 3.5598 10 6 6.8198 4.9131 4.2437 11 6 7.7738 4.8955 5.2425 12 6 8.4148 3.7152 5.5687 13 6 8.1107 2.5465 4.8852 14 8 8.7461 1.3881 5.2028 15 6 9.7200 1.4476 6.2468 16 6 10.3233 0.0579 6.4613 17 6 11.3499 0.1206 7.5628 18 1 11.5522 1.0579 8.0598 19 6 12.0309 -1.0186 7.9360 20 7 11.7849 -2.1599 7.3305 21 14 13.3040 -0.9409 9.3008 22 1 12.6564 -0.4826 10.5562 23 1 13.8885 -2.2899 9.5100 24 1 14.3785 0.0114 8.9218 25 6 7.1541 2.5604 3.8818 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5065 1.0919 32 1 2.4774 1.2355 2.1129 33 1 3.0945 3.4845 1.2717 34 1 4.3574 2.7562 0.2505 35 1 5.4363 4.5505 1.9915 36 1 6.3167 5.8356 3.9942 37 1 8.0158 5.8047 5.7727 38 1 9.1567 3.7035 6.3534 39 1 10.5082 2.1473 5.9689 40 1 9.2447 1.7831 7.1685 41 1 9.5348 -0.6414 6.7395 42 1 10.7985 -0.2780 5.5398 43 1 12.2642 -2.9613 7.5928 44 1 6.9133 1.6509 3.3515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175365890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:23 Heat of formation + Delta-G solvation = -72.693335 kcal Electronic energy + Delta-G solvation = -23011.104782 eV Core-core repulsion = 19506.570461 eV Total energy + Delta-G solvation = -3504.534321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71213 -40.59176 -38.55307 -36.88475 -35.74476 -35.35099 -33.39529 -32.61308 -31.06830 -30.34611 -28.07433 -27.00017 -24.57076 -23.57526 -23.21254 -22.02972 -21.21498 -20.65123 -19.66409 -18.44557 -18.10602 -17.22925 -17.07613 -16.93984 -16.76571 -16.74262 -16.37521 -15.84246 -15.34965 -14.81989 -14.53253 -14.43176 -14.41017 -14.31461 -14.26008 -13.40229 -13.28890 -13.21904 -12.74436 -12.66464 -12.64702 -12.58212 -12.47908 -12.22386 -11.79344 -11.77477 -11.63856 -11.61046 -11.45282 -11.23898 -10.87959 -10.63371 -10.19134 -9.42912 -9.01905 -8.27742 -6.42471 0.22801 0.47363 1.39618 1.41290 1.44626 1.52575 1.58820 1.96450 2.30172 2.52968 2.82312 3.06130 3.68391 3.83670 3.90085 4.06519 4.15389 4.19571 4.24349 4.24871 4.32354 4.35473 4.44213 4.56015 4.62896 4.67526 4.70341 4.72957 4.83388 4.93454 5.07435 5.22010 5.25334 5.27005 5.32641 5.39601 5.41888 5.42713 5.50674 5.66582 5.78839 5.90833 5.91357 6.04969 6.43509 6.54484 6.72163 7.16546 7.27723 8.85483 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002335 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.865455 B =11986.358885 C =13561.900633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.086 4.086 4 C -0.103 4.103 5 C -0.125 4.125 6 C 0.500 3.500 7 O -0.569 6.569 8 N -0.658 5.658 9 C 0.179 3.821 10 C -0.175 4.175 11 C -0.053 4.053 12 C -0.237 4.237 13 C 0.122 3.878 14 O -0.347 6.347 15 C 0.085 3.915 16 C 0.027 3.973 17 C -0.546 4.546 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.261 1.261 25 C -0.189 4.189 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.434 0.566 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.066 0.934 40 H 0.061 0.939 41 H -0.007 1.007 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 19.106 -15.846 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.189 4.189 3 C -0.123 4.123 4 C -0.141 4.141 5 C -0.164 4.164 6 C 0.290 3.710 7 O -0.446 6.446 8 N -0.306 5.306 9 C 0.084 3.916 10 C -0.195 4.195 11 C -0.071 4.071 12 C -0.256 4.256 13 C 0.076 3.924 14 O -0.261 6.261 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.584 4.584 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.210 4.210 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.275 0.725 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.076 0.924 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.443 18.042 -15.475 30.708 hybrid contribution 0.833 -0.748 0.629 1.284 sum -18.610 17.294 -14.846 29.425 Atomic orbital electron populations 1.24018 0.95877 1.02575 1.00931 1.23121 0.96537 0.99106 1.00134 1.20744 0.97908 0.95441 0.98184 1.21264 0.97720 0.96342 0.98762 1.21760 0.97669 1.01237 0.95728 1.21926 0.80972 0.81209 0.86922 1.90800 1.68656 1.36989 1.48199 1.43485 1.33680 1.19424 1.33986 1.17470 0.89690 0.93306 0.91179 1.21149 1.02331 0.97840 0.98228 1.21159 0.93288 0.97309 0.95368 1.21526 1.06464 0.93083 1.04521 1.19282 0.92461 0.85954 0.94663 1.86092 1.53293 1.31792 1.54921 1.22898 0.88503 1.00061 0.87476 1.18980 0.94777 0.90981 0.96280 1.21367 1.21779 0.96181 1.19072 0.90788 1.26127 0.99599 0.94649 0.99643 1.70132 1.43217 1.00502 1.43348 0.85273 0.78343 0.77554 0.78492 1.18764 1.20796 1.18567 1.20246 0.99347 0.99629 1.01798 0.88374 0.87415 0.88253 0.89664 0.89414 0.93366 0.93114 0.84910 0.85449 0.72510 0.81250 0.81646 0.85007 0.91632 0.92111 0.98816 0.98475 0.92424 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.47 14.32 67.78 0.97 -1.50 16 2 C -0.17 -2.41 9.52 25.64 0.24 -2.17 16 3 C -0.09 -0.91 5.66 29.84 0.17 -0.74 16 4 C -0.10 -1.62 4.49 30.59 0.14 -1.48 16 5 C -0.12 -1.32 5.70 29.85 0.17 -1.15 16 6 C 0.50 10.78 7.57 87.66 0.66 11.45 16 7 O -0.57 -19.59 13.67 -3.05 -0.04 -19.64 16 8 N -0.66 -11.51 5.34 -303.55 -1.62 -13.13 16 9 C 0.18 4.61 6.28 38.14 0.24 4.85 16 10 C -0.18 -3.47 9.96 22.41 0.22 -3.24 16 11 C -0.05 -1.18 10.03 22.24 0.22 -0.96 16 12 C -0.24 -7.46 9.04 22.39 0.20 -7.26 16 13 C 0.12 4.83 6.68 22.49 0.15 4.98 16 14 O -0.35 -16.50 10.13 -92.35 -0.94 -17.44 16 15 C 0.08 3.97 4.68 71.98 0.34 4.31 16 16 C 0.03 1.56 5.34 29.85 0.16 1.72 16 17 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 18 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 20 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 21 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 25 C -0.19 -6.89 8.59 22.49 0.19 -6.70 16 26 H 0.10 1.14 8.06 -2.91 -0.02 1.12 16 27 H 0.11 1.05 7.84 -2.91 -0.02 1.03 16 28 H 0.10 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.08 0.62 7.79 -2.38 -0.02 0.60 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.43 3.05 8.82 -92.71 -0.82 2.24 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.13 4.04 6.29 -2.91 -0.02 4.03 16 39 H 0.07 2.82 7.67 -2.39 -0.02 2.80 16 40 H 0.06 2.67 7.65 -2.39 -0.02 2.65 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.11 4.53 6.41 -2.91 -0.02 4.52 16 Total: -1.00 -82.29 373.38 4.66 -77.64 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.17 Total: 13.60 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.78 Total: -29.15 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.34 Total: -71.48 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.98 Total: -37.07 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -82.29 4.66 -77.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175365890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.945 kcal (2) G-P(sol) polarization free energy of solvation -82.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds