Wall clock time and date at job start Tue Mar 31 2020 08:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47468 * 2 1 4 4 C 1.50704 * 112.85105 * 303.80451 * 3 2 1 5 5 O 1.21280 * 120.00026 * 113.65164 * 4 3 2 6 6 N 1.34773 * 119.99829 * 293.65661 * 4 3 2 7 7 C 1.46497 * 120.00396 * 174.97628 * 6 4 3 8 8 C 1.50700 * 109.47628 * 179.97438 * 7 6 4 9 9 C 1.38307 * 119.92872 * 89.99516 * 8 7 6 10 10 C 1.38098 * 120.06554 * 180.29761 * 9 8 7 11 11 C 1.38884 * 119.93226 * 359.47921 * 10 9 8 12 12 O 1.35745 * 120.07310 * 180.25020 * 11 10 9 13 13 C 1.34829 * 117.00232 * 186.02169 * 12 11 10 14 14 H 1.07998 * 119.99743 * 5.33260 * 13 12 11 15 15 C 1.38658 * 119.99908 * 185.32537 * 13 12 11 16 16 N 1.31553 * 119.99696 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46868 * 90.00016 * 17 15 13 19 19 H 1.48504 * 109.46864 * 209.99953 * 17 15 13 20 20 H 1.48495 * 109.47327 * 329.99614 * 17 15 13 21 21 C 1.38883 * 119.85719 * 0.52190 * 11 10 9 22 22 C 1.38102 * 119.93346 * 359.72730 * 21 11 10 23 23 C 1.53787 * 113.69085 * 75.06896 * 3 2 1 24 24 C 1.53776 * 87.07931 * 89.12994 * 23 3 2 25 25 C 1.53781 * 113.61985 * 172.60610 * 3 2 1 26 26 H 1.09005 * 109.47158 * 295.19599 * 1 2 3 27 27 H 1.09004 * 109.47424 * 55.19366 * 1 2 3 28 28 H 1.08998 * 109.47489 * 175.20325 * 1 2 3 29 29 H 1.08997 * 109.47480 * 239.99921 * 2 1 3 30 30 H 1.08998 * 109.47584 * 119.99998 * 2 1 3 31 31 H 0.97009 * 119.99939 * 354.97769 * 6 4 3 32 32 H 1.08997 * 109.47304 * 59.99591 * 7 6 4 33 33 H 1.09003 * 109.47192 * 300.00106 * 7 6 4 34 34 H 1.07996 * 119.96638 * 0.02802 * 9 8 7 35 35 H 1.07999 * 120.03487 * 179.72737 * 10 9 8 36 36 H 0.97003 * 120.00083 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.02948 * 179.70754 * 21 11 10 38 38 H 1.07998 * 119.96187 * 180.02562 * 22 21 11 39 39 H 1.09003 * 113.61147 * 203.68064 * 23 3 2 40 40 H 1.08999 * 113.61041 * 334.58233 * 23 3 2 41 41 H 1.08998 * 113.61365 * 270.88433 * 24 23 3 42 42 H 1.08999 * 113.61382 * 139.98229 * 24 23 3 43 43 H 1.09004 * 113.61032 * 25.34360 * 25 3 2 44 44 H 1.09000 * 113.61544 * 156.25228 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5066 2.2518 -1.1540 5 8 0.7536 3.1797 -0.9471 6 7 1.8664 1.9443 -2.4159 7 6 1.2639 2.6586 -3.5441 8 6 1.8331 2.1298 -4.8354 9 6 1.2191 1.0696 -5.4772 10 6 1.7418 0.5788 -6.6574 11 6 2.8791 1.1578 -7.2054 12 8 3.3924 0.6808 -8.3680 13 6 4.5649 1.2039 -8.7796 14 1 5.0948 1.9033 -8.1501 15 6 5.0904 0.8437 -10.0112 16 7 6.2347 1.3537 -10.4126 17 14 4.1735 -0.3657 -11.1003 18 1 3.2458 0.3759 -11.9917 19 1 5.1473 -1.1276 -11.9229 20 1 3.3988 -1.3067 -10.2522 21 6 3.4933 2.2221 -6.5583 22 6 2.9687 2.7051 -5.3757 23 6 1.9039 2.1460 1.3607 24 6 3.3003 1.5961 1.6961 25 6 3.5627 1.5575 0.1813 26 1 -0.3634 0.4375 0.9299 27 1 -0.3634 0.5866 -0.8438 28 1 -0.3634 -1.0240 -0.0859 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 2.5244 1.2500 -2.5771 32 1 1.4837 3.7229 -3.4595 33 1 0.1843 2.5087 -3.5342 34 1 0.3324 0.6225 -5.0527 35 1 1.2644 -0.2519 -7.1559 36 1 6.6022 1.1021 -11.2743 37 1 4.3806 2.6714 -6.9796 38 1 3.4457 3.5331 -4.8724 39 1 1.8684 3.2330 1.2886 40 1 1.1113 1.7361 1.9868 41 1 3.2813 0.6106 2.1612 42 1 3.9320 2.3055 2.2307 43 1 4.1093 0.6725 -0.1446 44 1 3.9807 2.4837 -0.2132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175967616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:29 Heat of formation + Delta-G solvation = -51.699612 kcal Electronic energy + Delta-G solvation = -24127.703726 eV Core-core repulsion = 20624.079762 eV Total energy + Delta-G solvation = -3503.623965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70732 -40.93041 -39.10187 -38.35071 -35.67027 -34.45480 -33.34076 -31.90484 -31.55865 -28.24657 -27.22554 -26.50957 -25.70082 -23.76260 -23.70766 -22.17401 -21.87099 -19.89609 -19.62671 -19.11075 -18.00301 -17.11762 -16.82766 -16.53191 -16.28157 -16.04724 -15.70534 -15.58589 -15.31897 -14.93607 -14.87618 -14.53399 -14.33995 -14.15325 -14.04591 -13.57018 -13.35566 -13.28698 -13.11775 -12.66482 -12.60693 -12.48658 -12.40431 -12.30961 -12.17786 -11.94472 -11.87522 -11.34008 -11.25329 -11.12231 -10.94344 -10.56829 -10.05924 -9.85297 -9.10487 -8.51857 -6.24831 0.47500 0.52666 1.32190 1.35535 1.52022 1.66823 2.26911 2.30204 2.78951 3.06830 3.10730 3.43350 3.54911 3.77812 3.81915 3.90780 3.98800 4.05872 4.12314 4.37430 4.40582 4.48013 4.52234 4.54195 4.71869 4.79486 4.81644 4.84638 4.88157 4.93461 5.02013 5.06442 5.12846 5.17877 5.20044 5.31499 5.32569 5.38264 5.44759 5.52291 5.53801 5.69032 5.76669 5.86564 6.17392 6.60535 6.82348 7.27382 7.55130 8.59566 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.002704 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.119541 B =10351.620481 C =10542.282832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.106 4.106 4 C 0.527 3.473 5 O -0.586 6.586 6 N -0.714 5.714 7 C 0.181 3.819 8 C -0.173 4.173 9 C -0.045 4.045 10 C -0.190 4.190 11 C 0.130 3.870 12 O -0.241 6.241 13 C -0.399 4.399 14 H 0.082 0.918 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.237 4.237 22 C -0.051 4.051 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.285 0.715 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -4.150 22.436 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 C -0.109 4.109 4 C 0.315 3.685 5 O -0.467 6.467 6 N -0.365 5.365 7 C 0.058 3.942 8 C -0.174 4.174 9 C -0.063 4.063 10 C -0.209 4.209 11 C 0.080 3.920 12 O -0.148 6.148 13 C -0.476 4.476 14 H 0.099 0.901 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.256 4.256 22 C -0.070 4.070 23 C -0.156 4.156 24 C -0.166 4.166 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.246 0.754 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.365 -3.649 22.249 24.413 hybrid contribution 0.551 0.014 -1.176 1.299 sum -8.814 -3.635 21.073 23.129 Atomic orbital electron populations 1.21759 0.95803 1.02122 1.01305 1.21323 0.95813 0.91400 1.04323 1.22329 0.98332 0.97095 0.93128 1.20960 0.79649 0.83599 0.84311 1.90657 1.38517 1.31977 1.85520 1.46175 1.44807 1.40496 1.05034 1.19888 0.97084 0.95618 0.81569 1.19528 0.98601 1.00696 0.98581 1.20930 0.98703 0.94170 0.92513 1.20512 0.97109 1.04146 0.99134 1.19738 0.93488 0.92624 0.86165 1.83532 1.36511 1.59361 1.35393 1.20693 0.95258 1.27417 1.04191 0.90087 1.25290 0.96541 0.99423 0.97519 1.69727 1.19461 1.44529 1.22505 0.85221 0.78424 0.78914 0.78216 1.19273 1.19273 1.18351 1.21262 1.03907 1.00879 0.99576 1.20894 0.94623 0.98146 0.93334 1.22829 0.98877 0.99761 0.94097 1.22826 0.95728 1.02578 0.95462 1.22992 0.92505 1.03150 0.97845 0.92580 0.94853 0.90986 0.90415 0.88565 0.75430 0.91860 0.90771 0.82899 0.84987 0.90517 0.87308 0.85116 0.91417 0.90373 0.87939 0.90625 0.88942 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.64 71.98 0.69 -1.58 16 2 C -0.09 -1.15 5.30 30.59 0.16 -0.99 16 3 C -0.11 -1.75 0.80 -52.40 -0.04 -1.79 16 4 C 0.53 12.38 5.45 87.66 0.48 12.86 16 5 O -0.59 -18.55 16.18 -3.03 -0.05 -18.60 16 6 N -0.71 -15.34 5.55 -466.79 -2.59 -17.92 16 7 C 0.18 4.37 5.80 85.63 0.50 4.86 16 8 C -0.17 -4.77 5.25 -19.83 -0.10 -4.87 16 9 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 10 C -0.19 -6.64 9.99 22.39 0.22 -6.42 16 11 C 0.13 5.71 6.65 22.58 0.15 5.86 16 12 O -0.24 -12.58 8.59 -22.68 -0.19 -12.77 16 13 C -0.40 -22.88 9.90 67.92 0.67 -22.21 16 14 H 0.08 4.87 5.53 -2.91 -0.02 4.85 16 15 C 0.01 0.62 5.49 84.83 0.47 1.09 16 16 N -0.92 -54.14 13.96 21.61 0.30 -53.84 16 17 Si 0.97 44.25 28.62 68.60 1.96 46.21 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.24 -9.85 9.13 22.39 0.20 -9.64 16 22 C -0.05 -1.66 9.69 22.25 0.22 -1.45 16 23 C -0.12 -1.92 6.79 31.12 0.21 -1.71 16 24 C -0.13 -1.47 7.73 31.12 0.24 -1.23 16 25 C -0.13 -1.74 7.22 31.12 0.22 -1.52 16 26 H 0.06 0.83 7.52 -2.38 -0.02 0.82 16 27 H 0.03 0.64 7.13 -2.39 -0.02 0.62 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.85 7.31 -2.39 -0.02 0.83 16 31 H 0.41 7.62 8.47 -92.70 -0.79 6.83 16 32 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.29 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.11 5.05 5.71 -2.91 -0.02 5.04 16 38 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.07 1.40 7.73 -2.39 -0.02 1.39 16 40 H 0.08 1.15 7.47 -2.39 -0.02 1.14 16 41 H 0.10 0.81 7.60 -2.39 -0.02 0.79 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 1.00 8.10 -2.38 -0.02 0.98 16 44 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 Total: -1.00 -67.75 362.49 4.16 -63.59 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.22 Total: 23.07 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.51 Total: -29.74 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.29 Total: -71.76 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.24 Total: -31.37 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.96 Total: 46.21 kcal Total: -67.75 4.16 -63.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175967616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.887 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds