Wall clock time and date at job start Tue Mar 31 2020 08:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47468 * 2 1 4 4 C 1.50704 * 112.85105 * 303.80451 * 3 2 1 5 5 O 1.21280 * 120.00026 * 113.65164 * 4 3 2 6 6 N 1.34773 * 119.99829 * 293.65661 * 4 3 2 7 7 C 1.46497 * 120.00396 * 174.97628 * 6 4 3 8 8 C 1.50700 * 109.47628 * 179.97438 * 7 6 4 9 9 C 1.38307 * 119.92872 * 89.99516 * 8 7 6 10 10 C 1.38098 * 120.06554 * 180.29761 * 9 8 7 11 11 C 1.38884 * 119.93226 * 359.47921 * 10 9 8 12 12 O 1.35745 * 120.07310 * 180.25020 * 11 10 9 13 13 C 1.34829 * 117.00232 * 186.02169 * 12 11 10 14 14 H 1.07998 * 119.99743 * 5.33260 * 13 12 11 15 15 C 1.38658 * 119.99908 * 185.32537 * 13 12 11 16 16 N 1.31553 * 119.99696 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46868 * 90.00016 * 17 15 13 19 19 H 1.48504 * 109.46864 * 209.99953 * 17 15 13 20 20 H 1.48495 * 109.47327 * 329.99614 * 17 15 13 21 21 C 1.38883 * 119.85719 * 0.52190 * 11 10 9 22 22 C 1.38102 * 119.93346 * 359.72730 * 21 11 10 23 23 C 1.53787 * 113.69085 * 75.06896 * 3 2 1 24 24 C 1.53776 * 87.07931 * 89.12994 * 23 3 2 25 25 C 1.53781 * 113.61985 * 172.60610 * 3 2 1 26 26 H 1.09005 * 109.47158 * 295.19599 * 1 2 3 27 27 H 1.09004 * 109.47424 * 55.19366 * 1 2 3 28 28 H 1.08998 * 109.47489 * 175.20325 * 1 2 3 29 29 H 1.08997 * 109.47480 * 239.99921 * 2 1 3 30 30 H 1.08998 * 109.47584 * 119.99998 * 2 1 3 31 31 H 0.97009 * 119.99939 * 354.97769 * 6 4 3 32 32 H 1.08997 * 109.47304 * 59.99591 * 7 6 4 33 33 H 1.09003 * 109.47192 * 300.00106 * 7 6 4 34 34 H 1.07996 * 119.96638 * 0.02802 * 9 8 7 35 35 H 1.07999 * 120.03487 * 179.72737 * 10 9 8 36 36 H 0.97003 * 120.00083 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.02948 * 179.70754 * 21 11 10 38 38 H 1.07998 * 119.96187 * 180.02562 * 22 21 11 39 39 H 1.09003 * 113.61147 * 203.68064 * 23 3 2 40 40 H 1.08999 * 113.61041 * 334.58233 * 23 3 2 41 41 H 1.08998 * 113.61365 * 270.88433 * 24 23 3 42 42 H 1.08999 * 113.61382 * 139.98229 * 24 23 3 43 43 H 1.09004 * 113.61032 * 25.34360 * 25 3 2 44 44 H 1.09000 * 113.61544 * 156.25228 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5066 2.2518 -1.1540 5 8 0.7536 3.1797 -0.9471 6 7 1.8664 1.9443 -2.4159 7 6 1.2639 2.6586 -3.5441 8 6 1.8331 2.1298 -4.8354 9 6 1.2191 1.0696 -5.4772 10 6 1.7418 0.5788 -6.6574 11 6 2.8791 1.1578 -7.2054 12 8 3.3924 0.6808 -8.3680 13 6 4.5649 1.2039 -8.7796 14 1 5.0948 1.9033 -8.1501 15 6 5.0904 0.8437 -10.0112 16 7 6.2347 1.3537 -10.4126 17 14 4.1735 -0.3657 -11.1003 18 1 3.2458 0.3759 -11.9917 19 1 5.1473 -1.1276 -11.9229 20 1 3.3988 -1.3067 -10.2522 21 6 3.4933 2.2221 -6.5583 22 6 2.9687 2.7051 -5.3757 23 6 1.9039 2.1460 1.3607 24 6 3.3003 1.5961 1.6961 25 6 3.5627 1.5575 0.1813 26 1 -0.3634 0.4375 0.9299 27 1 -0.3634 0.5866 -0.8438 28 1 -0.3634 -1.0240 -0.0859 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 2.5244 1.2500 -2.5771 32 1 1.4837 3.7229 -3.4595 33 1 0.1843 2.5087 -3.5342 34 1 0.3324 0.6225 -5.0527 35 1 1.2644 -0.2519 -7.1559 36 1 6.6022 1.1021 -11.2743 37 1 4.3806 2.6714 -6.9796 38 1 3.4457 3.5331 -4.8724 39 1 1.8684 3.2330 1.2886 40 1 1.1113 1.7361 1.9868 41 1 3.2813 0.6106 2.1612 42 1 3.9320 2.3055 2.2307 43 1 4.1093 0.6725 -0.1446 44 1 3.9807 2.4837 -0.2132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175967616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:33 Heat of formation + Delta-G solvation = -34.543355 kcal Electronic energy + Delta-G solvation = -24126.959775 eV Core-core repulsion = 20624.079762 eV Total energy + Delta-G solvation = -3502.880013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.82964 -39.35095 -38.00486 -36.92776 -34.45076 -32.69925 -32.47293 -30.42817 -30.16828 -27.08982 -25.85015 -25.70037 -24.39136 -23.02367 -22.19558 -21.05941 -20.61973 -18.77628 -18.00393 -17.45862 -17.09601 -16.03510 -15.79470 -15.32253 -15.02494 -14.70486 -14.29536 -14.17021 -14.07738 -13.83382 -13.60897 -13.39370 -12.87727 -12.81311 -12.69509 -12.60521 -12.28090 -12.03365 -11.93326 -11.75644 -11.49244 -11.49153 -11.19810 -10.97725 -10.85059 -10.78558 -10.60006 -10.46218 -10.23330 -9.60224 -9.51964 -8.97123 -8.95697 -8.39473 -7.49149 -6.51523 -4.18381 1.94579 2.01065 2.66093 3.15264 3.19687 3.33378 3.37656 4.13998 4.15396 4.23779 4.38754 4.46947 4.53629 4.74241 4.82347 4.99375 5.00679 5.07673 5.14400 5.24685 5.33790 5.42052 5.51812 5.53958 5.54822 5.62657 5.65795 5.70993 5.72357 5.81956 5.87880 5.97107 6.01922 6.04796 6.16569 6.23639 6.43685 6.52087 6.66400 6.89076 7.11497 7.17597 7.48176 7.60650 7.68961 7.92725 8.27427 8.83122 9.43934 10.55726 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.002704 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.119541 B =10351.620481 C =10542.282832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.107 4.107 4 C 0.528 3.472 5 O -0.547 6.547 6 N -0.720 5.720 7 C 0.177 3.823 8 C -0.205 4.205 9 C -0.057 4.057 10 C -0.195 4.195 11 C 0.166 3.834 12 O -0.213 6.213 13 C -0.391 4.391 14 H 0.107 0.893 15 C 0.065 3.935 16 N -0.875 5.875 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.259 1.259 21 C -0.223 4.223 22 C -0.053 4.053 23 C -0.111 4.111 24 C -0.141 4.141 25 C -0.128 4.128 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.401 0.599 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.281 0.719 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 -2.478 20.134 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.132 4.132 3 C -0.110 4.110 4 C 0.314 3.686 5 O -0.425 6.425 6 N -0.371 5.371 7 C 0.054 3.946 8 C -0.206 4.206 9 C -0.075 4.075 10 C -0.214 4.214 11 C 0.113 3.887 12 O -0.117 6.117 13 C -0.467 4.467 14 H 0.124 0.876 15 C -0.139 4.139 16 N -0.512 5.512 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.243 4.243 22 C -0.072 4.072 23 C -0.149 4.149 24 C -0.179 4.179 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.649 -1.973 19.905 21.415 hybrid contribution 0.209 -0.646 -0.818 1.064 sum -7.439 -2.619 19.086 20.652 Atomic orbital electron populations 1.21762 0.95153 1.01735 1.02385 1.21278 0.96466 0.92529 1.02914 1.22222 0.97471 0.96633 0.94669 1.20367 0.80536 0.84020 0.83714 1.90671 1.36672 1.30132 1.84993 1.46312 1.44808 1.40571 1.05433 1.19986 0.96654 0.95690 0.82223 1.19286 1.00403 1.02291 0.98652 1.20527 0.98123 0.94912 0.93982 1.20207 0.98490 1.04158 0.98550 1.19193 0.91805 0.91279 0.86428 1.83588 1.36896 1.57870 1.33339 1.20780 0.94110 1.27677 1.04109 0.87552 1.24491 0.95693 0.97535 0.96218 1.69642 1.17775 1.42268 1.21562 0.86173 0.79503 0.81131 0.80074 1.19812 1.20666 1.18293 1.21288 1.04243 1.00549 0.98179 1.20698 0.94159 0.97728 0.94566 1.22820 0.97189 1.00960 0.93933 1.22835 0.97377 1.01580 0.96067 1.22975 0.93573 1.02999 0.97000 0.92445 0.92571 0.92364 0.91072 0.90748 0.76426 0.91537 0.91651 0.86821 0.86377 0.90892 0.84796 0.87145 0.89234 0.90999 0.89921 0.91114 0.90493 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.64 37.15 0.36 -0.98 16 2 C -0.09 -0.76 5.30 -26.74 -0.14 -0.90 16 3 C -0.11 -1.01 0.80 -154.84 -0.12 -1.14 16 4 C 0.53 6.69 5.45 -10.99 -0.06 6.63 16 5 O -0.55 -8.92 16.18 5.56 0.09 -8.83 16 6 N -0.72 -8.70 5.55 -61.47 -0.34 -9.04 16 7 C 0.18 2.39 5.80 -5.20 -0.03 2.36 16 8 C -0.20 -3.13 5.25 -104.58 -0.55 -3.67 16 9 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 10 C -0.19 -3.60 9.99 -39.39 -0.39 -3.99 16 11 C 0.17 3.62 6.65 -39.10 -0.26 3.36 16 12 O -0.21 -5.39 8.59 0.07 0.00 -5.39 16 13 C -0.39 -10.66 9.90 30.89 0.31 -10.35 16 14 H 0.11 2.96 5.53 -52.49 -0.29 2.67 16 15 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -24.65 13.96 55.48 0.77 -23.87 16 17 Si 0.91 21.03 28.62 -169.99 -4.86 16.17 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.22 -4.54 9.13 -39.39 -0.36 -4.90 16 22 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 23 C -0.11 -1.01 6.79 -25.92 -0.18 -1.19 16 24 C -0.14 -1.02 7.73 -25.92 -0.20 -1.22 16 25 C -0.13 -1.05 7.22 -25.92 -0.19 -1.23 16 26 H 0.06 0.49 7.52 -51.93 -0.39 0.10 16 27 H 0.06 0.60 7.13 -51.93 -0.37 0.23 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.49 7.31 -51.93 -0.38 0.11 16 31 H 0.40 4.37 8.47 -40.82 -0.35 4.03 16 32 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.28 7.29 8.31 -40.82 -0.34 6.96 16 37 H 0.13 2.89 5.71 -52.48 -0.30 2.59 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.09 0.95 7.73 -51.93 -0.40 0.55 16 40 H 0.07 0.60 7.47 -51.93 -0.39 0.22 16 41 H 0.08 0.50 7.60 -51.93 -0.39 0.11 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -29.64 362.49 -8.17 -37.81 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.61 Total: 5.78 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.68 Total: -18.08 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.43 Total: -32.91 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.64 -8.17 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175967616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.268 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds